Wall clock time and date at job start Mon Mar 30 2020 07:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47121 * 2 1 4 4 C 1.50697 * 109.47126 * 119.99670 * 2 1 3 5 5 H 1.08005 * 120.00021 * 119.99724 * 4 2 1 6 6 C 1.37877 * 120.00330 * 300.00195 * 4 2 1 7 7 N 1.31518 * 120.00076 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99772 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47242 * 89.99907 * 8 6 4 10 10 H 1.48501 * 109.46990 * 209.99864 * 8 6 4 11 11 H 1.48499 * 109.47048 * 329.99642 * 8 6 4 12 12 C 1.52996 * 109.47472 * 240.00063 * 2 1 3 13 13 C 1.50703 * 109.47399 * 64.99647 * 12 2 1 14 14 N 1.31134 * 126.54839 * 89.97350 * 13 12 2 15 15 C 1.34490 * 105.61260 * 180.02562 * 14 13 12 16 16 C 1.50707 * 126.28527 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.47006 * 269.97560 * 16 15 14 18 18 C 1.54264 * 110.03017 * 292.16650 * 17 16 15 19 19 C 1.54891 * 104.19776 * 217.10805 * 18 17 16 20 20 C 1.54893 * 102.74501 * 37.93892 * 19 18 17 21 21 C 1.53871 * 110.03058 * 174.99854 * 17 16 15 22 22 N 1.29938 * 107.42847 * 359.97438 * 15 14 13 23 23 O 1.21303 * 110.25257 * 359.97438 * 22 15 14 24 24 H 1.08993 * 109.46857 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47017 * 300.00134 * 1 2 3 26 26 H 1.09008 * 109.46676 * 59.99972 * 1 2 3 27 27 H 0.97001 * 119.99610 * 180.02562 * 7 6 4 28 28 H 1.09008 * 109.47040 * 305.00260 * 12 2 1 29 29 H 1.09001 * 109.47598 * 185.00375 * 12 2 1 30 30 H 1.09000 * 109.47044 * 29.97342 * 16 15 14 31 31 H 1.08995 * 109.46918 * 149.97622 * 16 15 14 32 32 H 1.09002 * 110.01567 * 53.60622 * 17 16 15 33 33 H 1.09005 * 110.48503 * 335.78154 * 18 17 16 34 34 H 1.08998 * 110.49054 * 98.42893 * 18 17 16 35 35 H 1.08997 * 110.75238 * 279.62847 * 19 18 17 36 36 H 1.08998 * 110.91617 * 156.32877 * 19 18 17 37 37 H 1.09007 * 110.48512 * 203.38120 * 20 19 18 38 38 H 1.09004 * 110.59733 * 80.79813 * 20 19 18 39 39 H 1.08994 * 110.03478 * 238.56665 * 21 17 16 40 40 H 1.09002 * 110.03087 * 359.95247 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1372 -0.8595 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9771 1.9954 3.9070 11 1 0.8492 2.1774 1.4923 12 6 2.0401 -0.7212 -1.2492 13 6 1.6414 0.0570 -2.4766 14 7 2.3347 1.0054 -3.0593 15 6 1.5916 1.4058 -4.1064 16 6 1.9535 2.4821 -5.0972 17 6 1.4308 3.8309 -4.5988 18 6 -0.1115 3.8444 -4.6311 19 6 -0.4698 5.2885 -5.0615 20 6 0.6265 5.6158 -6.1057 21 6 1.9000 4.9571 -5.5363 22 7 0.5049 0.6935 -4.1074 23 8 0.5141 -0.0880 -3.1797 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 1.9026 -0.5283 4.4376 28 1 1.6054 -1.7198 -1.2951 29 1 3.1264 -0.7995 -1.2055 30 1 3.0374 2.5290 -5.2029 31 1 1.5039 2.2526 -6.0632 32 1 1.7854 4.0169 -3.5850 33 1 -0.4841 3.1254 -5.3607 34 1 -0.5157 3.6299 -3.6418 35 1 -0.4110 5.9703 -4.2131 36 1 -1.4596 5.3247 -5.5164 37 1 0.7609 6.6940 -6.1925 38 1 0.3744 5.1845 -7.0745 39 1 2.4816 5.6902 -4.9775 40 1 2.5009 4.5428 -6.3460 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383179201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:04 Heat of formation + Delta-G solvation = 18.813729 kcal Electronic energy + Delta-G solvation = -20082.415256 eV Core-core repulsion = 17091.557541 eV Total energy + Delta-G solvation = -2990.857715 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.53922 -39.50593 -37.64669 -36.76010 -34.53418 -33.25985 -31.75172 -29.62655 -28.78631 -27.19717 -27.01469 -24.59397 -22.86812 -21.59479 -21.39860 -20.62202 -19.18518 -18.79708 -18.19459 -16.99441 -16.82733 -16.04211 -15.79925 -15.47685 -14.97106 -14.84741 -14.64612 -14.25010 -14.21849 -13.61051 -13.59045 -13.21645 -13.06874 -12.78114 -12.40215 -12.31056 -12.08152 -12.01843 -12.00184 -11.92345 -11.85912 -11.69172 -11.60832 -11.40153 -11.31852 -11.14631 -10.77689 -10.66814 -8.30423 -6.34029 0.15561 1.24434 1.28968 1.35641 1.43673 1.87769 2.30758 2.70318 3.05730 3.08818 3.60779 3.65418 3.73176 4.03915 4.15188 4.28786 4.33018 4.36731 4.45594 4.50744 4.55062 4.60271 4.70386 4.78643 4.79479 4.83960 4.87157 4.90976 4.95445 5.02001 5.06014 5.10356 5.21992 5.26187 5.29033 5.41352 5.46274 5.55764 5.61827 6.25742 6.72886 7.18515 7.31538 8.85449 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.024402 B = 0.004748 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.148821 B = 5895.374114 C = 6475.046706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.017 3.983 3 H 0.021 0.979 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.941 5.941 8 Si 0.939 3.061 9 H -0.266 1.266 10 H -0.299 1.299 11 H -0.261 1.261 12 C -0.008 4.008 13 C 0.207 3.793 14 N -0.511 5.511 15 C 0.170 3.830 16 C -0.018 4.018 17 C -0.087 4.087 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.119 4.119 21 C -0.113 4.113 22 N -0.405 5.405 23 O 0.061 5.939 24 H 0.070 0.930 25 H 0.030 0.970 26 H 0.040 0.960 27 H 0.267 0.733 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.110 10.633 -20.140 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.003 4.003 3 H 0.039 0.961 4 C -0.551 4.551 5 H 0.074 0.926 6 C -0.175 4.175 7 N -0.581 5.581 8 Si 0.767 3.233 9 H -0.192 1.192 10 H -0.226 1.226 11 H -0.185 1.185 12 C -0.047 4.047 13 C -0.012 4.012 14 N -0.246 5.246 15 C -0.103 4.103 16 C -0.057 4.057 17 C -0.107 4.107 18 C -0.159 4.159 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.151 4.151 22 N -0.117 5.117 23 O 0.008 5.992 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.392 10.964 -20.613 23.592 hybrid contribution -0.434 0.189 1.128 1.224 sum -3.826 11.154 -19.485 22.775 Atomic orbital electron populations 1.22172 0.97640 1.02043 0.98721 1.19063 0.93046 0.95991 0.92199 0.96115 1.21143 1.31328 1.12913 0.89699 0.92613 1.25655 0.96991 0.99179 0.95686 1.70000 1.47369 1.42181 0.98590 0.86000 0.79641 0.80766 0.76869 1.19248 1.22638 1.18540 1.20381 1.03307 0.97708 0.83275 1.29326 0.81948 0.93744 0.96195 1.71948 1.30986 1.12860 1.08766 1.26447 0.87462 0.99788 0.96610 1.20349 1.03509 0.87959 0.93871 1.21755 0.95623 0.93603 0.99737 1.22430 0.94929 0.98415 1.00116 1.22496 0.99524 0.94970 0.99141 1.22358 0.93871 1.01040 0.98398 1.22170 0.98237 0.96140 0.98524 1.74544 1.22796 1.06644 1.07757 1.85271 1.38579 1.45744 1.29632 0.91134 0.95126 0.94082 0.92427 0.86682 0.87176 0.87456 0.87531 0.92651 0.91376 0.94706 0.91903 0.90837 0.90451 0.90660 0.91123 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.06 8.49 71.98 0.61 -5.45 16 2 C 0.02 0.75 1.88 -11.54 -0.02 0.72 16 3 H 0.02 0.97 7.20 -2.38 -0.02 0.96 16 4 C -0.51 -27.25 9.14 25.60 0.23 -27.01 16 5 H 0.06 3.16 7.99 -2.91 -0.02 3.14 16 6 C 0.02 1.29 5.45 84.65 0.46 1.75 16 7 N -0.94 -56.76 13.96 21.45 0.30 -56.46 16 8 Si 0.94 44.60 24.37 68.60 1.67 46.27 16 9 H -0.27 -12.06 6.87 99.48 0.68 -11.38 16 10 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 11 H -0.26 -11.96 6.53 99.48 0.65 -11.31 16 12 C -0.01 -0.28 5.26 29.85 0.16 -0.12 16 13 C 0.21 7.25 6.92 88.38 0.61 7.86 16 14 N -0.51 -18.02 11.55 -303.21 -3.50 -21.53 16 15 C 0.17 5.25 7.04 138.47 0.97 6.22 16 16 C -0.02 -0.40 4.97 29.85 0.15 -0.25 16 17 C -0.09 -1.85 2.92 -10.07 -0.03 -1.88 16 18 C -0.12 -2.69 5.93 31.67 0.19 -2.50 16 19 C -0.12 -2.11 6.91 31.89 0.22 -1.89 16 20 C -0.12 -1.59 6.83 31.67 0.22 -1.38 16 21 C -0.11 -1.68 6.46 31.32 0.20 -1.48 16 22 N -0.41 -13.35 12.16 -60.33 -0.73 -14.09 16 23 O 0.06 2.10 10.76 74.85 0.81 2.90 16 24 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 25 H 0.03 1.31 3.27 -2.39 -0.01 1.30 16 26 H 0.04 1.52 6.94 -2.38 -0.02 1.50 16 27 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 28 H 0.11 3.63 8.14 -2.38 -0.02 3.61 16 29 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 30 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.11 1.94 8.00 -2.39 -0.02 1.92 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.52 7.76 -2.38 -0.02 1.51 16 34 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 0.99 7.67 -2.39 -0.02 0.98 16 Total: -1.00 -62.89 318.18 3.45 -59.44 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.93 Total: 8.87 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 3.97 Total: -25.40 kcal Atomic # 7 Polarization: -88.14 SS G_CDS: -3.94 Total: -92.08 kcal Atomic # 8 Polarization: 2.10 SS G_CDS: 0.81 Total: 2.90 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.67 Total: 46.27 kcal Total: -62.89 3.45 -59.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383179201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.253 kcal (2) G-P(sol) polarization free energy of solvation -62.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds