Wall clock time and date at job start Mon Mar 30 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35997 * 117.00033 * 2 1 4 4 C 1.38705 * 119.95453 * 359.97438 * 3 2 1 5 5 C 1.38622 * 119.94566 * 180.02562 * 4 3 2 6 6 N 1.39999 * 120.06591 * 179.97438 * 5 4 3 7 7 C 1.46892 * 111.00115 * 297.06223 * 6 5 4 8 8 C 1.46901 * 110.99854 * 61.01881 * 6 5 4 9 9 H 1.08995 * 109.47105 * 295.60154 * 8 6 5 10 10 C 1.53003 * 109.46778 * 175.60089 * 8 6 5 11 11 C 1.50703 * 109.47439 * 55.59925 * 8 6 5 12 12 H 1.08000 * 119.99716 * 0.02562 * 11 8 6 13 13 C 1.37871 * 119.99959 * 179.97438 * 11 8 6 14 14 N 1.31506 * 120.00218 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 119.99750 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.47146 * 90.00453 * 15 13 11 17 17 H 1.48502 * 109.47222 * 210.00293 * 15 13 11 18 18 H 1.48500 * 109.47455 * 330.00161 * 15 13 11 19 19 C 1.39478 * 119.86437 * 359.97438 * 5 4 3 20 20 N 1.40278 * 120.04250 * 180.02562 * 19 5 4 21 21 C 1.38574 * 119.91519 * 359.97438 * 19 5 4 22 22 C 1.38312 * 120.05630 * 0.02562 * 21 19 5 23 23 C 1.50692 * 119.93585 * 179.69472 * 22 21 19 24 24 H 1.09001 * 109.46831 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47308 * 299.99698 * 1 2 3 26 26 H 1.08999 * 109.47400 * 60.00365 * 1 2 3 27 27 H 1.07997 * 120.02851 * 0.02562 * 4 3 2 28 28 H 1.08998 * 109.47418 * 60.00072 * 7 6 5 29 29 H 1.08998 * 109.47235 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.47405 * 300.00253 * 7 6 5 31 31 H 1.08996 * 109.47132 * 305.97683 * 10 8 6 32 32 H 1.08995 * 109.47074 * 65.98092 * 10 8 6 33 33 H 1.08999 * 109.46799 * 185.97759 * 10 8 6 34 34 H 0.97004 * 120.00450 * 179.97438 * 14 13 11 35 35 H 0.97000 * 120.00351 * 179.97438 * 20 19 5 36 36 H 0.97001 * 120.00169 * 359.97359 * 20 19 5 37 37 H 1.08007 * 119.97386 * 179.97438 * 21 19 5 38 38 H 1.09005 * 109.47218 * 90.00139 * 23 22 21 39 39 H 1.09000 * 109.47618 * 209.99848 * 23 22 21 40 40 H 1.09002 * 109.47547 * 330.00477 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2901 2.3744 -0.0005 5 6 1.9196 3.6095 -0.0011 6 7 1.1586 4.7846 -0.0022 7 6 0.3493 4.8866 -1.2238 8 6 0.3142 4.8660 1.1971 9 1 -0.4143 4.0555 1.1843 10 6 -0.4177 6.2095 1.2152 11 6 1.1762 4.7470 2.4276 12 1 2.2446 4.6237 2.3285 13 6 0.6011 4.7967 3.6796 14 7 -0.6997 4.9474 3.8002 15 14 1.6698 4.6499 5.2047 16 1 2.1158 6.0014 5.6286 17 1 0.8871 4.0212 6.2990 18 1 2.8560 3.8104 4.8991 19 6 3.3126 3.6789 -0.0005 20 7 3.9536 4.9267 -0.0005 21 6 4.0627 2.5137 0.0011 22 6 3.4310 1.2833 0.0016 23 6 4.2494 0.0179 -0.0036 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2116 2.3176 -0.0005 28 1 -0.3258 4.0330 -1.2847 29 1 -0.2315 5.8086 -1.1989 30 1 1.0050 4.8940 -2.0945 31 1 0.3062 7.0189 1.1210 32 1 -1.1202 6.2517 0.3829 33 1 -0.9605 6.3149 2.1545 34 1 -1.1044 4.9820 4.6811 35 1 4.9224 4.9744 0.0002 36 1 3.4279 5.7420 -0.0013 37 1 5.1415 2.5664 0.0011 38 1 4.4507 -0.2889 1.0228 39 1 3.6974 -0.7697 -0.5165 40 1 5.1920 0.1969 -0.5208 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383422285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:17 Heat of formation + Delta-G solvation = -3.223315 kcal Electronic energy + Delta-G solvation = -21104.587346 eV Core-core repulsion = 18112.774033 eV Total energy + Delta-G solvation = -2991.813313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.84981 -37.87744 -36.06948 -33.51609 -32.85637 -30.96125 -28.81867 -28.01522 -26.96424 -26.55685 -24.75769 -23.67492 -21.78489 -20.51846 -19.41746 -17.20196 -16.78224 -16.07238 -15.79231 -15.27554 -15.06796 -14.57309 -14.03263 -13.81838 -13.52299 -13.20058 -13.08078 -12.85721 -12.40360 -12.07532 -11.94005 -11.71384 -11.58907 -11.28483 -11.04081 -11.01098 -10.80432 -10.65664 -10.53578 -10.27325 -10.19620 -9.87638 -9.07229 -8.92989 -8.42563 -7.93448 -7.42638 -6.41086 -5.99705 -4.02623 1.97040 2.34146 3.31900 3.38239 3.44202 3.86036 4.43202 4.43715 4.65751 4.92071 5.33353 5.37326 5.46419 5.50943 5.57205 5.79890 5.82839 5.93736 6.01363 6.02708 6.11544 6.15441 6.23052 6.39884 6.48492 6.69913 6.77122 6.87307 6.97724 7.05312 7.16188 7.32832 7.44127 7.72819 7.84956 7.94590 8.10813 8.27360 8.42411 8.58967 8.62789 9.04584 9.61944 11.06934 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.008003 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.494841 B = 3497.816760 C = 3693.605481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.324 6.324 3 C 0.069 3.931 4 C -0.175 4.175 5 C 0.099 3.901 6 N -0.504 5.504 7 C 0.030 3.970 8 C 0.217 3.783 9 H 0.001 0.999 10 C -0.135 4.135 11 C -0.493 4.493 12 H 0.064 0.936 13 C 0.059 3.941 14 N -0.896 5.896 15 Si 0.893 3.107 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.209 3.791 20 N -0.870 5.870 21 C -0.172 4.172 22 C -0.090 4.090 23 C -0.097 4.097 24 H 0.090 0.910 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.120 0.880 28 H 0.015 0.985 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.033 0.967 32 H 0.008 0.992 33 H 0.089 0.911 34 H 0.259 0.741 35 H 0.385 0.615 36 H 0.407 0.593 37 H 0.119 0.881 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.086 -5.016 -8.874 11.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.239 6.239 3 C 0.023 3.977 4 C -0.196 4.196 5 C 0.001 3.999 6 N -0.226 5.226 7 C -0.117 4.117 8 C 0.113 3.887 9 H 0.018 0.982 10 C -0.193 4.193 11 C -0.531 4.531 12 H 0.083 0.917 13 C -0.142 4.142 14 N -0.536 5.536 15 Si 0.721 3.279 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.199 1.199 19 C 0.103 3.897 20 N -0.411 5.411 21 C -0.195 4.195 22 C -0.091 4.091 23 C -0.153 4.153 24 H 0.108 0.892 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.137 0.863 28 H 0.034 0.966 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.211 0.789 36 H 0.237 0.763 37 H 0.137 0.863 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.288 -4.805 -8.716 11.271 hybrid contribution -0.303 -0.184 1.062 1.119 sum 4.986 -4.989 -7.654 10.408 Atomic orbital electron populations 1.22889 0.79546 1.02687 1.01252 1.85946 1.20308 1.27406 1.90199 1.18352 0.91395 0.83608 1.04362 1.21416 0.99676 0.92473 1.06059 1.17912 0.90858 0.88785 1.02339 1.59845 1.26574 1.32665 1.03544 1.22352 0.96338 1.00427 0.92595 1.19350 0.90342 0.93672 0.85330 0.98187 1.21867 0.98390 0.97966 1.01080 1.21115 0.94199 1.48291 0.89525 0.91750 1.24873 0.94933 0.95455 0.98917 1.69873 1.09432 1.50950 1.23319 0.86568 0.80546 0.78134 0.82663 1.20781 1.21390 1.19876 1.17489 0.90328 0.86040 0.95809 1.42327 1.07738 1.05438 1.85551 1.20023 0.98403 0.90080 1.11027 1.18730 0.90267 0.94985 1.05114 1.20505 0.98286 0.94938 1.01614 0.89179 0.92712 0.93531 0.86262 0.96601 0.91327 0.92984 0.94769 0.97307 0.89223 0.93088 0.78852 0.76323 0.86332 0.92022 0.91745 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 16 2 O -0.32 -5.71 9.52 -19.73 -0.19 -5.90 16 3 C 0.07 1.32 6.66 -39.26 -0.26 1.06 16 4 C -0.17 -3.58 7.60 -39.27 -0.30 -3.88 16 5 C 0.10 2.07 3.50 -83.52 -0.29 1.78 16 6 N -0.50 -10.65 3.77 -172.49 -0.65 -11.30 16 7 C 0.03 0.55 9.10 60.06 0.55 1.10 16 8 C 0.22 5.39 1.78 -68.86 -0.12 5.26 16 9 H 0.00 0.02 7.34 -51.93 -0.38 -0.37 16 10 C -0.13 -3.21 8.64 37.16 0.32 -2.89 16 11 C -0.49 -13.43 8.04 -34.44 -0.28 -13.70 16 12 H 0.06 1.80 6.87 -52.49 -0.36 1.44 16 13 C 0.06 1.63 5.29 -17.83 -0.09 1.54 16 14 N -0.90 -25.47 11.29 55.43 0.63 -24.85 16 15 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.21 3.96 6.33 -83.41 -0.53 3.43 16 20 N -0.87 -14.26 9.10 32.58 0.30 -13.96 16 21 C -0.17 -2.98 9.54 -39.43 -0.38 -3.36 16 22 C -0.09 -1.59 5.89 -104.45 -0.62 -2.21 16 23 C -0.10 -1.38 9.79 36.00 0.35 -1.03 16 24 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.05 0.87 7.66 -51.93 -0.40 0.47 16 26 H 0.05 0.63 7.66 -51.93 -0.40 0.24 16 27 H 0.12 2.45 5.29 -52.49 -0.28 2.17 16 28 H 0.02 0.28 7.29 -51.93 -0.38 -0.10 16 29 H 0.07 1.20 6.25 -51.93 -0.32 0.87 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.01 0.17 6.66 -51.93 -0.35 -0.17 16 33 H 0.09 2.37 5.93 -51.93 -0.31 2.06 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.39 5.08 8.85 -40.82 -0.36 4.72 16 36 H 0.41 6.98 8.11 -40.82 -0.33 6.65 16 37 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.90 7.51 -51.93 -0.39 0.51 16 40 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 LS Contribution 318.93 15.07 4.81 4.81 Total: -1.00 -29.84 318.93 -6.71 -36.55 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.92 Total: 9.22 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -0.65 Total: -11.44 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.27 Total: -50.11 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.19 Total: -5.90 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.84 -6.71 -36.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383422285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.328 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds