Wall clock time and date at job start Mon Mar 30 2020 07:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.82798 * 2 1 4 4 H 1.09003 * 109.46942 * 292.45825 * 3 2 1 5 5 C 1.53005 * 109.47412 * 172.45820 * 3 2 1 6 6 C 1.52995 * 109.47445 * 239.99697 * 5 3 2 7 7 C 1.53001 * 109.47144 * 300.00245 * 6 5 3 8 8 C 1.52992 * 109.47193 * 59.99850 * 7 6 5 9 9 C 1.52999 * 109.47350 * 52.45722 * 3 2 1 10 10 C 1.53001 * 109.46827 * 60.00305 * 9 3 2 11 11 C 1.52997 * 109.47432 * 60.00118 * 10 9 3 12 12 C 1.54388 * 109.83162 * 239.10736 * 2 1 3 13 13 C 1.55298 * 102.25529 * 261.75855 * 12 2 1 14 14 C 1.54949 * 100.98278 * 325.84398 * 13 12 2 15 15 H 1.09000 * 110.30834 * 277.55348 * 14 13 12 16 16 C 1.50696 * 110.31059 * 155.38258 * 14 13 12 17 17 H 1.08000 * 120.00290 * 359.97438 * 16 14 13 18 18 C 1.37885 * 119.99830 * 180.02562 * 16 14 13 19 19 N 1.31514 * 119.99745 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99724 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47081 * 90.00009 * 20 18 16 22 22 H 1.48501 * 109.46948 * 209.99705 * 20 18 16 23 23 H 1.48497 * 109.47157 * 329.99643 * 20 18 16 24 24 O 1.43238 * 109.90451 * 120.93385 * 2 1 3 25 25 H 1.08994 * 109.47245 * 180.18453 * 1 2 3 26 26 H 1.08995 * 109.46761 * 300.19249 * 1 2 3 27 27 H 1.09002 * 109.46878 * 60.18496 * 1 2 3 28 28 H 1.08998 * 109.47047 * 0.02562 * 5 3 2 29 29 H 1.09006 * 109.46907 * 119.99452 * 5 3 2 30 30 H 1.08999 * 109.47176 * 179.97438 * 6 5 3 31 31 H 1.08999 * 109.46637 * 299.99672 * 7 6 5 32 32 H 1.09003 * 109.46672 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.46868 * 239.99980 * 8 7 6 34 34 H 1.08999 * 109.47571 * 120.00381 * 8 7 6 35 35 H 1.08991 * 109.46996 * 300.00557 * 9 3 2 36 36 H 1.09001 * 109.47011 * 180.02562 * 10 9 3 37 37 H 1.09002 * 109.46998 * 299.99733 * 10 9 3 38 38 H 1.08998 * 109.47261 * 240.00334 * 11 10 9 39 39 H 1.08997 * 109.47497 * 119.99649 * 11 10 9 40 40 H 1.09003 * 110.84587 * 143.56218 * 12 2 1 41 41 H 1.09000 * 110.84223 * 19.94724 * 12 2 1 42 42 H 1.08996 * 111.12964 * 83.78420 * 13 12 2 43 43 H 1.09002 * 111.12619 * 207.90720 * 13 12 2 44 44 H 0.97001 * 119.99043 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0489 1.4392 0.0000 4 1 1.8028 1.9142 -0.9498 5 6 3.5672 1.4340 0.1893 6 6 3.9255 2.2084 1.4592 7 6 3.4323 3.6512 1.3330 8 6 1.9141 3.6565 1.1437 9 6 1.3951 2.2172 1.1437 10 6 1.7405 1.5505 2.4768 11 6 3.2587 1.5453 2.6662 12 6 2.0538 -0.7457 -1.2463 13 6 2.3702 -2.1558 -0.6779 14 6 2.8442 -1.7978 0.7532 15 1 3.8930 -1.5013 0.7413 16 6 2.6410 -2.9687 1.6798 17 1 2.2160 -3.8876 1.3037 18 6 2.9966 -2.8665 3.0081 19 7 3.5136 -1.7473 3.4661 20 14 2.7440 -4.3177 4.1568 21 1 3.9606 -5.1692 4.1535 22 1 2.4911 -3.8211 5.5333 23 1 1.5796 -5.1162 3.6969 24 8 2.0176 -0.6923 1.1552 25 1 -0.3633 -1.0276 0.0033 26 1 -0.3633 0.5168 0.8882 27 1 -0.3633 0.5110 -0.8917 28 1 3.9187 0.4061 0.2788 29 1 4.0422 1.9064 -0.6706 30 1 5.0071 2.2043 1.5943 31 1 3.9073 4.1236 0.4731 32 1 3.6880 4.2030 2.2376 33 1 1.6680 4.1314 0.1940 34 1 1.4482 4.2107 1.9585 35 1 0.3135 2.2209 1.0089 36 1 1.2744 2.1045 3.2916 37 1 1.3708 0.5252 2.4769 38 1 3.6101 0.5174 2.7560 39 1 3.5140 2.0970 3.5708 40 1 2.9563 -0.2711 -1.6315 41 1 1.2846 -0.8015 -2.0165 42 1 1.4760 -2.7785 -0.6513 43 1 3.1655 -2.6389 -1.2457 44 1 3.7641 -1.6757 4.4005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382118902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:32 Heat of formation + Delta-G solvation = -82.915631 kcal Electronic energy + Delta-G solvation = -22770.729458 eV Core-core repulsion = 19879.000771 eV Total energy + Delta-G solvation = -2891.728687 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.86131 -39.16616 -34.98740 -33.35974 -32.65435 -31.82497 -31.25102 -30.02493 -28.22432 -25.24596 -23.44368 -23.22304 -22.66407 -21.76925 -20.37191 -18.54447 -17.51809 -17.33996 -17.00837 -16.49793 -16.20567 -15.74140 -15.18243 -14.63239 -14.08004 -13.96368 -13.56602 -13.54694 -13.23924 -12.98760 -12.83898 -12.80011 -12.70550 -12.63836 -12.55739 -12.51372 -12.36608 -12.21551 -11.98601 -11.88752 -11.45387 -11.29196 -11.06718 -10.82198 -10.61200 -10.41466 -10.40166 -10.23236 -9.46722 -8.01338 -6.20141 1.40697 1.42826 1.51365 2.45521 3.15140 3.64774 3.82300 3.87962 3.93654 4.09026 4.24906 4.37522 4.46561 4.59704 4.60045 4.61839 4.66073 4.69678 4.73635 4.80668 4.85031 4.89795 4.92227 4.95867 5.03253 5.05389 5.09615 5.20001 5.22756 5.28056 5.31766 5.36572 5.47245 5.58235 5.59104 5.67593 5.72117 5.79016 5.81813 5.91509 6.05352 6.22776 6.39016 6.77689 7.29714 7.53939 9.01484 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.008581 C = 0.007210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.554203 B = 3262.422100 C = 3882.371244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 C -0.072 4.072 4 H 0.084 0.916 5 C -0.102 4.102 6 C -0.080 4.080 7 C -0.106 4.106 8 C -0.107 4.107 9 C -0.073 4.073 10 C -0.101 4.101 11 C -0.114 4.114 12 C -0.136 4.136 13 C -0.144 4.144 14 C 0.210 3.790 15 H -0.008 1.008 16 C -0.556 4.556 17 H 0.051 0.949 18 C 0.037 3.963 19 N -0.875 5.875 20 Si 0.945 3.055 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.274 1.274 24 O -0.349 6.349 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 9.980 -7.599 12.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.048 3.952 3 C -0.091 4.091 4 H 0.103 0.897 5 C -0.139 4.139 6 C -0.098 4.098 7 C -0.143 4.143 8 C -0.144 4.144 9 C -0.092 4.092 10 C -0.139 4.139 11 C -0.152 4.152 12 C -0.174 4.174 13 C -0.182 4.182 14 C 0.154 3.846 15 H 0.010 0.990 16 C -0.593 4.593 17 H 0.069 0.931 18 C -0.167 4.167 19 N -0.512 5.512 20 Si 0.771 3.229 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.199 1.199 24 O -0.269 6.269 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.043 10.130 -7.235 12.815 hybrid contribution 0.212 -1.233 0.941 1.566 sum -2.831 8.897 -6.294 11.260 Atomic orbital electron populations 1.22079 0.95027 1.01061 1.01995 1.22210 0.93686 0.92339 0.86986 1.21396 0.94882 0.94450 0.98345 0.89745 1.21501 0.95988 0.99684 0.96747 1.20933 0.97989 0.95517 0.95392 1.21506 0.96311 0.95054 1.01434 1.21517 0.95390 0.95566 1.01923 1.21020 0.98998 0.94670 0.94486 1.21438 0.95969 1.00676 0.95785 1.21500 0.96228 1.02012 0.95461 1.23120 1.01517 0.95014 0.97740 1.23197 1.00436 0.97037 0.97552 1.20247 0.89288 0.84971 0.90046 0.99032 1.21446 1.43858 0.98470 0.95561 0.93098 1.25662 0.93999 0.97570 0.99451 1.70032 1.40713 1.25862 1.14600 0.85793 0.78387 0.80303 0.78405 1.20151 1.21203 1.19854 1.88827 1.66964 1.43586 1.27533 0.94197 0.92806 0.90213 0.93834 0.91844 0.93349 0.91130 0.92529 0.90669 0.92129 0.91178 0.94982 0.91704 0.90511 0.95420 0.90928 0.89472 0.92519 0.91733 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 8.14 71.98 0.59 -4.10 16 2 C 0.09 3.19 0.48 -10.33 0.00 3.19 16 3 C -0.07 -2.28 1.77 -10.79 -0.02 -2.30 16 4 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 5 C -0.10 -3.49 4.27 30.59 0.13 -3.36 16 6 C -0.08 -2.75 3.20 -10.79 -0.03 -2.78 16 7 C -0.11 -2.85 5.71 30.59 0.17 -2.67 16 8 C -0.11 -2.73 5.71 30.59 0.17 -2.55 16 9 C -0.07 -2.29 2.19 -10.79 -0.02 -2.31 16 10 C -0.10 -3.97 5.03 30.59 0.15 -3.82 16 11 C -0.11 -4.71 5.30 30.60 0.16 -4.55 16 12 C -0.14 -4.56 5.73 31.85 0.18 -4.38 16 13 C -0.14 -5.89 6.53 32.05 0.21 -5.68 16 14 C 0.21 10.58 2.59 30.51 0.08 10.66 16 15 H -0.01 -0.44 7.03 -2.39 -0.02 -0.46 16 16 C -0.56 -31.12 8.80 25.60 0.23 -30.90 16 17 H 0.05 2.83 7.76 -2.91 -0.02 2.80 16 18 C 0.04 2.04 5.43 84.66 0.46 2.50 16 19 N -0.88 -50.21 11.50 21.45 0.25 -49.97 16 20 Si 0.94 44.34 29.54 68.60 2.03 46.36 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 24 O -0.35 -16.46 5.28 -148.98 -0.79 -17.25 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.79 6.10 -2.39 -0.01 1.77 16 27 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.04 1.82 4.90 -2.39 -0.01 1.81 16 29 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 35 H 0.07 2.05 6.35 -2.39 -0.02 2.04 16 36 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 3.07 5.19 -2.39 -0.01 3.06 16 38 H 0.08 3.86 6.09 -2.39 -0.01 3.85 16 39 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 2.29 7.01 -2.39 -0.02 2.28 16 41 H 0.09 2.43 7.82 -2.39 -0.02 2.41 16 42 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 43 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -59.99 310.80 4.90 -55.09 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.95 Total: 18.81 kcal Atomic # 6 Polarization: -55.51 SS G_CDS: 2.46 Total: -53.06 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.25 Total: -49.97 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.79 Total: -17.25 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -59.99 4.90 -55.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382118902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.822 kcal (2) G-P(sol) polarization free energy of solvation -59.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds