Wall clock time and date at job start Mon Mar 30 2020 06:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35674 * 116.99743 * 2 1 4 4 C 1.38922 * 119.68522 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.11293 * 179.97438 * 4 3 2 6 6 C 1.50699 * 120.75624 * 179.97438 * 5 4 3 7 7 C 1.38830 * 118.48312 * 0.02562 * 5 4 3 8 8 C 1.50704 * 120.35175 * 179.97438 * 7 5 4 9 9 N 1.46898 * 109.47041 * 89.99808 * 8 7 5 10 10 C 1.46906 * 110.99888 * 179.97438 * 9 8 7 11 11 C 1.52993 * 109.47378 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47429 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99822 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00339 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00355 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99771 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47174 * 89.99890 * 16 14 12 18 18 H 1.48501 * 109.47062 * 209.99841 * 16 14 12 19 19 H 1.48503 * 109.47284 * 329.99536 * 16 14 12 20 20 C 1.38039 * 119.28902 * 0.25018 * 7 5 4 21 21 C 1.50704 * 119.57883 * 179.72889 * 20 7 5 22 22 N 1.31962 * 120.83629 * 359.45391 * 20 7 5 23 23 H 1.09006 * 109.46859 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.46901 * 300.00083 * 1 2 3 25 25 H 1.08995 * 109.47162 * 60.00396 * 1 2 3 26 26 H 1.08004 * 120.44215 * 359.97438 * 4 3 2 27 27 H 1.09000 * 109.47261 * 270.02321 * 6 5 4 28 28 H 1.09000 * 109.47514 * 30.02459 * 6 5 4 29 29 H 1.09002 * 109.47099 * 150.02600 * 6 5 4 30 30 H 1.08997 * 109.46924 * 329.99719 * 8 7 5 31 31 H 1.08995 * 109.46962 * 209.99874 * 8 7 5 32 32 H 1.00901 * 111.00121 * 56.04537 * 9 8 7 33 33 H 1.09004 * 109.47040 * 299.99934 * 10 9 8 34 34 H 1.09000 * 109.47033 * 59.99886 * 10 9 8 35 35 H 1.09004 * 109.46862 * 299.99897 * 11 10 9 36 36 H 1.09004 * 109.46998 * 59.99419 * 11 10 9 37 37 H 0.97000 * 119.99584 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.47482 * 90.00066 * 21 20 7 39 39 H 1.09000 * 109.47043 * 210.00216 * 21 20 7 40 40 H 1.09001 * 109.47229 * 329.99627 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5133 -0.0011 6 6 5.5511 2.6271 -0.0011 7 6 3.2503 3.6492 -0.0005 8 6 3.8766 5.0199 -0.0005 9 7 4.0796 5.4656 -1.3854 10 6 4.6893 6.8015 -1.4246 11 6 4.8841 7.2308 -2.8801 12 6 5.5090 8.6015 -2.9202 13 1 5.7441 9.1150 -1.9997 14 6 5.7815 9.1998 -4.1322 15 7 6.3264 10.3962 -4.1673 16 14 5.3755 8.3114 -5.7245 17 1 3.9942 8.6572 -6.1459 18 1 6.3336 8.7257 -6.7807 19 1 5.4759 6.8450 -5.5127 20 6 1.8770 3.5097 0.0058 21 6 1.0044 4.7384 0.0127 22 7 1.3186 2.3140 0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 4.0229 0.3696 -0.0005 27 1 5.9134 2.6545 1.0266 28 1 5.9807 1.7671 -0.5149 29 1 5.8462 3.5420 -0.5149 30 1 4.8373 4.9804 0.5130 31 1 3.2183 5.7201 0.5137 32 1 3.2126 5.4489 -1.9014 33 1 4.0363 7.5139 -0.9204 34 1 5.6556 6.7748 -0.9208 35 1 5.5370 6.5186 -3.3847 36 1 3.9176 7.2576 -3.3834 37 1 6.5177 10.8171 -5.0200 38 1 0.7890 5.0369 -1.0133 39 1 0.0709 4.5182 0.5306 40 1 1.5221 5.5488 0.5258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344343467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:10 Heat of formation + Delta-G solvation = -15.884054 kcal Electronic energy + Delta-G solvation = -19569.314701 eV Core-core repulsion = 16576.952377 eV Total energy + Delta-G solvation = -2992.362323 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.90436 -38.50732 -36.10850 -34.26179 -33.26819 -32.04164 -29.81220 -28.73441 -27.70895 -26.93590 -25.12062 -23.29450 -21.51452 -21.11880 -20.37767 -18.05662 -17.17006 -16.77912 -16.17184 -15.63997 -15.21110 -14.67799 -14.38049 -14.17570 -13.93968 -13.52666 -13.32014 -13.21672 -12.93871 -12.59078 -12.52236 -12.43736 -12.23073 -12.10128 -11.83986 -11.37673 -11.30460 -11.02130 -10.98074 -10.09420 -9.91689 -9.84189 -9.61310 -9.44071 -9.24047 -8.54487 -8.39136 -7.95327 -6.05335 -4.03823 1.07687 1.22049 2.96464 3.31782 3.39566 3.45517 3.61619 4.10059 4.45742 4.58330 4.72191 4.81104 4.98304 5.05436 5.11194 5.12866 5.29430 5.34870 5.36994 5.41856 5.46966 5.52235 5.58747 5.65641 5.76850 5.85116 5.98078 6.09290 6.17721 6.22888 6.43156 6.45683 6.74595 7.09329 7.14352 7.35574 7.57189 7.71514 7.81402 7.87672 8.51812 8.98714 9.57201 11.07955 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.003741 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.893143 B = 7483.226120 C = 7603.444462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.311 6.311 3 C 0.320 3.680 4 C -0.202 4.202 5 C 0.017 3.983 6 C -0.122 4.122 7 C -0.164 4.164 8 C 0.102 3.898 9 N -0.687 5.687 10 C 0.073 3.927 11 C -0.010 4.010 12 C -0.521 4.521 13 H 0.071 0.929 14 C 0.067 3.933 15 N -0.904 5.904 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.263 1.263 20 C 0.173 3.827 21 C -0.111 4.111 22 N -0.546 5.546 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.138 0.862 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.335 0.665 33 H 0.023 0.977 34 H 0.066 0.934 35 H 0.025 0.975 36 H 0.008 0.992 37 H 0.263 0.737 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.538 -18.842 10.426 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.218 6.218 3 C 0.141 3.859 4 C -0.223 4.223 5 C 0.009 3.991 6 C -0.178 4.178 7 C -0.167 4.167 8 C -0.027 4.027 9 N -0.318 5.318 10 C -0.055 4.055 11 C -0.047 4.047 12 C -0.560 4.560 13 H 0.089 0.911 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.188 1.188 20 C 0.037 3.963 21 C -0.168 4.168 22 N -0.270 5.270 23 H 0.111 0.889 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.156 0.844 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.153 0.847 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.043 0.957 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.661 -19.367 10.239 23.942 hybrid contribution -0.383 0.281 -0.685 0.834 sum -10.044 -19.085 9.554 23.588 Atomic orbital electron populations 1.22806 0.77512 1.02614 1.02411 1.86219 1.22711 1.24784 1.88129 1.19715 0.89254 0.84435 0.92484 1.20877 0.91792 0.98933 1.10656 1.19978 0.96940 0.91018 0.91169 1.20921 0.89516 1.04646 1.02756 1.20395 0.93364 0.96393 1.06575 1.20790 0.99657 0.90479 0.91814 1.60677 1.31005 1.29106 1.11022 1.21988 0.97931 0.85474 1.00095 1.19542 0.96541 0.96974 0.91680 1.21063 1.40523 1.00012 0.94388 0.91089 1.25004 0.94529 0.94683 0.99179 1.69914 1.43598 1.14714 1.26056 0.86761 0.78237 0.80959 0.83260 1.20400 1.21428 1.18763 1.20717 0.91367 0.91712 0.92489 1.20848 0.99108 0.93275 1.03582 1.67077 1.40783 0.98278 1.20884 0.88881 0.92462 0.92379 0.84422 0.90611 0.91084 0.88925 0.90140 0.94166 0.84744 0.95877 0.91596 0.95659 0.97335 0.92717 0.89952 0.90595 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.31 -3.80 10.48 -18.72 -0.20 -4.00 16 3 C 0.32 4.30 7.49 -17.12 -0.13 4.17 16 4 C -0.20 -2.51 9.75 -39.28 -0.38 -2.89 16 5 C 0.02 0.21 5.91 -104.35 -0.62 -0.41 16 6 C -0.12 -1.29 9.28 36.01 0.33 -0.95 16 7 C -0.16 -2.16 5.41 -104.47 -0.57 -2.72 16 8 C 0.10 1.35 4.66 -4.97 -0.02 1.33 16 9 N -0.69 -11.04 6.49 -115.06 -0.75 -11.78 16 10 C 0.07 1.40 5.62 -3.82 -0.02 1.38 16 11 C -0.01 -0.23 4.30 -27.89 -0.12 -0.35 16 12 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 13 H 0.07 2.14 7.99 -52.49 -0.42 1.73 16 14 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 15 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 16 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 19 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 20 C 0.17 2.27 6.78 -82.61 -0.56 1.71 16 21 C -0.11 -1.19 9.76 36.01 0.35 -0.84 16 22 N -0.55 -7.49 9.13 -9.55 -0.09 -7.58 16 23 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 25 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 26 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 29 H 0.09 1.13 6.82 -51.93 -0.35 0.77 16 30 H 0.08 1.03 6.81 -51.93 -0.35 0.68 16 31 H 0.04 0.50 5.93 -51.93 -0.31 0.19 16 32 H 0.34 5.28 8.72 -39.29 -0.34 4.94 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 36 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.82 5.92 -51.93 -0.31 0.51 16 LS Contribution 329.24 15.07 4.96 4.96 Total: -1.00 -31.72 329.24 -7.32 -39.04 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.24 Total: 0.62 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.11 Total: -11.35 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.06 Total: -46.43 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.20 Total: -4.00 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.72 -7.32 -39.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344343467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.158 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds