Wall clock time and date at job start Mon Mar 30 2020 06:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47404 * 2 1 4 4 N 1.46493 * 109.47370 * 179.97438 * 3 2 1 5 5 C 1.35048 * 126.40113 * 264.99895 * 4 3 2 6 6 N 1.30492 * 108.69954 * 180.02562 * 5 4 3 7 7 C 1.34136 * 109.25989 * 359.75817 * 6 5 4 8 8 C 1.34670 * 108.01442 * 0.39750 * 7 6 5 9 9 C 1.50698 * 126.58585 * 179.87822 * 8 7 6 10 10 H 1.09002 * 110.67453 * 326.19448 * 9 8 7 11 11 C 1.54990 * 110.62245 * 89.16175 * 9 8 7 12 12 C 1.54806 * 102.09495 * 155.52145 * 11 9 8 13 13 C 1.54105 * 104.18806 * 339.12290 * 12 11 9 14 14 C 1.53005 * 110.00037 * 238.47203 * 13 12 11 15 15 C 1.50697 * 109.87822 * 117.39385 * 13 12 11 16 16 H 1.07991 * 120.00449 * 0.43760 * 15 13 12 17 17 C 1.37885 * 119.99686 * 180.71591 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 13 20 20 H 1.48490 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 120.00108 * 19 17 15 22 22 H 1.48504 * 109.46636 * 239.99667 * 19 17 15 23 23 O 1.43740 * 107.29336 * 357.96466 * 13 12 11 24 24 H 1.09001 * 109.47349 * 59.99414 * 1 2 3 25 25 H 1.08994 * 109.47333 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46996 * 299.99732 * 1 2 3 27 27 H 1.09000 * 109.47502 * 240.00314 * 2 1 3 28 28 H 1.09000 * 109.47607 * 119.99849 * 2 1 3 29 29 H 1.09003 * 109.46826 * 60.00163 * 3 2 1 30 30 H 1.09001 * 109.47346 * 300.00588 * 3 2 1 31 31 H 1.07994 * 125.64742 * 359.97438 * 5 4 3 32 32 H 1.07998 * 125.99269 * 180.24976 * 7 6 5 33 33 H 1.09005 * 110.90849 * 273.72095 * 11 9 8 34 34 H 1.09001 * 110.90608 * 37.28781 * 11 9 8 35 35 H 1.08999 * 110.49070 * 220.44140 * 12 11 9 36 36 H 1.09003 * 110.48791 * 97.79255 * 12 11 9 37 37 H 1.08997 * 109.47372 * 299.61316 * 14 13 12 38 38 H 1.09003 * 109.46672 * 59.61847 * 14 13 12 39 39 H 1.08999 * 109.46742 * 179.60992 * 14 13 12 40 40 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3060 1.5374 1.0838 6 7 5.5493 1.5033 0.6890 7 6 5.5863 1.3813 -0.6463 8 6 4.3176 1.3470 -1.0967 9 6 3.8773 1.2209 -2.5324 10 1 4.5779 1.7281 -3.1958 11 6 3.7314 -0.2701 -2.9297 12 6 2.7198 -0.1966 -4.0992 13 6 2.0096 1.1564 -3.8999 14 6 0.5030 0.9387 -3.7450 15 6 2.2787 2.0551 -5.0793 16 1 2.8880 1.7031 -5.8984 17 6 1.7516 3.3288 -5.1098 18 7 1.0095 3.7575 -4.1122 19 14 2.0916 4.4455 -6.5681 20 1 2.9471 3.7315 -7.5495 21 1 0.8080 4.8231 -7.2122 22 1 2.7903 5.6700 -6.1015 23 8 2.5436 1.7471 -2.7032 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9727 1.6275 2.1070 32 1 6.4773 1.3233 -1.2538 33 1 4.6848 -0.6784 -3.2652 34 1 3.3291 -0.8554 -2.1029 35 1 2.0040 -1.0162 -4.0366 36 1 3.2411 -0.2164 -5.0564 37 1 0.1103 0.4631 -4.6437 38 1 0.3152 0.2984 -2.8832 39 1 0.0104 1.8998 -3.5977 40 1 0.6385 4.6534 -4.1338 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379746525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:42 Heat of formation + Delta-G solvation = 5.870485 kcal Electronic energy + Delta-G solvation = -21566.042699 eV Core-core repulsion = 18574.623723 eV Total energy + Delta-G solvation = -2991.418976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.66342 -38.34744 -35.21107 -33.12423 -31.66998 -31.06858 -30.73471 -28.40134 -26.00642 -25.32256 -24.39249 -21.72814 -21.43951 -20.99235 -19.45782 -19.08939 -16.73046 -16.54380 -15.33927 -14.91659 -14.68167 -14.59713 -14.23519 -13.74931 -13.37536 -13.13441 -12.95933 -12.59129 -12.40022 -12.12841 -11.76389 -11.48969 -11.29436 -11.15561 -11.12157 -10.92911 -10.78835 -10.63608 -10.39633 -10.33985 -9.96694 -9.56604 -9.55546 -9.24672 -9.02806 -8.54396 -8.12254 -7.76367 -6.02446 -4.18565 2.51372 3.24973 3.29903 3.34431 3.37037 3.57458 4.37225 4.81818 5.03081 5.04063 5.13386 5.25013 5.35583 5.43750 5.53194 5.59042 5.71925 5.77526 5.84015 5.98417 6.04908 6.12545 6.20365 6.31330 6.32636 6.41843 6.53565 6.61841 6.64692 6.78730 6.85087 6.94397 7.04433 7.19221 7.36557 7.69484 7.72308 7.95405 8.26815 8.45870 8.50094 8.90016 9.53990 10.98947 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.007617 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.779547 B = 3674.971438 C = 4124.975415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.094 3.906 4 N -0.435 5.435 5 C 0.159 3.841 6 N -0.499 5.499 7 C -0.044 4.044 8 C 0.013 3.987 9 C 0.151 3.849 10 H 0.081 0.919 11 C -0.142 4.142 12 C -0.143 4.143 13 C 0.227 3.773 14 C -0.131 4.131 15 C -0.543 4.543 16 H 0.057 0.943 17 C 0.083 3.917 18 N -0.861 5.861 19 Si 0.885 3.115 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 O -0.350 6.350 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.132 0.868 31 H 0.196 0.804 32 H 0.164 0.836 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.038 0.962 38 H 0.016 0.984 39 H 0.090 0.910 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.072 -6.572 6.725 9.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.028 4.028 4 N -0.116 5.116 5 C -0.123 4.123 6 N -0.218 5.218 7 C -0.191 4.191 8 C -0.104 4.104 9 C 0.091 3.909 10 H 0.099 0.901 11 C -0.180 4.180 12 C -0.180 4.180 13 C 0.190 3.810 14 C -0.188 4.188 15 C -0.580 4.580 16 H 0.075 0.925 17 C -0.122 4.122 18 N -0.497 5.497 19 Si 0.713 3.287 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 O -0.270 6.270 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.149 0.851 31 H 0.213 0.787 32 H 0.181 0.819 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.035 0.965 39 H 0.108 0.892 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.220 -6.211 7.454 9.705 hybrid contribution -0.371 0.520 -1.375 1.516 sum -0.151 -5.692 6.079 8.329 Atomic orbital electron populations 1.21695 0.94617 1.01756 1.02545 1.21823 0.96707 0.96105 1.02338 1.22283 0.75842 0.98576 1.06053 1.45350 1.07797 1.52149 1.06325 1.24714 0.85982 1.07993 0.93564 1.70185 1.19556 1.20037 1.12020 1.21861 0.95505 1.10543 0.91229 1.21415 0.90858 1.08386 0.89731 1.21120 0.89893 0.92716 0.87139 0.90113 1.23112 0.99590 0.96767 0.98555 1.23097 0.97584 0.99752 0.97607 1.19629 0.90529 0.87119 0.83746 1.21823 0.97509 1.02242 0.97235 1.21491 1.33331 0.99183 1.04039 0.92463 1.24958 0.94082 0.97797 0.95370 1.69928 1.32240 1.17460 1.30102 0.86662 0.78101 0.80937 0.82986 1.19767 1.20991 1.20971 1.88931 1.23936 1.68204 1.45879 0.91241 0.92678 0.92970 0.90862 0.92657 0.90410 0.85068 0.78706 0.81895 0.91650 0.92129 0.92789 0.91546 0.94315 0.96515 0.89174 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.13 -1.83 6.26 -26.73 -0.17 -2.00 16 3 C 0.09 1.48 5.66 -4.04 -0.02 1.45 16 4 N -0.44 -7.48 2.75 -114.00 -0.31 -7.79 16 5 C 0.16 2.57 12.56 -90.38 -1.13 1.44 16 6 N -0.50 -9.16 11.25 -14.67 -0.16 -9.32 16 7 C -0.04 -0.80 11.79 -17.81 -0.21 -1.01 16 8 C 0.01 0.24 6.12 -81.60 -0.50 -0.26 16 9 C 0.15 3.02 3.74 -26.83 -0.10 2.92 16 10 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 11 C -0.14 -2.51 6.56 -24.73 -0.16 -2.67 16 12 C -0.14 -2.77 6.27 -25.20 -0.16 -2.92 16 13 C 0.23 5.17 0.75 -91.19 -0.07 5.11 16 14 C -0.13 -2.88 8.46 37.16 0.31 -2.57 16 15 C -0.54 -14.02 8.18 -34.44 -0.28 -14.30 16 16 H 0.06 1.48 7.33 -52.49 -0.38 1.10 16 17 C 0.08 2.19 5.26 -17.82 -0.09 2.10 16 18 N -0.86 -23.30 10.93 55.43 0.61 -22.69 16 19 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 O -0.35 -7.97 7.08 -35.23 -0.25 -8.22 16 24 H 0.07 0.98 7.07 -51.93 -0.37 0.62 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.16 6.28 -51.93 -0.33 0.83 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.02 8.13 -51.93 -0.42 0.60 16 30 H 0.13 2.54 5.65 -51.93 -0.29 2.25 16 31 H 0.20 2.35 8.06 -52.49 -0.42 1.93 16 32 H 0.16 2.61 8.06 -52.49 -0.42 2.19 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 1.04 6.21 -51.93 -0.32 0.71 16 35 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 36 H 0.07 1.30 7.39 -51.93 -0.38 0.91 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.02 0.32 7.07 -51.93 -0.37 -0.05 16 39 H 0.09 2.23 6.04 -51.93 -0.31 1.91 16 40 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 316.56 15.07 4.77 4.77 Total: -1.00 -28.62 316.56 -8.69 -37.31 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.10 Total: 4.53 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -2.22 Total: -14.18 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.13 Total: -39.80 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.25 Total: -8.22 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.62 -8.69 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379746525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.179 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds