Wall clock time and date at job start Mon Mar 30 2020 07:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.86742 * 2 1 4 4 H 1.09001 * 109.46989 * 293.22443 * 3 2 1 5 5 C 1.53001 * 109.46996 * 173.22605 * 3 2 1 6 6 C 1.52989 * 109.47342 * 239.99932 * 5 3 2 7 7 C 1.53006 * 109.46982 * 60.00158 * 6 5 3 8 8 C 1.52993 * 109.47059 * 299.99883 * 7 6 5 9 9 C 1.52992 * 109.47061 * 53.23017 * 3 2 1 10 10 C 1.52998 * 109.47381 * 180.02562 * 9 3 2 11 11 C 1.53001 * 109.47214 * 300.00294 * 6 5 3 12 12 C 1.54100 * 109.88125 * 238.99603 * 2 1 3 13 13 C 1.54811 * 104.18643 * 242.45435 * 12 2 1 14 14 C 1.54992 * 102.09398 * 20.87631 * 13 12 2 15 15 H 1.09006 * 110.61780 * 81.47708 * 14 13 12 16 16 C 1.50701 * 110.61736 * 204.31707 * 14 13 12 17 17 H 1.07992 * 120.00139 * 0.02562 * 16 14 13 18 18 C 1.37885 * 119.99840 * 180.02562 * 16 14 13 19 19 N 1.31520 * 119.99832 * 359.97438 * 18 16 14 20 20 Si 1.86793 * 119.99914 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47350 * 59.99889 * 20 18 16 22 22 H 1.48495 * 109.47037 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47130 * 299.99650 * 20 18 16 24 24 O 1.43741 * 109.88210 * 121.00639 * 2 1 3 25 25 H 1.08996 * 109.47273 * 60.00473 * 1 2 3 26 26 H 1.09007 * 109.47030 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47233 * 299.99474 * 1 2 3 28 28 H 1.09001 * 109.47069 * 0.02562 * 5 3 2 29 29 H 1.09008 * 109.46788 * 119.99722 * 5 3 2 30 30 H 1.08995 * 109.47481 * 180.02562 * 6 5 3 31 31 H 1.09006 * 109.46581 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.47057 * 60.00431 * 7 6 5 33 33 H 1.08998 * 109.47648 * 240.00230 * 8 7 6 34 34 H 1.09004 * 109.46823 * 120.00200 * 8 7 6 35 35 H 1.09011 * 109.47039 * 299.99771 * 9 3 2 36 36 H 1.09001 * 109.47067 * 59.99182 * 10 9 3 37 37 H 1.09001 * 109.47680 * 179.97438 * 10 9 3 38 38 H 1.09002 * 109.47538 * 179.97438 * 11 6 5 39 39 H 1.08998 * 109.47007 * 299.99597 * 11 6 5 40 40 H 1.09002 * 110.48617 * 1.12719 * 12 2 1 41 41 H 1.08996 * 110.48861 * 123.64206 * 12 2 1 42 42 H 1.08999 * 110.90716 * 139.07681 * 13 12 2 43 43 H 1.09000 * 110.90278 * 262.64178 * 13 12 2 44 44 H 0.96999 * 119.99705 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0499 1.4390 0.0000 4 1 1.7923 1.9184 -0.9444 5 6 3.5704 1.4318 0.1701 6 6 3.9453 2.2001 1.4389 7 6 3.2933 1.5319 2.6511 8 6 1.7729 1.5391 2.4810 9 6 1.4112 2.2120 1.1555 10 6 1.9306 3.6512 1.1551 11 6 3.4516 3.6438 1.3255 12 6 2.0540 -0.7465 -1.2421 13 6 2.8358 -1.9493 -0.6601 14 6 2.2335 -2.0702 0.7628 15 1 1.2879 -2.6116 0.7347 16 6 3.2044 -2.7493 1.6941 17 1 4.1675 -3.0728 1.3279 18 6 2.8632 -2.9575 3.0137 19 7 1.6905 -2.5629 3.4598 20 14 4.0669 -3.7985 4.1682 21 1 5.3191 -3.0038 4.2425 22 1 3.4647 -3.9021 5.5215 23 1 4.3737 -5.1591 3.6581 24 8 2.0188 -0.6963 1.1586 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 3.9222 0.4032 0.2505 29 1 4.0349 1.9078 -0.6935 30 1 5.0285 2.1954 1.5599 31 1 3.5601 2.0796 3.5550 32 1 3.6451 0.5033 2.7319 33 1 1.3178 2.0899 3.3042 34 1 1.4025 0.5139 2.4811 35 1 0.3279 2.2172 1.0343 36 1 1.6726 4.1303 0.2107 37 1 1.4752 4.2021 1.9781 38 1 3.7183 4.1911 2.2297 39 1 3.9161 4.1199 0.4620 40 1 1.2237 -1.0929 -1.8575 41 1 2.7157 -0.1036 -1.8226 42 1 2.6477 -2.8528 -1.2402 43 1 3.9033 -1.7338 -0.6143 44 1 1.4503 -2.7097 4.3880 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382118929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:37 Heat of formation + Delta-G solvation = -85.937713 kcal Electronic energy + Delta-G solvation = -22692.193883 eV Core-core repulsion = 19800.334148 eV Total energy + Delta-G solvation = -2891.859735 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.85585 -39.24273 -34.98860 -33.39690 -32.71474 -31.81929 -31.32753 -29.97950 -28.36723 -25.36644 -23.45767 -23.26770 -22.53920 -21.86660 -20.41163 -18.64279 -17.40432 -17.29238 -16.98374 -16.61438 -16.17556 -15.86170 -15.15465 -14.79029 -14.32361 -13.97166 -13.64121 -13.60632 -13.34614 -12.94067 -12.84094 -12.77813 -12.74093 -12.67892 -12.65253 -12.51296 -12.40861 -12.22180 -11.96090 -11.86452 -11.58074 -11.35183 -11.08807 -10.85964 -10.64299 -10.47951 -10.43868 -10.22172 -9.66985 -8.10090 -6.26879 1.39111 1.40906 1.47671 2.42028 3.11488 3.64972 3.78213 3.85352 3.93129 4.12227 4.21860 4.34214 4.45688 4.52325 4.56759 4.61430 4.62797 4.66430 4.69498 4.77027 4.77722 4.84324 4.88371 4.91705 4.97109 5.01666 5.09964 5.19452 5.21586 5.25341 5.29587 5.35985 5.43263 5.54362 5.57968 5.63466 5.69690 5.71409 5.75704 5.80809 5.89249 6.05199 6.32532 6.72233 7.13589 7.46410 8.96933 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.008665 C = 0.007383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.246547 B = 3230.696294 C = 3791.541281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.084 3.916 3 C -0.061 4.061 4 H 0.089 0.911 5 C -0.101 4.101 6 C -0.081 4.081 7 C -0.096 4.096 8 C -0.114 4.114 9 C -0.074 4.074 10 C -0.107 4.107 11 C -0.105 4.105 12 C -0.136 4.136 13 C -0.139 4.139 14 C 0.202 3.798 15 H -0.015 1.015 16 C -0.544 4.544 17 H 0.056 0.944 18 C 0.033 3.967 19 N -0.893 5.893 20 Si 0.946 3.054 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.268 1.268 24 O -0.342 6.342 25 H 0.078 0.922 26 H 0.030 0.970 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.029 0.971 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.611 11.889 -7.631 14.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 C -0.080 4.080 4 H 0.107 0.893 5 C -0.138 4.138 6 C -0.099 4.099 7 C -0.133 4.133 8 C -0.151 4.151 9 C -0.092 4.092 10 C -0.145 4.145 11 C -0.142 4.142 12 C -0.173 4.173 13 C -0.177 4.177 14 C 0.146 3.854 15 H 0.002 0.998 16 C -0.581 4.581 17 H 0.074 0.926 18 C -0.169 4.169 19 N -0.531 5.531 20 Si 0.771 3.229 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.193 1.193 24 O -0.261 6.261 25 H 0.097 0.903 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.524 11.988 -7.274 14.032 hybrid contribution 0.339 -1.206 0.961 1.578 sum 0.864 10.782 -6.314 12.525 Atomic orbital electron populations 1.22241 0.96411 1.00543 1.01876 1.22230 0.92841 0.93373 0.87237 1.21239 0.95315 0.92910 0.98502 0.89273 1.21470 0.95435 0.99921 0.96986 1.20963 0.98518 0.95608 0.94822 1.21259 0.96282 0.98796 0.96995 1.21572 0.95797 1.01439 0.96290 1.21018 0.98995 0.94924 0.94312 1.21537 0.95650 0.95190 1.02091 1.21513 0.95978 0.94860 1.01873 1.22945 0.99912 0.96921 0.97537 1.23045 0.99555 0.97746 0.97380 1.20417 0.92419 0.82111 0.90471 0.99770 1.21289 1.02561 1.38380 0.95889 0.92605 1.25722 0.96372 0.95172 0.99640 1.70135 1.21523 1.45881 1.15548 0.85824 0.79555 0.79340 0.78165 1.19912 1.21019 1.19273 1.89310 1.84822 1.21342 1.30674 0.90291 0.95060 0.93034 0.93508 0.91199 0.92215 0.93834 0.95199 0.94472 0.91326 0.91562 0.90560 0.92092 0.92168 0.90694 0.90932 0.89827 0.92016 0.92468 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 8.06 71.98 0.58 -4.77 16 2 C 0.08 3.08 0.35 -10.42 0.00 3.08 16 3 C -0.06 -1.89 1.65 -10.79 -0.02 -1.91 16 4 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 5 C -0.10 -3.20 4.44 30.59 0.14 -3.07 16 6 C -0.08 -2.52 3.19 -10.79 -0.03 -2.55 16 7 C -0.10 -3.68 5.30 30.59 0.16 -3.52 16 8 C -0.11 -4.39 5.07 30.59 0.16 -4.23 16 9 C -0.07 -2.27 2.20 -10.80 -0.02 -2.29 16 10 C -0.11 -2.59 5.71 30.61 0.17 -2.41 16 11 C -0.10 -2.55 5.71 30.61 0.17 -2.38 16 12 C -0.14 -4.58 5.72 31.58 0.18 -4.40 16 13 C -0.14 -5.76 6.10 31.89 0.19 -5.56 16 14 C 0.20 10.40 3.03 30.53 0.09 10.49 16 15 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 16 C -0.54 -30.81 8.82 25.60 0.23 -30.59 16 17 H 0.06 3.10 7.77 -2.91 -0.02 3.08 16 18 C 0.03 1.90 5.44 84.66 0.46 2.36 16 19 N -0.89 -53.45 13.13 21.45 0.28 -53.17 16 20 Si 0.95 44.78 29.54 68.60 2.03 46.80 16 21 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 O -0.34 -16.39 5.21 -148.98 -0.78 -17.16 16 25 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.05 1.86 6.24 -2.38 -0.01 1.85 16 28 H 0.05 1.83 6.00 -2.39 -0.01 1.81 16 29 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.03 1.42 7.71 -2.39 -0.02 1.40 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 3.32 5.26 -2.39 -0.01 3.31 16 35 H 0.07 1.98 6.36 -2.38 -0.02 1.97 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 2.23 7.70 -2.39 -0.02 2.21 16 41 H 0.08 2.43 7.31 -2.39 -0.02 2.41 16 42 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.06 2.38 7.78 -2.39 -0.02 2.36 16 44 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -62.53 316.29 4.94 -57.59 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.95 Total: 17.68 kcal Atomic # 6 Polarization: -54.20 SS G_CDS: 2.46 Total: -51.74 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.28 Total: -53.17 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.78 Total: -17.16 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -62.53 4.94 -57.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382118929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.344 kcal (2) G-P(sol) polarization free energy of solvation -62.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds