Wall clock time and date at job start Mon Mar 30 2020 07:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47174 * 2 1 4 4 C 1.52996 * 109.47083 * 120.00227 * 2 1 3 5 5 C 1.53007 * 109.47140 * 184.99975 * 4 2 1 6 6 C 1.52996 * 109.47140 * 179.97438 * 5 4 2 7 7 N 1.46902 * 109.47008 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46960 * 240.00466 * 2 1 3 9 9 C 1.39775 * 120.00126 * 84.99923 * 8 2 1 10 10 C 1.38954 * 120.00780 * 179.97438 * 9 8 2 11 11 C 1.38002 * 119.99703 * 179.97438 * 10 9 8 12 12 C 1.38905 * 120.00778 * 0.26007 * 11 10 9 13 13 O 1.35795 * 119.99487 * 179.71935 * 12 11 10 14 14 C 1.34806 * 117.00105 * 354.45908 * 13 12 11 15 15 H 1.07995 * 120.00087 * 5.05500 * 14 13 12 16 16 C 1.38623 * 119.99845 * 185.05398 * 14 13 12 17 17 N 1.31577 * 120.00092 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99988 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47011 * 59.99992 * 18 16 14 20 20 H 1.48492 * 109.47070 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46699 * 300.00406 * 18 16 14 22 22 C 1.38904 * 120.00733 * 359.48757 * 12 11 10 23 23 C 1.38010 * 120.00499 * 0.51239 * 22 12 11 24 24 H 1.09005 * 109.46972 * 59.99499 * 1 2 3 25 25 H 1.08994 * 109.47365 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46718 * 299.99952 * 1 2 3 27 27 H 1.09000 * 109.47080 * 304.99881 * 4 2 1 28 28 H 1.09006 * 109.47094 * 65.00201 * 4 2 1 29 29 H 1.09000 * 109.46534 * 299.99891 * 5 4 2 30 30 H 1.08994 * 109.47332 * 59.99972 * 5 4 2 31 31 H 1.09001 * 109.47548 * 300.00158 * 6 5 4 32 32 H 1.09006 * 109.47094 * 60.00226 * 6 5 4 33 33 H 1.00898 * 110.99998 * 180.02562 * 7 6 5 34 34 H 1.00896 * 111.00283 * 303.95484 * 7 6 5 35 35 H 0.97001 * 119.99403 * 264.99585 * 8 2 1 36 36 H 1.07997 * 119.99624 * 359.96486 * 10 9 8 37 37 H 1.08000 * 120.00051 * 179.97438 * 11 10 9 38 38 H 0.96996 * 120.00136 * 179.97438 * 17 16 14 39 39 H 1.07996 * 119.99809 * 180.25252 * 22 12 11 40 40 H 1.08001 * 120.00161 * 179.72091 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0748 -1.3341 2.5632 7 7 5.5389 -1.2309 2.6247 8 7 2.0183 -0.6905 -1.1963 9 6 2.1518 0.0068 -2.4003 10 6 2.6154 -0.6479 -3.5348 11 6 2.7466 0.0407 -4.7236 12 6 2.4204 1.3895 -4.7847 13 8 2.5550 2.0682 -5.9532 14 6 3.1172 1.4063 -6.9842 15 1 3.3623 0.3593 -6.8843 16 6 3.3807 2.0696 -8.1726 17 7 3.0825 3.3453 -8.2941 18 14 4.1591 1.1522 -9.6015 19 1 3.2782 0.0272 -10.0062 20 1 4.3364 2.0797 -10.7475 21 1 5.4820 0.6203 -9.1864 22 6 1.9519 2.0430 -3.6520 23 6 1.8205 1.3548 -2.4630 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6054 -0.2618 2.1369 28 1 1.7517 -1.7716 1.2055 29 1 3.9994 -1.0729 0.4259 30 1 3.8533 0.4369 1.3573 31 1 3.6402 -0.8742 3.4507 32 1 3.7865 -2.3844 2.5199 33 1 5.9004 -1.6999 3.4416 34 1 5.9626 -1.5926 1.7834 35 1 2.2490 -1.6317 -1.1527 36 1 2.8732 -1.6955 -3.4862 37 1 3.1074 -0.4680 -5.6053 38 1 3.2672 3.8095 -9.1255 39 1 1.6944 3.0907 -3.7008 40 1 1.4606 1.8640 -1.5812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380082491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:17 Heat of formation + Delta-G solvation = -35.444458 kcal Electronic energy + Delta-G solvation = -19310.848553 eV Core-core repulsion = 16317.638027 eV Total energy + Delta-G solvation = -2993.210526 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.75720 -39.22344 -37.54113 -35.85904 -34.19956 -32.81728 -31.79149 -30.56472 -28.54788 -27.04464 -25.81828 -23.92616 -22.69453 -22.18330 -21.38455 -19.58793 -18.89278 -17.87962 -17.01208 -16.69119 -16.25077 -15.94484 -15.57296 -15.50157 -15.37213 -15.00069 -14.49770 -14.38933 -14.07763 -13.85339 -13.49846 -13.47028 -13.29057 -13.00634 -12.65125 -12.58305 -12.42318 -12.23269 -12.10105 -11.96118 -11.57578 -11.51663 -11.07109 -10.88389 -10.15458 -9.75548 -9.60040 -8.38306 -7.88877 -6.01923 0.60468 0.96333 1.36673 1.48285 1.53074 2.23543 2.70975 2.92894 3.27225 3.55355 3.69138 3.94361 4.05913 4.16471 4.18225 4.25447 4.41069 4.54144 4.60162 4.62548 4.70623 4.74420 4.89296 4.91940 4.98050 5.02550 5.10218 5.16394 5.29351 5.33066 5.40420 5.47284 5.53794 5.58562 5.80516 6.02143 6.12618 6.25105 6.57959 6.67812 7.06659 7.11278 7.95034 8.86217 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.028440 B = 0.003549 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.300646 B = 7888.431486 C = 8383.902363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 H 0.066 0.934 4 C -0.112 4.112 5 C -0.114 4.114 6 C 0.063 3.937 7 N -0.867 5.867 8 N -0.737 5.737 9 C 0.158 3.842 10 C -0.148 4.148 11 C -0.193 4.193 12 C 0.060 3.940 13 O -0.244 6.244 14 C -0.407 4.407 15 H 0.098 0.902 16 C -0.029 4.029 17 N -0.928 5.928 18 Si 1.017 2.983 19 H -0.258 1.258 20 H -0.273 1.273 21 H -0.258 1.258 22 C -0.157 4.157 23 C -0.146 4.146 24 H 0.040 0.960 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.349 0.651 34 H 0.343 0.657 35 H 0.401 0.599 36 H 0.138 0.862 37 H 0.118 0.882 38 H 0.270 0.730 39 H 0.110 0.890 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 -12.725 21.029 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.044 3.956 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.068 4.068 7 N -0.398 5.398 8 N -0.371 5.371 9 C 0.057 3.943 10 C -0.170 4.170 11 C -0.213 4.213 12 C 0.011 3.989 13 O -0.152 6.152 14 C -0.484 4.484 15 H 0.115 0.885 16 C -0.225 4.225 17 N -0.568 5.568 18 Si 0.836 3.164 19 H -0.182 1.182 20 H -0.198 1.198 21 H -0.183 1.183 22 C -0.176 4.176 23 C -0.169 4.169 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.236 0.764 36 H 0.156 0.844 37 H 0.136 0.864 38 H 0.078 0.922 39 H 0.129 0.871 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.040 -11.429 21.034 23.961 hybrid contribution 0.380 -1.259 -1.149 1.747 sum -0.659 -12.688 19.885 23.597 Atomic orbital electron populations 1.22270 0.95822 1.02395 1.01961 1.20922 0.93485 0.96656 0.84504 0.91614 1.21739 0.94811 1.01571 0.96898 1.21505 0.95598 1.00701 0.97389 1.21803 0.88044 0.98323 0.98584 1.58711 1.06123 1.66379 1.08592 1.44425 1.74953 1.11866 1.05897 1.17503 0.98345 0.91331 0.87108 1.20486 1.05397 1.00078 0.91063 1.21047 1.07069 0.93858 0.99325 1.19724 0.99414 0.92275 0.87515 1.83930 1.73220 1.40640 1.17384 1.21719 1.40014 0.95627 0.91013 0.88487 1.26535 0.97991 0.96854 1.01103 1.70198 1.47993 1.10779 1.27800 0.84678 0.78778 0.77473 0.75448 1.18224 1.19782 1.18283 1.20234 1.06228 0.99823 0.91349 1.20446 1.06301 0.93369 0.96750 0.94122 0.92097 0.90400 0.89112 0.90466 0.92739 0.92934 0.90814 0.94775 0.83797 0.84430 0.76399 0.84400 0.86443 0.92154 0.87150 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.43 71.98 0.68 -2.18 16 2 C 0.15 2.71 2.27 44.99 0.10 2.81 16 3 H 0.07 1.37 6.48 -2.39 -0.02 1.35 16 4 C -0.11 -1.42 4.75 30.60 0.15 -1.28 16 5 C -0.11 -1.77 5.36 30.60 0.16 -1.61 16 6 C 0.06 0.82 6.79 86.30 0.59 1.41 16 7 N -0.87 -12.29 9.62 -186.71 -1.80 -14.09 16 8 N -0.74 -16.51 4.70 -318.79 -1.50 -18.01 16 9 C 0.16 5.06 6.64 38.22 0.25 5.31 16 10 C -0.15 -5.23 9.89 22.39 0.22 -5.01 16 11 C -0.19 -8.72 9.16 22.37 0.20 -8.51 16 12 C 0.06 3.13 6.65 22.59 0.15 3.28 16 13 O -0.24 -15.30 9.76 -23.00 -0.22 -15.52 16 14 C -0.41 -24.64 9.48 67.91 0.64 -23.99 16 15 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 16 C -0.03 -1.70 5.49 84.82 0.47 -1.23 16 17 N -0.93 -59.08 13.67 21.61 0.30 -58.78 16 18 Si 1.02 44.39 29.55 68.60 2.03 46.41 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 22 C -0.16 -7.00 9.98 22.38 0.22 -6.77 16 23 C -0.15 -5.17 8.84 22.39 0.20 -4.97 16 24 H 0.04 0.89 7.70 -2.38 -0.02 0.87 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.05 0.97 7.75 -2.39 -0.02 0.95 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.03 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.35 3.64 9.08 -89.70 -0.81 2.83 16 34 H 0.34 4.61 8.99 -89.70 -0.81 3.80 16 35 H 0.40 7.49 8.61 -92.71 -0.80 6.69 16 36 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 37 H 0.12 5.38 5.63 -2.91 -0.02 5.36 16 38 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 39 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 40 H 0.14 4.10 6.10 -2.91 -0.02 4.08 16 Total: -1.00 -73.71 330.33 1.48 -72.23 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -1.35 Total: 30.50 kcal Atomic # 6 Polarization: -46.78 SS G_CDS: 4.04 Total: -42.75 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -3.00 Total: -90.88 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.22 Total: -15.52 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -73.71 1.48 -72.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380082491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.782 kcal (2) G-P(sol) polarization free energy of solvation -73.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds