Wall clock time and date at job start Mon Mar 30 2020 06:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47203 * 2 1 4 4 N 1.30251 * 125.61837 * 90.02196 * 3 2 1 5 5 C 1.34481 * 108.70076 * 179.97438 * 4 3 2 6 6 C 1.50695 * 126.16829 * 179.97438 * 5 4 3 7 7 C 1.34335 * 107.66610 * 0.02562 * 5 4 3 8 8 C 1.50694 * 126.43973 * 179.97438 * 7 5 4 9 9 N 1.46900 * 109.47453 * 89.99856 * 8 7 5 10 10 C 1.46898 * 111.00255 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47224 * 185.34653 * 10 9 8 12 12 C 1.50708 * 115.54865 * 65.04919 * 11 10 9 13 13 H 1.07999 * 120.00061 * 265.44265 * 12 11 10 14 14 C 1.37880 * 119.99865 * 85.44900 * 12 11 10 15 15 N 1.31513 * 120.00017 * 353.59055 * 14 12 11 16 16 Si 1.86796 * 119.99505 * 173.59506 * 14 12 11 17 17 H 1.48501 * 109.47225 * 90.00203 * 16 14 12 18 18 H 1.48503 * 109.46789 * 209.99420 * 16 14 12 19 19 H 1.48497 * 109.47461 * 329.99370 * 16 14 12 20 20 C 1.53002 * 117.50139 * 279.38150 * 11 10 9 21 21 C 1.52995 * 117.50251 * 210.71867 * 11 10 9 22 22 O 1.33971 * 125.61619 * 270.30726 * 3 2 1 23 23 H 1.09001 * 109.47313 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47231 * 300.00189 * 1 2 3 25 25 H 1.09003 * 109.47100 * 60.00067 * 1 2 3 26 26 H 1.09002 * 109.46904 * 239.99413 * 2 1 3 27 27 H 1.09003 * 109.47100 * 119.99933 * 2 1 3 28 28 H 1.09005 * 109.47477 * 270.00529 * 6 5 4 29 29 H 1.09001 * 109.47127 * 30.00107 * 6 5 4 30 30 H 1.08994 * 109.47388 * 150.00314 * 6 5 4 31 31 H 1.08997 * 109.47595 * 329.99414 * 8 7 5 32 32 H 1.09007 * 109.46943 * 209.99670 * 8 7 5 33 33 H 1.00902 * 110.99788 * 303.95285 * 9 8 7 34 34 H 1.08998 * 109.47109 * 305.34670 * 10 9 8 35 35 H 1.08996 * 109.47032 * 65.34715 * 10 9 8 36 36 H 0.96994 * 119.99624 * 180.02562 * 15 14 12 37 37 H 1.08997 * 117.49411 * 359.97438 * 20 11 10 38 38 H 1.09001 * 117.50253 * 145.01879 * 20 11 10 39 39 H 1.08998 * 117.50185 * 214.98101 * 21 11 10 40 40 H 1.08999 * 117.49635 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2856 2.1359 1.0588 5 6 2.7149 3.3487 0.6675 6 6 3.1165 4.4847 1.5726 7 6 2.7200 3.3655 -0.6757 8 6 3.1276 4.5196 -1.5549 9 7 4.5658 4.4329 -1.8414 10 6 4.9998 5.5441 -2.6986 11 6 6.4675 5.3481 -3.0836 12 6 6.7592 4.1438 -3.9415 13 1 7.0683 3.2162 -3.4829 14 6 6.6316 4.2264 -5.3119 15 7 6.1357 5.3133 -5.8618 16 14 7.1630 2.7945 -6.3872 17 1 6.0163 1.8718 -6.5851 18 1 7.6187 3.3071 -7.7044 19 1 8.2763 2.0663 -5.7274 20 6 7.5275 5.7595 -2.0598 21 6 7.3100 6.6034 -3.3183 22 8 2.2869 2.1583 -1.0891 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2445 5.1014 1.7906 29 1 3.5193 4.0833 2.5026 30 1 3.8762 5.0910 1.0794 31 1 2.9149 5.4585 -1.0439 32 1 2.5679 4.4797 -2.4895 33 1 5.1033 4.4029 -0.9879 34 1 4.3877 5.5679 -3.6002 35 1 4.8882 6.4844 -2.1588 36 1 6.0456 5.3712 -6.8258 37 1 7.1791 6.1703 -1.1122 38 1 8.4359 5.1595 -2.0070 39 1 8.0755 6.5582 -4.0929 40 1 6.8186 7.5689 -3.1989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383039799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:40 Heat of formation + Delta-G solvation = 34.711589 kcal Electronic energy + Delta-G solvation = -19843.790507 eV Core-core repulsion = 16853.622175 eV Total energy + Delta-G solvation = -2990.168332 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.15806 -37.16488 -35.18985 -34.91478 -33.81614 -31.83102 -30.72693 -28.25085 -26.07572 -25.30608 -23.87955 -22.61009 -21.35533 -21.03223 -20.32018 -19.02131 -16.73235 -16.58883 -15.95351 -15.24060 -14.86038 -14.49849 -14.13644 -14.03625 -13.85808 -13.50021 -13.24126 -13.02150 -12.80899 -12.61505 -12.21775 -11.89109 -11.70671 -11.58290 -11.30751 -11.26156 -10.90761 -10.74754 -10.69523 -10.43775 -10.31943 -10.17262 -9.50625 -8.80995 -8.44402 -8.36770 -8.05276 -7.67419 -5.95177 -3.96287 1.60828 2.74575 2.83904 3.35607 3.41816 3.46005 4.01887 4.48848 4.71286 4.85819 4.92845 4.99206 5.03425 5.21428 5.33300 5.36923 5.44968 5.56119 5.58645 5.59763 5.68590 5.81465 5.83473 5.93044 6.11421 6.13343 6.28329 6.31720 6.45772 6.49057 6.58531 6.72690 6.82538 7.11453 7.46543 7.51824 7.81725 7.89828 7.98344 8.03411 8.55395 9.02841 9.67015 11.14795 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.018828 B = 0.005105 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.756830 B = 5483.954269 C = 6528.897127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.024 4.024 3 C 0.182 3.818 4 N -0.482 5.482 5 C -0.023 4.023 6 C -0.068 4.068 7 C -0.020 4.020 8 C 0.140 3.860 9 N -0.664 5.664 10 C 0.108 3.892 11 C 0.051 3.949 12 C -0.470 4.470 13 H 0.059 0.941 14 C 0.068 3.932 15 N -0.886 5.886 16 Si 0.888 3.112 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.215 4.215 21 C -0.156 4.156 22 O -0.188 6.188 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.334 0.666 34 H 0.079 0.921 35 H -0.001 1.001 36 H 0.257 0.743 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.508 -4.044 11.414 15.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.062 4.062 3 C -0.025 4.025 4 N -0.212 5.212 5 C -0.143 4.143 6 C -0.125 4.125 7 C -0.074 4.074 8 C 0.011 3.989 9 N -0.295 5.295 10 C -0.020 4.020 11 C 0.051 3.949 12 C -0.507 4.507 13 H 0.077 0.923 14 C -0.134 4.134 15 N -0.524 5.524 16 Si 0.716 3.284 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.253 4.253 21 C -0.194 4.194 22 O -0.074 6.074 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.111 0.889 27 H 0.121 0.879 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.151 0.849 34 H 0.098 0.902 35 H 0.017 0.983 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.716 -4.617 11.246 15.563 hybrid contribution 0.368 0.274 -0.775 0.900 sum -9.349 -4.343 10.472 14.694 Atomic orbital electron populations 1.21775 0.93388 1.02686 1.02844 1.19999 0.96578 0.84611 1.05057 1.26100 1.00726 0.96723 0.78940 1.70259 1.17017 1.03485 1.30432 1.21443 1.05775 0.94931 0.92165 1.20062 1.01224 0.93218 0.97988 1.23268 1.03286 0.86388 0.94409 1.20302 0.92389 0.88951 0.97301 1.60281 0.99902 1.48677 1.20638 1.21601 0.98566 0.86947 0.94932 1.18794 0.86317 0.94755 0.95075 1.20301 1.44845 0.95629 0.89975 0.92323 1.24928 0.94957 0.95592 0.97940 1.70000 1.44583 1.27238 1.10593 0.86666 0.78998 0.82885 0.79853 1.20789 1.21424 1.19995 1.23002 1.03460 1.06309 0.92516 1.22519 1.04632 0.94570 0.97719 1.84425 1.63250 1.22494 1.37241 0.91092 0.91950 0.92150 0.88879 0.87910 0.91111 0.90707 0.90943 0.92665 0.89296 0.84876 0.90223 0.98302 0.93314 0.92160 0.90478 0.90001 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.90 16 2 C -0.02 -0.25 6.56 -27.88 -0.18 -0.43 16 3 C 0.18 2.74 7.60 -12.95 -0.10 2.64 16 4 N -0.48 -7.75 11.29 -7.36 -0.08 -7.83 16 5 C -0.02 -0.35 7.11 -82.81 -0.59 -0.94 16 6 C -0.07 -0.82 10.04 36.00 0.36 -0.45 16 7 C -0.02 -0.33 6.90 -35.69 -0.25 -0.57 16 8 C 0.14 2.30 5.83 -4.98 -0.03 2.28 16 9 N -0.66 -12.97 6.36 -115.06 -0.73 -13.70 16 10 C 0.11 2.33 5.51 -3.83 -0.02 2.31 16 11 C 0.05 1.24 1.55 -155.66 -0.24 1.00 16 12 C -0.47 -12.84 8.74 -34.44 -0.30 -13.14 16 13 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 14 C 0.07 1.86 5.39 -17.82 -0.10 1.77 16 15 N -0.89 -25.07 12.92 55.43 0.72 -24.35 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.22 -4.62 9.96 -26.69 -0.27 -4.88 16 21 C -0.16 -3.62 9.41 -26.70 -0.25 -3.87 16 22 O -0.19 -3.27 10.78 5.35 0.06 -3.21 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.82 7.79 -51.93 -0.40 0.42 16 31 H 0.06 0.78 7.80 -51.93 -0.40 0.37 16 32 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 33 H 0.33 6.17 8.78 -39.29 -0.34 5.83 16 34 H 0.08 1.92 8.13 -51.93 -0.42 1.50 16 35 H 0.00 -0.02 8.09 -51.93 -0.42 -0.44 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 39 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 341.13 15.07 5.14 5.14 Total: -1.00 -30.64 341.13 -8.13 -38.77 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.62 Total: 3.82 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.59 Total: -15.21 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.10 Total: -45.89 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: 0.06 Total: -3.21 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.64 -8.13 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383039799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.477 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds