Wall clock time and date at job start Mon Mar 30 2020 06:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47369 * 2 1 4 4 C 1.41383 * 126.80594 * 124.99184 * 3 2 1 5 5 C 1.35446 * 103.98736 * 179.77681 * 4 3 2 6 6 C 1.50708 * 126.77527 * 180.23005 * 5 4 3 7 7 C 1.52997 * 109.47120 * 89.99929 * 6 5 4 8 8 C 1.52998 * 109.47145 * 180.02562 * 7 6 5 9 9 N 1.46499 * 109.47436 * 180.02562 * 8 7 6 10 10 C 1.36939 * 119.99782 * 270.00256 * 9 8 7 11 11 H 1.08000 * 119.99841 * 140.53887 * 10 9 8 12 12 C 1.38813 * 119.99726 * 320.52734 * 10 9 8 13 13 N 1.31617 * 120.00335 * 340.28700 * 12 10 9 14 14 Si 1.86800 * 119.99784 * 160.28649 * 12 10 9 15 15 H 1.48497 * 109.47394 * 90.00054 * 14 12 10 16 16 H 1.48497 * 109.47126 * 210.00630 * 14 12 10 17 17 H 1.48508 * 109.47027 * 330.00190 * 14 12 10 18 18 C 1.46502 * 119.99867 * 89.99592 * 9 8 7 19 19 C 1.53010 * 117.49524 * 183.28756 * 18 9 8 20 20 C 1.52998 * 59.99887 * 252.51290 * 19 18 9 21 21 O 1.34037 * 106.44645 * 0.22557 * 5 4 3 22 22 N 1.20923 * 111.57009 * 0.02562 * 21 5 4 23 23 H 1.09001 * 109.46818 * 60.00164 * 1 2 3 24 24 H 1.09003 * 109.47184 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47735 * 300.00187 * 1 2 3 26 26 H 1.09001 * 109.47296 * 239.99647 * 2 1 3 27 27 H 1.09001 * 109.46818 * 119.99836 * 2 1 3 28 28 H 1.07999 * 128.00402 * 0.04146 * 4 3 2 29 29 H 1.08994 * 109.46732 * 209.99833 * 6 5 4 30 30 H 1.08994 * 109.47153 * 329.99947 * 6 5 4 31 31 H 1.09002 * 109.47388 * 300.00224 * 7 6 5 32 32 H 1.08998 * 109.47531 * 59.99755 * 7 6 5 33 33 H 1.09002 * 109.47123 * 300.00340 * 8 7 6 34 34 H 1.08998 * 109.47144 * 59.99472 * 8 7 6 35 35 H 0.97000 * 120.00413 * 175.01685 * 13 12 10 36 36 H 1.08993 * 115.55353 * 328.99512 * 18 9 8 37 37 H 1.09001 * 117.49835 * 0.02562 * 19 18 9 38 38 H 1.08998 * 117.49542 * 145.01776 * 19 18 9 39 39 H 1.09001 * 117.50232 * 252.50937 * 20 19 18 40 40 H 1.09005 * 117.51635 * 107.48681 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9267 2.0029 0.9274 5 6 3.0629 3.2790 0.4941 6 6 3.9141 4.3566 1.1149 7 6 5.3130 4.3213 0.4962 8 6 6.1773 5.4150 1.1269 9 7 7.5166 5.3816 0.5341 10 6 8.4945 4.6044 1.0951 11 1 9.1806 4.0601 0.4632 12 6 8.6040 4.5163 2.4761 13 7 8.0592 5.4396 3.2398 14 14 9.5248 3.0875 3.2508 15 1 10.9564 3.4486 3.4091 16 1 8.9403 2.7855 4.5821 17 1 9.4095 1.8923 2.3769 18 6 7.8095 6.1797 -0.6590 19 6 9.2032 6.0431 -1.2756 20 6 8.8237 7.3165 -0.5170 21 8 2.2913 3.3941 -0.5958 22 7 1.7259 2.3562 -0.8519 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 3.3964 1.5367 1.7809 29 1 3.4596 5.3299 0.9304 30 1 3.9876 4.1878 2.1892 31 1 5.7675 3.3479 0.6807 32 1 5.2395 4.4901 -0.5781 33 1 5.7230 6.3885 0.9428 34 1 6.2507 5.2457 2.2012 35 1 8.0728 5.3410 4.2047 36 1 6.9714 6.3349 -1.3383 37 1 9.9019 5.3592 -0.7937 38 1 9.2821 6.1083 -2.3607 39 1 8.6529 8.2195 -1.1031 40 1 9.2726 7.4709 0.4642 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347750572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:01 Heat of formation + Delta-G solvation = 73.187176 kcal Electronic energy + Delta-G solvation = -19687.882172 eV Core-core repulsion = 16699.382267 eV Total energy + Delta-G solvation = -2988.499905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.84549 -38.84665 -36.48098 -36.37012 -34.89766 -32.94921 -32.13422 -30.87735 -27.50857 -25.73743 -25.18886 -23.90720 -23.05600 -22.49682 -21.42834 -20.52443 -18.51171 -18.35759 -17.93960 -17.17121 -16.48048 -15.99703 -15.81493 -15.39433 -15.10596 -14.75830 -14.45944 -14.19912 -13.99486 -13.61367 -13.32101 -13.14989 -12.77790 -12.62024 -12.49589 -12.47298 -12.39474 -12.27371 -11.98091 -11.81876 -11.71813 -11.34838 -11.22049 -10.94878 -10.88851 -10.45395 -10.24397 -8.45401 -7.75509 -5.47347 0.51847 1.30191 1.45008 1.48902 1.57354 2.17805 2.51312 3.18006 3.26524 3.43806 3.45686 3.59120 4.06598 4.19234 4.26172 4.29654 4.33181 4.39796 4.43357 4.51137 4.54234 4.60492 4.71352 4.88050 4.88897 4.95342 4.96364 5.05706 5.09523 5.10779 5.15808 5.21640 5.32765 5.38417 5.52891 5.57430 5.70990 5.87928 6.50661 7.20300 7.30928 7.87996 8.40511 9.13673 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019288 B = 0.004657 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.334560 B = 6011.654651 C = 6884.032635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C 0.018 3.982 4 C -0.246 4.246 5 C -0.013 4.013 6 C -0.030 4.030 7 C -0.112 4.112 8 C 0.153 3.847 9 N -0.571 5.571 10 C -0.263 4.263 11 H 0.052 0.948 12 C -0.027 4.027 13 N -0.911 5.911 14 Si 0.949 3.051 15 H -0.289 1.289 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.101 3.899 19 C -0.184 4.184 20 C -0.217 4.217 21 O 0.075 5.925 22 N -0.397 5.397 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.186 0.814 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.035 0.965 34 H 0.069 0.931 35 H 0.252 0.748 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.528 -6.725 -4.213 13.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.267 4.267 5 C -0.077 4.077 6 C -0.069 4.069 7 C -0.152 4.152 8 C 0.028 3.972 9 N -0.288 5.288 10 C -0.394 4.394 11 H 0.070 0.930 12 C -0.225 4.225 13 N -0.554 5.554 14 Si 0.776 3.224 15 H -0.215 1.215 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.007 4.007 19 C -0.223 4.223 20 C -0.257 4.257 21 O 0.014 5.986 22 N -0.106 5.106 23 H 0.064 0.936 24 H 0.105 0.895 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.124 0.876 28 H 0.204 0.796 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.278 -6.609 -5.097 14.846 hybrid contribution 1.267 -0.652 1.301 1.929 sum -11.011 -7.261 -3.796 13.725 Atomic orbital electron populations 1.21695 0.93503 1.03231 1.01627 1.20136 0.97027 0.86418 1.04878 1.24137 0.98003 0.99202 0.92732 1.22763 1.04839 0.93959 1.05139 1.24900 0.95475 0.98581 0.88729 1.20181 0.91810 0.95076 0.99838 1.21958 0.93029 1.00723 0.99499 1.20811 0.82756 0.94521 0.99143 1.43587 1.07502 1.48849 1.28908 1.19128 1.10995 1.19992 0.89247 0.93009 1.25789 0.99928 0.99175 0.97582 1.70164 1.49122 1.32259 1.03871 0.85607 0.78368 0.80566 0.77818 1.21543 1.21179 1.19841 1.21546 0.91638 0.95563 0.91924 1.23010 0.99912 1.00502 0.98836 1.23243 1.08988 0.93287 1.00225 1.84763 1.45446 1.29950 1.38471 1.73758 1.18829 0.94001 1.24048 0.93627 0.89546 0.92894 0.89407 0.87597 0.79641 0.88232 0.87719 0.93745 0.93196 0.94615 0.91342 0.93843 0.87196 0.90885 0.87339 0.88129 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.88 71.98 0.71 -1.66 16 2 C -0.05 -0.87 6.53 29.85 0.19 -0.67 16 3 C 0.02 0.48 6.59 43.58 0.29 0.77 16 4 C -0.25 -6.55 11.05 22.40 0.25 -6.30 16 5 C -0.01 -0.39 6.74 25.04 0.17 -0.22 16 6 C -0.03 -0.86 5.78 29.85 0.17 -0.68 16 7 C -0.11 -4.00 5.52 30.59 0.17 -3.83 16 8 C 0.15 6.60 5.33 86.38 0.46 7.06 16 9 N -0.57 -27.37 2.75 -678.02 -1.86 -29.23 16 10 C -0.26 -13.92 8.47 84.03 0.71 -13.21 16 11 H 0.05 2.79 6.74 -2.91 -0.02 2.78 16 12 C -0.03 -1.42 4.98 84.86 0.42 -1.00 16 13 N -0.91 -50.72 11.50 21.65 0.25 -50.47 16 14 Si 0.95 43.03 29.60 68.60 2.03 45.06 16 15 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 16 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 C 0.10 4.20 6.56 44.99 0.30 4.50 16 19 C -0.18 -7.08 9.80 30.60 0.30 -6.78 16 20 C -0.22 -8.66 10.36 30.59 0.32 -8.35 16 21 O 0.08 2.37 11.20 71.66 0.80 3.17 16 22 N -0.40 -12.37 12.05 -49.56 -0.60 -12.96 16 23 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 24 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.11 1.51 8.14 -2.39 -0.02 1.50 16 28 H 0.19 4.15 8.06 -2.91 -0.02 4.12 16 29 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.04 1.45 8.07 -2.39 -0.02 1.43 16 34 H 0.07 3.35 5.59 -2.39 -0.01 3.34 16 35 H 0.25 13.56 8.32 -92.71 -0.77 12.79 16 36 H 0.11 3.98 8.14 -2.39 -0.02 3.97 16 37 H 0.07 3.15 6.46 -2.39 -0.02 3.14 16 38 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 39 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.05 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -61.50 335.11 6.09 -55.41 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 1.01 Total: 19.39 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 4.46 Total: -30.36 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -2.21 Total: -92.67 kcal Atomic # 8 Polarization: 2.37 SS G_CDS: 0.80 Total: 3.17 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -61.50 6.09 -55.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347750572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.597 kcal (2) G-P(sol) polarization free energy of solvation -61.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds