Wall clock time and date at job start Mon Mar 30 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00108 * 2 1 4 4 C 1.53002 * 109.47256 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47035 * 64.99491 * 4 3 2 6 6 C 1.46496 * 119.99759 * 90.00495 * 5 4 3 7 7 C 1.50695 * 109.47390 * 89.99689 * 6 5 4 8 8 H 1.08001 * 120.00425 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99997 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99438 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00098 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46633 * 89.99782 * 11 9 7 13 13 H 1.48493 * 109.46760 * 209.99955 * 11 9 7 14 14 H 1.48500 * 109.46782 * 329.99966 * 11 9 7 15 15 C 1.39170 * 120.00158 * 270.00000 * 5 4 3 16 16 C 1.39477 * 120.86273 * 359.72725 * 15 5 4 17 17 C 1.37902 * 119.06233 * 179.73107 * 16 15 5 18 18 C 1.50696 * 119.57431 * 180.24686 * 17 16 15 19 19 N 1.31991 * 120.84099 * 0.55064 * 17 16 15 20 20 C 1.31994 * 121.91588 * 359.71792 * 19 17 16 21 21 C 1.50698 * 119.58479 * 179.97438 * 20 19 17 22 22 C 1.37900 * 120.83934 * 0.02562 * 20 19 17 23 23 H 1.09009 * 109.46884 * 60.00274 * 1 2 3 24 24 H 1.09000 * 109.47167 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47256 * 300.00496 * 1 2 3 26 26 H 1.08997 * 109.47286 * 59.99841 * 3 2 1 27 27 H 1.09005 * 109.46914 * 299.99505 * 3 2 1 28 28 H 1.09004 * 109.46930 * 304.99721 * 4 3 2 29 29 H 1.09000 * 109.47312 * 184.99665 * 4 3 2 30 30 H 1.09001 * 109.47057 * 210.00204 * 6 5 4 31 31 H 1.08999 * 109.47333 * 329.99764 * 6 5 4 32 32 H 0.97003 * 119.99670 * 179.97438 * 10 9 7 33 33 H 1.07995 * 120.46876 * 359.97020 * 16 15 5 34 34 H 1.08997 * 109.47297 * 270.29380 * 18 17 16 35 35 H 1.09003 * 109.47412 * 30.30101 * 18 17 16 36 36 H 1.09003 * 109.46694 * 150.29489 * 18 17 16 37 37 H 1.09000 * 109.47160 * 270.02873 * 21 20 19 38 38 H 1.09003 * 109.46472 * 30.02013 * 21 20 19 39 39 H 1.08991 * 109.47684 * 150.02356 * 21 20 19 40 40 H 1.08005 * 120.46618 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.2884 1.3996 -2.4130 7 6 5.7462 1.7800 -2.3817 8 1 6.3776 1.4336 -1.5769 9 6 6.2742 2.5696 -3.3812 10 7 7.5464 2.9020 -3.3535 11 14 5.1824 3.1684 -4.7736 12 1 4.5786 4.4734 -4.4029 13 1 5.9957 3.3311 -6.0053 14 1 4.1050 2.1764 -5.0193 15 6 4.0998 -0.8198 -1.3357 16 6 3.8133 -1.6322 -0.2388 17 6 3.9425 -2.9993 -0.3657 18 6 3.6306 -3.8883 0.8104 19 7 4.3416 -3.5386 -1.5024 20 6 4.6273 -2.8037 -2.5610 21 6 5.0791 -3.4747 -3.8326 22 6 4.5188 -1.4297 -2.5180 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8901 28 1 3.8507 0.5685 0.8428 29 1 3.9785 2.1765 0.0902 30 1 4.0772 0.8444 -3.3269 31 1 3.6769 2.3015 -2.3864 32 1 7.9180 3.4571 -4.0568 33 1 3.4911 -1.1971 0.6956 34 1 4.5326 -4.0345 1.4046 35 1 2.8619 -3.4206 1.4257 36 1 3.2716 -4.8529 0.4515 37 1 6.1650 -3.5687 -3.8278 38 1 4.6290 -4.4652 -3.9003 39 1 4.7700 -2.8758 -4.6891 40 1 4.7537 -0.8343 -3.3879 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383004948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:50 Heat of formation + Delta-G solvation = -10.664260 kcal Electronic energy + Delta-G solvation = -20570.497305 eV Core-core repulsion = 17578.361329 eV Total energy + Delta-G solvation = -2992.135976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.71295 -37.92086 -36.22678 -33.15003 -32.70249 -31.09549 -29.81503 -28.51424 -27.12600 -26.02242 -25.89841 -22.82225 -22.34370 -20.88124 -19.31175 -17.00217 -16.74135 -16.43476 -15.71368 -15.49756 -14.91690 -14.60251 -14.14947 -14.12195 -13.76383 -13.47618 -12.84238 -12.74764 -12.55985 -12.34595 -12.25980 -12.06521 -11.68333 -11.65100 -11.56087 -11.45938 -11.17834 -10.93717 -10.71020 -10.44000 -10.22589 -9.75052 -9.54516 -9.30608 -8.71611 -8.70307 -8.03865 -6.73476 -6.19414 -4.19895 1.93912 2.37655 3.16701 3.25761 3.26496 3.82806 3.98658 4.27584 4.56063 4.87298 5.10500 5.21433 5.24367 5.34307 5.41781 5.47974 5.50032 5.65163 5.68029 5.78052 5.86607 5.91592 5.94787 6.05898 6.09061 6.13167 6.14533 6.23424 6.40572 6.46772 6.65612 6.69970 6.90114 6.93877 7.28526 7.44272 7.47841 7.97106 8.23005 8.44952 8.87354 8.87972 9.40109 10.93581 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.007651 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.401019 B = 3658.862106 C = 4815.523322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.040 3.960 4 C 0.126 3.874 5 N -0.592 5.592 6 C 0.221 3.779 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.074 3.926 10 N -0.893 5.893 11 Si 0.871 3.129 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.265 1.265 15 C 0.280 3.720 16 C -0.243 4.243 17 C 0.149 3.851 18 C -0.094 4.094 19 N -0.542 5.542 20 C 0.151 3.849 21 C -0.096 4.096 22 C -0.241 4.241 23 H 0.035 0.965 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.032 0.968 31 H 0.023 0.977 32 H 0.266 0.734 33 H 0.125 0.875 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.818 -6.364 5.641 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.038 4.038 4 C 0.001 3.999 5 N -0.298 5.298 6 C 0.100 3.900 7 C -0.575 4.575 8 H 0.095 0.905 9 C -0.129 4.129 10 N -0.530 5.530 11 Si 0.697 3.303 12 H -0.201 1.201 13 H -0.208 1.208 14 H -0.189 1.189 15 C 0.166 3.834 16 C -0.268 4.268 17 C 0.012 3.988 18 C -0.152 4.152 19 N -0.258 5.258 20 C 0.015 3.985 21 C -0.154 4.154 22 C -0.267 4.267 23 H 0.054 0.946 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.143 0.857 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.491 -7.078 5.475 14.564 hybrid contribution -0.704 1.892 -0.743 2.151 sum -12.195 -5.186 4.733 14.072 Atomic orbital electron populations 1.22672 0.82176 1.02252 0.99328 1.88036 1.18656 1.27450 1.95240 1.23213 0.95580 0.85090 0.99936 1.21417 0.90734 0.99905 0.87803 1.46556 1.68468 1.02093 1.12669 1.19678 0.96696 0.89597 0.84050 1.21449 0.93142 1.31873 1.11026 0.90482 1.24884 0.94865 0.95546 0.97569 1.69897 1.12325 1.36820 1.33999 0.86932 0.81069 0.79758 0.82500 1.20055 1.20812 1.18932 1.17933 0.88593 0.84027 0.92833 1.21232 1.12606 0.93685 0.99291 1.20686 0.93882 0.91197 0.93005 1.20572 1.01392 0.98736 0.94462 1.67226 1.18404 1.40470 0.99683 1.20737 0.93888 0.89948 0.93878 1.20600 1.01443 1.00313 0.93026 1.21485 1.10750 0.95151 0.99278 0.94598 0.90059 0.94621 0.93065 0.93217 0.90565 0.88609 0.94977 0.95938 0.92440 0.85678 0.91319 0.91459 0.91331 0.90955 0.91337 0.91303 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.64 8.59 -35.23 -0.30 -5.94 16 3 C 0.04 0.57 6.28 37.16 0.23 0.80 16 4 C 0.13 2.09 5.73 -4.04 -0.02 2.07 16 5 N -0.59 -12.12 2.55 -172.92 -0.44 -12.56 16 6 C 0.22 5.06 4.01 -5.20 -0.02 5.04 16 7 C -0.54 -14.55 9.94 -34.44 -0.34 -14.89 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 11 Si 0.87 20.33 27.47 -169.99 -4.67 15.66 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 15 C 0.28 5.79 6.31 -83.61 -0.53 5.26 16 16 C -0.24 -4.50 7.76 -39.24 -0.30 -4.81 16 17 C 0.15 2.68 6.78 -82.65 -0.56 2.12 16 18 C -0.09 -1.27 10.16 36.00 0.37 -0.91 16 19 N -0.54 -10.47 10.18 -5.84 -0.06 -10.53 16 20 C 0.15 2.92 6.78 -82.65 -0.56 2.36 16 21 C -0.10 -1.49 10.17 36.00 0.37 -1.13 16 22 C -0.24 -5.07 8.89 -39.25 -0.35 -5.42 16 23 H 0.04 0.40 8.14 -51.92 -0.42 -0.03 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.20 6.25 -51.93 -0.32 0.87 16 29 H 0.10 1.57 8.07 -51.93 -0.42 1.15 16 30 H 0.03 0.76 5.32 -51.93 -0.28 0.48 16 31 H 0.02 0.50 7.50 -51.93 -0.39 0.11 16 32 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.13 2.13 5.70 -52.49 -0.30 1.83 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 40 H 0.13 2.91 6.28 -52.48 -0.33 2.58 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -31.32 327.70 -6.74 -38.06 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.27 Total: 2.16 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.71 Total: -6.06 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.27 Total: -48.81 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.30 Total: -5.94 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.32 -6.74 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383004948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.397 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds