Wall clock time and date at job start Mon Mar 30 2020 07:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.85685 * 2 1 4 4 H 1.08004 * 120.00546 * 121.24687 * 3 2 1 5 5 C 1.37885 * 119.99721 * 300.96939 * 3 2 1 6 6 N 1.31514 * 120.00035 * 0.02562 * 5 3 2 7 7 Si 1.86803 * 119.99853 * 179.97438 * 5 3 2 8 8 H 1.48500 * 109.47093 * 60.00328 * 7 5 3 9 9 H 1.48495 * 109.47002 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47239 * 300.00048 * 7 5 3 11 11 C 1.54173 * 109.86617 * 120.96695 * 2 1 3 12 12 C 1.54975 * 104.23421 * 121.41309 * 11 2 1 13 13 C 1.54046 * 101.97533 * 19.98871 * 12 11 2 14 14 C 1.53677 * 110.45641 * 83.78981 * 13 12 11 15 15 C 1.55202 * 103.97118 * 144.56942 * 14 13 12 16 16 C 1.55211 * 103.01164 * 323.39948 * 15 14 13 17 17 C 1.51872 * 111.49095 * 202.78137 * 13 12 11 18 18 C 1.53795 * 111.83646 * 117.00631 * 17 13 12 19 19 C 1.54469 * 104.10962 * 202.49046 * 18 17 13 20 20 C 1.53956 * 106.65420 * 22.52495 * 19 18 17 21 21 C 1.53802 * 111.82134 * 0.74087 * 17 13 12 22 22 O 1.43281 * 104.80858 * 324.22319 * 13 12 11 23 23 H 1.08999 * 109.47400 * 59.30373 * 1 2 3 24 24 H 1.09007 * 109.47185 * 179.30171 * 1 2 3 25 25 H 1.08997 * 109.47387 * 299.29597 * 1 2 3 26 26 H 0.97000 * 119.99706 * 179.97438 * 6 5 3 27 27 H 1.08996 * 110.47999 * 240.10626 * 11 2 1 28 28 H 1.08995 * 110.47449 * 2.59763 * 11 2 1 29 29 H 1.09004 * 110.92588 * 138.15962 * 12 11 2 30 30 H 1.08996 * 110.93276 * 261.82004 * 12 11 2 31 31 H 1.08993 * 110.52939 * 263.19350 * 14 13 12 32 32 H 1.09004 * 110.52645 * 25.94858 * 14 13 12 33 33 H 1.09003 * 110.70627 * 205.01849 * 15 14 13 34 34 H 1.08998 * 110.85628 * 81.85416 * 15 14 13 35 35 H 1.09003 * 110.53390 * 277.87317 * 16 15 14 36 36 H 1.09003 * 110.65341 * 155.16175 * 16 15 14 37 37 H 1.08995 * 110.50325 * 321.14352 * 18 17 13 38 38 H 1.08994 * 110.49951 * 83.83959 * 18 17 13 39 39 H 1.08995 * 110.01839 * 263.22637 * 19 18 17 40 40 H 1.08995 * 110.01959 * 141.82045 * 19 18 17 41 41 H 1.08997 * 110.01791 * 240.70254 * 20 19 18 42 42 H 1.08999 * 110.01979 * 119.30634 * 20 19 18 43 43 H 1.08996 * 110.50112 * 276.17642 * 21 17 13 44 44 H 1.08992 * 110.50325 * 38.73092 * 21 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0418 1.4174 0.0000 4 1 2.6816 1.7606 0.7996 5 6 1.6980 2.2745 -1.0239 6 7 0.9230 1.8552 -2.0002 7 14 2.3319 4.0316 -1.0236 8 1 3.8167 4.0222 -1.0469 9 1 1.8220 4.7420 -2.2238 10 1 1.8605 4.7278 0.2005 11 6 2.0539 -0.7461 1.2433 12 6 2.9197 -1.8929 0.6628 13 6 3.2160 -1.3811 -0.7596 14 6 4.4185 -0.4244 -0.7466 15 6 5.1438 -0.7159 -2.0875 16 6 4.9674 -2.2489 -2.2541 17 6 3.5621 -2.5219 -1.7005 18 6 2.5388 -2.6533 -2.8411 19 6 2.6860 -4.1170 -3.3122 20 6 3.3011 -4.8990 -2.1374 21 6 3.5076 -3.8851 -0.9905 22 8 2.0217 -0.6976 -1.1590 23 1 -0.3634 0.5246 -0.8836 24 1 -0.3634 -1.0276 -0.0125 25 1 -0.3634 0.5028 0.8962 26 1 0.6809 2.4583 -2.7203 27 1 2.6621 -0.0826 1.8580 28 1 1.2241 -1.1486 1.8242 29 1 3.8408 -2.0124 1.2334 30 1 2.3587 -2.8268 0.6316 31 1 4.0823 0.6118 -0.7113 32 1 5.0726 -0.6440 0.0973 33 1 6.1998 -0.4545 -2.0192 34 1 4.6683 -0.1815 -2.9100 35 1 5.7179 -2.7854 -1.6735 36 1 5.0256 -2.5306 -3.3055 37 1 1.5298 -2.4708 -2.4716 38 1 2.7800 -1.9654 -3.6514 39 1 3.3453 -4.1655 -4.1788 40 1 1.7083 -4.5283 -3.5631 41 1 4.2586 -5.3267 -2.4344 42 1 2.6216 -5.6895 -1.8188 43 1 4.4451 -4.0825 -0.4707 44 1 2.6709 -3.9190 -0.2929 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383013201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:54 Heat of formation + Delta-G solvation = -59.280257 kcal Electronic energy + Delta-G solvation = -22569.617965 eV Core-core repulsion = 19678.914184 eV Total energy + Delta-G solvation = -2890.703781 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.22415 -37.19451 -34.15293 -32.53965 -31.08309 -29.74845 -28.17577 -28.06712 -25.83088 -25.17922 -22.70620 -21.95831 -20.42099 -19.37382 -18.90646 -17.55239 -16.39251 -15.55705 -15.17148 -14.62643 -14.53000 -14.24801 -13.41881 -13.03710 -13.03029 -12.55057 -12.43045 -11.90846 -11.75190 -11.41547 -11.29687 -11.15132 -10.92454 -10.85841 -10.74869 -10.66143 -10.40543 -10.27249 -10.19965 -10.13072 -9.90316 -9.86751 -9.76182 -9.73154 -9.44200 -9.07371 -9.00657 -8.38285 -7.75909 -5.88502 -4.02737 3.32763 3.38182 3.40525 4.45428 4.79671 4.97709 5.03502 5.24451 5.41985 5.45341 5.59588 5.71946 5.76477 5.85822 5.87417 5.99016 6.01826 6.08650 6.15391 6.19260 6.21826 6.25991 6.33050 6.36593 6.40748 6.54323 6.60449 6.65380 6.71305 6.75890 6.83400 6.88126 6.92852 6.99703 7.02072 7.08054 7.10949 7.19977 7.43897 7.65905 7.84704 8.13448 8.43464 8.75202 9.07837 9.65719 11.12190 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.024058 B = 0.007873 C = 0.007412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.565836 B = 3555.724811 C = 3776.867241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.226 3.774 3 C -0.535 4.535 4 H 0.054 0.946 5 C 0.083 3.917 6 N -0.858 5.858 7 Si 0.879 3.121 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.278 1.278 11 C -0.143 4.143 12 C -0.151 4.151 13 C 0.125 3.875 14 C -0.143 4.143 15 C -0.120 4.120 16 C -0.107 4.107 17 C -0.051 4.051 18 C -0.095 4.095 19 C -0.126 4.126 20 C -0.121 4.121 21 C -0.119 4.119 22 O -0.334 6.334 23 H 0.090 0.910 24 H 0.012 0.988 25 H 0.035 0.965 26 H 0.258 0.742 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.078 -9.884 0.394 11.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.188 3.812 3 C -0.572 4.572 4 H 0.072 0.928 5 C -0.122 4.122 6 N -0.494 5.494 7 Si 0.707 3.293 8 H -0.203 1.203 9 H -0.213 1.213 10 H -0.204 1.204 11 C -0.181 4.181 12 C -0.188 4.188 13 C 0.084 3.916 14 C -0.180 4.180 15 C -0.158 4.158 16 C -0.145 4.145 17 C -0.051 4.051 18 C -0.133 4.133 19 C -0.164 4.164 20 C -0.159 4.159 21 C -0.156 4.156 22 O -0.253 6.253 23 H 0.108 0.892 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.871 -9.831 0.006 10.971 hybrid contribution 0.563 1.050 0.228 1.213 sum 5.434 -8.781 0.233 10.329 Atomic orbital electron populations 1.21793 0.96821 0.97624 1.02584 1.19614 0.91173 0.90104 0.80265 1.21347 1.31804 0.95567 1.08515 0.92801 1.24934 0.94398 0.97539 0.95319 1.69933 1.34257 1.34845 1.10403 0.86893 0.79433 0.85639 0.77346 1.20272 1.21330 1.20367 1.23111 0.98339 0.96602 1.00057 1.23290 0.99440 0.98729 0.97348 1.21590 0.88770 0.90272 0.90972 1.22989 0.96067 1.03804 0.95138 1.22519 0.98871 0.95193 0.99215 1.22328 0.95609 0.96665 0.99866 1.21163 0.95058 0.93467 0.95425 1.22025 1.00386 0.93910 0.96952 1.22243 0.99853 0.96819 0.97476 1.22159 0.99866 0.97850 0.96010 1.22597 1.01579 0.94057 0.97347 1.88898 1.36680 1.65095 1.34644 0.89162 0.96923 0.94605 0.93185 0.92143 0.93270 0.92349 0.91202 0.87691 0.93370 0.93070 0.91553 0.92499 0.92319 0.90138 0.91954 0.92755 0.92554 0.92651 0.92607 0.92217 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.44 37.15 0.31 -2.86 16 2 C 0.23 5.50 0.71 -91.16 -0.06 5.44 16 3 C -0.53 -14.15 5.88 -34.44 -0.20 -14.35 16 4 H 0.05 1.43 7.33 -52.48 -0.38 1.04 16 5 C 0.08 2.25 5.26 -17.82 -0.09 2.15 16 6 N -0.86 -24.07 10.93 55.43 0.61 -23.47 16 7 Si 0.88 20.97 29.54 -169.99 -5.02 15.95 16 8 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 C -0.14 -3.00 6.14 -25.08 -0.15 -3.15 16 12 C -0.15 -2.80 5.17 -25.14 -0.13 -2.93 16 13 C 0.12 2.50 1.05 -90.29 -0.09 2.41 16 14 C -0.14 -2.87 5.77 -25.21 -0.15 -3.02 16 15 C -0.12 -2.15 6.93 -24.39 -0.17 -2.32 16 16 C -0.11 -1.70 5.68 -25.31 -0.14 -1.84 16 17 C -0.05 -0.87 0.73 -154.00 -0.11 -0.99 16 18 C -0.10 -1.69 5.04 -25.55 -0.13 -1.82 16 19 C -0.13 -1.79 6.60 -25.46 -0.17 -1.96 16 20 C -0.12 -1.58 6.69 -25.46 -0.17 -1.75 16 21 C -0.12 -1.74 4.86 -25.55 -0.12 -1.86 16 22 O -0.33 -8.12 8.02 -35.23 -0.28 -8.40 16 23 H 0.09 2.42 6.01 -51.93 -0.31 2.11 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.06 1.27 7.39 -51.93 -0.38 0.89 16 28 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 29 H 0.06 0.99 7.65 -51.93 -0.40 0.59 16 30 H 0.07 1.21 5.34 -51.93 -0.28 0.94 16 31 H 0.10 2.50 5.69 -51.93 -0.30 2.20 16 32 H 0.05 0.89 7.57 -51.93 -0.39 0.50 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 0.82 7.62 -51.93 -0.40 0.42 16 36 H 0.06 0.88 7.72 -51.93 -0.40 0.48 16 37 H 0.08 1.63 7.12 -51.93 -0.37 1.26 16 38 H 0.06 1.18 8.01 -51.93 -0.42 0.76 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.81 7.69 -51.93 -0.40 0.41 16 44 H 0.08 1.16 5.35 -51.93 -0.28 0.89 16 LS Contribution 316.41 15.07 4.77 4.77 Total: -1.00 -27.36 316.41 -9.14 -36.50 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.62 Total: 3.50 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: -1.59 Total: -28.85 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.61 Total: -23.47 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.28 Total: -8.40 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.36 -9.14 -36.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383013201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.779 kcal (2) G-P(sol) polarization free energy of solvation -27.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds