Wall clock time and date at job start Mon Mar 30 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35674 * 116.99743 * 2 1 4 4 C 1.38922 * 119.68522 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.11293 * 179.97438 * 4 3 2 6 6 C 1.50699 * 120.75624 * 179.97438 * 5 4 3 7 7 C 1.38830 * 118.48312 * 0.02562 * 5 4 3 8 8 C 1.50704 * 120.35175 * 179.97438 * 7 5 4 9 9 N 1.46898 * 109.47041 * 89.99808 * 8 7 5 10 10 C 1.46906 * 110.99888 * 179.97438 * 9 8 7 11 11 C 1.52993 * 109.47378 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47429 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99822 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00339 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00355 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99771 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47174 * 89.99890 * 16 14 12 18 18 H 1.48501 * 109.47062 * 209.99841 * 16 14 12 19 19 H 1.48503 * 109.47284 * 329.99536 * 16 14 12 20 20 C 1.38039 * 119.28902 * 0.25018 * 7 5 4 21 21 C 1.50704 * 119.57883 * 179.72889 * 20 7 5 22 22 N 1.31962 * 120.83629 * 359.45391 * 20 7 5 23 23 H 1.09006 * 109.46859 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.46901 * 300.00083 * 1 2 3 25 25 H 1.08995 * 109.47162 * 60.00396 * 1 2 3 26 26 H 1.08004 * 120.44215 * 359.97438 * 4 3 2 27 27 H 1.09000 * 109.47261 * 270.02321 * 6 5 4 28 28 H 1.09000 * 109.47514 * 30.02459 * 6 5 4 29 29 H 1.09002 * 109.47099 * 150.02600 * 6 5 4 30 30 H 1.08997 * 109.46924 * 329.99719 * 8 7 5 31 31 H 1.08995 * 109.46962 * 209.99874 * 8 7 5 32 32 H 1.00901 * 111.00121 * 56.04537 * 9 8 7 33 33 H 1.09004 * 109.47040 * 299.99934 * 10 9 8 34 34 H 1.09000 * 109.47033 * 59.99886 * 10 9 8 35 35 H 1.09004 * 109.46862 * 299.99897 * 11 10 9 36 36 H 1.09004 * 109.46998 * 59.99419 * 11 10 9 37 37 H 0.97000 * 119.99584 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.47482 * 90.00066 * 21 20 7 39 39 H 1.09000 * 109.47043 * 210.00216 * 21 20 7 40 40 H 1.09001 * 109.47229 * 329.99627 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5133 -0.0011 6 6 5.5511 2.6271 -0.0011 7 6 3.2503 3.6492 -0.0005 8 6 3.8766 5.0199 -0.0005 9 7 4.0796 5.4656 -1.3854 10 6 4.6893 6.8015 -1.4246 11 6 4.8841 7.2308 -2.8801 12 6 5.5090 8.6015 -2.9202 13 1 5.7441 9.1150 -1.9997 14 6 5.7815 9.1998 -4.1322 15 7 6.3264 10.3962 -4.1673 16 14 5.3755 8.3114 -5.7245 17 1 3.9942 8.6572 -6.1459 18 1 6.3336 8.7257 -6.7807 19 1 5.4759 6.8450 -5.5127 20 6 1.8770 3.5097 0.0058 21 6 1.0044 4.7384 0.0127 22 7 1.3186 2.3140 0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 4.0229 0.3696 -0.0005 27 1 5.9134 2.6545 1.0266 28 1 5.9807 1.7671 -0.5149 29 1 5.8462 3.5420 -0.5149 30 1 4.8373 4.9804 0.5130 31 1 3.2183 5.7201 0.5137 32 1 3.2126 5.4489 -1.9014 33 1 4.0363 7.5139 -0.9204 34 1 5.6556 6.7748 -0.9208 35 1 5.5370 6.5186 -3.3847 36 1 3.9176 7.2576 -3.3834 37 1 6.5177 10.8171 -5.0200 38 1 0.7890 5.0369 -1.0133 39 1 0.0709 4.5182 0.5306 40 1 1.5221 5.5488 0.5258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344343467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:09 Heat of formation + Delta-G solvation = -38.675374 kcal Electronic energy + Delta-G solvation = -19570.303006 eV Core-core repulsion = 16576.952377 eV Total energy + Delta-G solvation = -2993.350629 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.84397 -39.42864 -37.44331 -35.31816 -34.96784 -33.50359 -31.39495 -29.58668 -28.77050 -27.81355 -26.47411 -24.77423 -22.53999 -22.22855 -21.96453 -18.97092 -18.93200 -18.09528 -17.06646 -16.90869 -16.31581 -16.23835 -15.59517 -15.40041 -14.94566 -14.76995 -14.68641 -14.43007 -14.13129 -13.93699 -13.58174 -13.39748 -13.26532 -13.12872 -12.99022 -12.80962 -12.59352 -12.34846 -11.90302 -11.86782 -11.74044 -11.62303 -11.39590 -10.75319 -10.60695 -10.39137 -9.41386 -9.19844 -8.28379 -6.32258 0.11827 0.25748 1.37363 1.39981 1.52606 2.12108 2.37783 2.63700 3.07672 3.20617 3.46540 3.70849 3.86433 4.00485 4.14177 4.40938 4.41581 4.45971 4.49238 4.50946 4.54669 4.62231 4.66838 4.73425 4.76926 4.81681 4.83705 4.99228 5.01054 5.09365 5.25796 5.33111 5.48086 5.52125 5.56569 5.66130 6.13987 6.24176 6.27404 6.50803 6.76776 6.85869 7.32790 8.88227 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.003741 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.893143 B = 7483.226120 C = 7603.444462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.320 6.320 3 C 0.307 3.693 4 C -0.208 4.208 5 C 0.013 3.987 6 C -0.118 4.118 7 C -0.176 4.176 8 C 0.108 3.892 9 N -0.686 5.686 10 C 0.088 3.912 11 C -0.005 4.005 12 C -0.530 4.530 13 H 0.035 0.965 14 C 0.006 3.994 15 N -0.951 5.951 16 Si 0.951 3.049 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.249 1.249 20 C 0.165 3.835 21 C -0.109 4.109 22 N -0.559 5.559 23 H 0.123 0.877 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.155 0.845 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.339 0.661 33 H 0.022 0.978 34 H 0.061 0.939 35 H 0.021 0.979 36 H 0.016 0.984 37 H 0.266 0.734 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 -20.814 10.197 25.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.227 6.227 3 C 0.128 3.872 4 C -0.229 4.229 5 C 0.005 3.995 6 C -0.175 4.175 7 C -0.179 4.179 8 C -0.021 4.021 9 N -0.317 5.317 10 C -0.041 4.041 11 C -0.043 4.043 12 C -0.569 4.569 13 H 0.053 0.947 14 C -0.191 4.191 15 N -0.592 5.592 16 Si 0.774 3.226 17 H -0.192 1.192 18 H -0.211 1.211 19 H -0.172 1.172 20 C 0.028 3.972 21 C -0.166 4.166 22 N -0.284 5.284 23 H 0.141 0.859 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.173 0.827 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.156 0.844 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.493 -21.360 10.029 25.825 hybrid contribution -0.148 0.875 -0.518 1.028 sum -10.642 -20.485 9.511 24.967 Atomic orbital electron populations 1.23014 0.76041 1.04523 1.02044 1.86211 1.24228 1.24328 1.87961 1.20026 0.89907 0.84766 0.92497 1.21109 0.91726 0.99633 1.10396 1.20246 0.97883 0.90920 0.90461 1.20928 0.88341 1.04368 1.03827 1.20400 0.93561 0.96300 1.07625 1.20767 1.00310 0.90882 0.90161 1.60567 1.31332 1.26758 1.13041 1.21643 0.98160 0.87164 0.97118 1.19434 0.96093 0.94088 0.94651 1.21422 1.40348 1.01979 0.93144 0.94681 1.25966 0.94444 0.95433 1.03263 1.70062 1.45298 1.16636 1.27208 0.85648 0.78384 0.80226 0.78300 1.19221 1.21113 1.17249 1.21062 0.91803 0.92200 0.92091 1.20883 0.99207 0.92571 1.03922 1.67112 1.41166 0.98591 1.21531 0.85891 0.92597 0.92930 0.82707 0.88876 0.89793 0.90495 0.89642 0.93066 0.84370 0.95971 0.92066 0.96043 0.96574 0.92503 0.89692 0.89858 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.38 113.37 1.18 1.82 16 2 O -0.32 -7.38 10.48 -89.92 -0.94 -8.32 16 3 C 0.31 7.85 7.49 84.79 0.63 8.49 16 4 C -0.21 -4.82 9.75 22.47 0.22 -4.60 16 5 C 0.01 0.29 5.91 -19.69 -0.12 0.18 16 6 C -0.12 -2.26 9.28 71.24 0.66 -1.60 16 7 C -0.18 -4.33 5.41 -19.77 -0.11 -4.44 16 8 C 0.11 2.67 4.66 85.56 0.40 3.07 16 9 N -0.69 -20.86 6.49 -517.93 -3.36 -24.22 16 10 C 0.09 3.29 5.62 86.30 0.49 3.78 16 11 C 0.00 -0.22 4.30 29.84 0.13 -0.09 16 12 C -0.53 -30.32 9.66 25.60 0.25 -30.07 16 13 H 0.03 2.19 7.99 -2.91 -0.02 2.16 16 14 C 0.01 0.34 5.47 84.65 0.46 0.80 16 15 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 16 Si 0.95 44.53 27.47 68.60 1.88 46.42 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 20 C 0.16 4.07 6.78 42.49 0.29 4.36 16 21 C -0.11 -2.16 9.76 71.24 0.70 -1.47 16 22 N -0.56 -14.69 9.13 -297.00 -2.71 -17.40 16 23 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 25 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 26 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 29 H 0.08 1.74 6.82 -2.39 -0.02 1.72 16 30 H 0.09 2.04 6.81 -2.39 -0.02 2.03 16 31 H 0.05 1.18 5.93 -2.39 -0.01 1.16 16 32 H 0.34 10.01 8.72 -89.69 -0.78 9.23 16 33 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.02 1.00 7.20 -2.38 -0.02 0.99 16 36 H 0.02 0.72 7.57 -2.39 -0.02 0.70 16 37 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.09 1.61 5.92 -2.39 -0.01 1.60 16 Total: -1.00 -67.88 329.24 0.54 -67.34 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.19 Total: 15.28 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 5.17 Total: -19.78 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -5.77 Total: -100.94 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.94 Total: -8.32 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.42 kcal Total: -67.88 0.54 -67.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344343467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.666 kcal (2) G-P(sol) polarization free energy of solvation -67.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds