Wall clock time and date at job start Mon Mar 30 2020 07:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47174 * 2 1 4 4 C 1.52996 * 109.47083 * 120.00227 * 2 1 3 5 5 C 1.53007 * 109.47140 * 184.99975 * 4 2 1 6 6 C 1.52996 * 109.47140 * 179.97438 * 5 4 2 7 7 N 1.46902 * 109.47008 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46960 * 240.00466 * 2 1 3 9 9 C 1.39775 * 120.00126 * 84.99923 * 8 2 1 10 10 C 1.38954 * 120.00780 * 179.97438 * 9 8 2 11 11 C 1.38002 * 119.99703 * 179.97438 * 10 9 8 12 12 C 1.38905 * 120.00778 * 0.26007 * 11 10 9 13 13 O 1.35795 * 119.99487 * 179.71935 * 12 11 10 14 14 C 1.34806 * 117.00105 * 354.45908 * 13 12 11 15 15 H 1.07995 * 120.00087 * 5.05500 * 14 13 12 16 16 C 1.38623 * 119.99845 * 185.05398 * 14 13 12 17 17 N 1.31577 * 120.00092 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99988 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47011 * 59.99992 * 18 16 14 20 20 H 1.48492 * 109.47070 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46699 * 300.00406 * 18 16 14 22 22 C 1.38904 * 120.00733 * 359.48757 * 12 11 10 23 23 C 1.38010 * 120.00499 * 0.51239 * 22 12 11 24 24 H 1.09005 * 109.46972 * 59.99499 * 1 2 3 25 25 H 1.08994 * 109.47365 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46718 * 299.99952 * 1 2 3 27 27 H 1.09000 * 109.47080 * 304.99881 * 4 2 1 28 28 H 1.09006 * 109.47094 * 65.00201 * 4 2 1 29 29 H 1.09000 * 109.46534 * 299.99891 * 5 4 2 30 30 H 1.08994 * 109.47332 * 59.99972 * 5 4 2 31 31 H 1.09001 * 109.47548 * 300.00158 * 6 5 4 32 32 H 1.09006 * 109.47094 * 60.00226 * 6 5 4 33 33 H 1.00898 * 110.99998 * 180.02562 * 7 6 5 34 34 H 1.00896 * 111.00283 * 303.95484 * 7 6 5 35 35 H 0.97001 * 119.99403 * 264.99585 * 8 2 1 36 36 H 1.07997 * 119.99624 * 359.96486 * 10 9 8 37 37 H 1.08000 * 120.00051 * 179.97438 * 11 10 9 38 38 H 0.96996 * 120.00136 * 179.97438 * 17 16 14 39 39 H 1.07996 * 119.99809 * 180.25252 * 22 12 11 40 40 H 1.08001 * 120.00161 * 179.72091 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0748 -1.3341 2.5632 7 7 5.5389 -1.2309 2.6247 8 7 2.0183 -0.6905 -1.1963 9 6 2.1518 0.0068 -2.4003 10 6 2.6154 -0.6479 -3.5348 11 6 2.7466 0.0407 -4.7236 12 6 2.4204 1.3895 -4.7847 13 8 2.5550 2.0682 -5.9532 14 6 3.1172 1.4063 -6.9842 15 1 3.3623 0.3593 -6.8843 16 6 3.3807 2.0696 -8.1726 17 7 3.0825 3.3453 -8.2941 18 14 4.1591 1.1522 -9.6015 19 1 3.2782 0.0272 -10.0062 20 1 4.3364 2.0797 -10.7475 21 1 5.4820 0.6203 -9.1864 22 6 1.9519 2.0430 -3.6520 23 6 1.8205 1.3548 -2.4630 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6054 -0.2618 2.1369 28 1 1.7517 -1.7716 1.2055 29 1 3.9994 -1.0729 0.4259 30 1 3.8533 0.4369 1.3573 31 1 3.6402 -0.8742 3.4507 32 1 3.7865 -2.3844 2.5199 33 1 5.9004 -1.6999 3.4416 34 1 5.9626 -1.5926 1.7834 35 1 2.2490 -1.6317 -1.1527 36 1 2.8732 -1.6955 -3.4862 37 1 3.1074 -0.4680 -5.6053 38 1 3.2672 3.8095 -9.1255 39 1 1.6944 3.0907 -3.7008 40 1 1.4606 1.8640 -1.5812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380082491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:17 Heat of formation + Delta-G solvation = -12.996541 kcal Electronic energy + Delta-G solvation = -19309.875139 eV Core-core repulsion = 16317.638027 eV Total energy + Delta-G solvation = -2992.237111 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.14563 -37.83270 -36.28506 -34.86378 -32.28976 -31.52698 -30.30519 -29.56111 -26.99202 -25.27768 -24.85832 -22.39996 -21.59833 -21.05736 -20.15275 -17.74467 -17.22473 -16.38929 -16.13447 -15.71650 -15.04344 -14.51401 -14.42038 -14.03956 -13.85495 -13.50907 -13.32186 -13.03019 -12.62951 -12.56911 -12.41869 -12.23791 -11.79489 -11.63225 -11.49919 -11.19212 -11.12410 -10.88933 -10.81947 -10.72561 -10.51606 -10.30482 -9.19513 -9.14323 -9.00596 -8.40697 -8.12569 -6.34474 -6.28964 -3.86292 2.24656 2.62503 3.20522 3.21895 3.24288 3.86832 4.08788 4.19003 4.65258 4.71911 4.79156 5.00276 5.12764 5.23087 5.27151 5.35762 5.43699 5.50054 5.61557 5.65851 5.69824 5.76695 5.80541 5.95450 6.04887 6.15290 6.25695 6.26479 6.35114 6.59884 6.81777 6.90900 6.96545 7.10839 7.18848 7.35598 7.49737 7.69150 8.04375 8.15360 8.30546 9.16744 9.92002 10.89697 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.028440 B = 0.003549 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.300646 B = 7888.431486 C = 8383.902363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.156 3.844 3 H 0.075 0.925 4 C -0.123 4.123 5 C -0.117 4.117 6 C 0.061 3.939 7 N -0.854 5.854 8 N -0.753 5.753 9 C 0.128 3.872 10 C -0.144 4.144 11 C -0.190 4.190 12 C 0.112 3.888 13 O -0.189 6.189 14 C -0.387 4.387 15 H 0.087 0.913 16 C 0.036 3.964 17 N -0.870 5.870 18 Si 0.937 3.063 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.272 1.272 22 C -0.150 4.150 23 C -0.147 4.147 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.023 0.977 33 H 0.339 0.661 34 H 0.342 0.658 35 H 0.388 0.612 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.267 0.733 39 H 0.116 0.884 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.772 -10.008 18.521 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.049 3.951 3 H 0.093 0.907 4 C -0.161 4.161 5 C -0.155 4.155 6 C -0.070 4.070 7 N -0.383 5.383 8 N -0.388 5.388 9 C 0.030 3.970 10 C -0.166 4.166 11 C -0.210 4.210 12 C 0.060 3.940 13 O -0.094 6.094 14 C -0.464 4.464 15 H 0.104 0.896 16 C -0.167 4.167 17 N -0.507 5.507 18 Si 0.762 3.238 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.197 1.197 22 C -0.170 4.170 23 C -0.169 4.169 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.221 0.779 36 H 0.122 0.878 37 H 0.144 0.856 38 H 0.077 0.923 39 H 0.134 0.866 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.005 -8.652 18.424 20.379 hybrid contribution 0.451 -1.997 -0.783 2.191 sum -0.554 -10.649 17.641 20.613 Atomic orbital electron populations 1.22317 0.96713 1.01878 1.01910 1.20697 0.92915 0.96904 0.84546 0.90716 1.21814 0.95602 1.00911 0.97800 1.21560 0.94963 1.01853 0.97155 1.21836 0.88146 0.97855 0.99174 1.58702 1.05799 1.65843 1.07944 1.44297 1.76447 1.11290 1.06761 1.17385 1.01934 0.91711 0.86009 1.20216 1.05749 0.98585 0.92091 1.20978 1.07264 0.94690 0.98059 1.19236 0.96305 0.90764 0.87691 1.83983 1.70791 1.38880 1.15763 1.21179 1.39919 0.94865 0.90403 0.89556 1.25203 0.97523 0.95844 0.98103 1.70036 1.45376 1.08568 1.26678 0.85846 0.79412 0.78695 0.79812 1.19709 1.20438 1.19696 1.20033 1.06489 0.99655 0.90837 1.20206 1.06721 0.92739 0.97195 0.91942 0.92849 0.92573 0.90952 0.91917 0.91561 0.91066 0.91282 0.95900 0.84914 0.84588 0.77899 0.87805 0.85621 0.92279 0.86608 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 9.43 37.16 0.35 -1.42 16 2 C 0.16 1.70 2.27 -67.93 -0.15 1.55 16 3 H 0.07 0.90 6.48 -51.93 -0.34 0.56 16 4 C -0.12 -1.04 4.75 -26.73 -0.13 -1.17 16 5 C -0.12 -1.09 5.36 -26.73 -0.14 -1.23 16 6 C 0.06 0.49 6.79 -3.82 -0.03 0.46 16 7 N -0.85 -6.99 9.62 -10.37 -0.10 -7.09 16 8 N -0.75 -9.81 4.70 -52.11 -0.25 -10.05 16 9 C 0.13 2.19 6.64 -83.71 -0.56 1.64 16 10 C -0.14 -2.69 9.89 -39.40 -0.39 -3.08 16 11 C -0.19 -4.23 9.16 -39.42 -0.36 -4.59 16 12 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 13 O -0.19 -5.57 9.76 -0.02 0.00 -5.57 16 14 C -0.39 -11.14 9.48 30.87 0.29 -10.85 16 15 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 16 C 0.04 1.02 5.49 -17.52 -0.10 0.93 16 17 N -0.87 -26.31 13.67 55.48 0.76 -25.55 16 18 Si 0.94 21.14 29.55 -169.99 -5.02 16.11 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 C -0.15 -3.26 9.98 -39.42 -0.39 -3.66 16 23 C -0.15 -2.68 8.84 -39.40 -0.35 -3.03 16 24 H 0.06 0.77 7.70 -51.93 -0.40 0.38 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.34 2.14 9.08 -39.29 -0.36 1.78 16 34 H 0.34 2.62 8.99 -39.29 -0.35 2.27 16 35 H 0.39 4.50 8.61 -40.82 -0.35 4.14 16 36 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.13 2.80 5.63 -52.49 -0.30 2.51 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 39 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 40 H 0.11 1.75 6.10 -52.49 -0.32 1.43 16 LS Contribution 330.33 15.07 4.98 4.98 Total: -1.00 -31.71 330.33 -7.87 -39.58 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.03 Total: 9.51 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -2.21 Total: -21.92 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.41 Total: -42.69 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: 0.00 Total: -5.57 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.71 -7.87 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380082491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.583 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds