Wall clock time and date at job start Mon Mar 30 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35745 * 117.00024 * 2 1 4 4 C 1.39285 * 120.84509 * 0.02562 * 3 2 1 5 5 C 1.37952 * 119.09360 * 179.97438 * 4 3 2 6 6 N 1.31979 * 120.81991 * 359.74871 * 5 4 3 7 7 C 1.31940 * 121.86495 * 0.52570 * 6 5 4 8 8 C 1.37988 * 120.82222 * 359.46638 * 7 6 5 9 9 C 1.50703 * 120.45597 * 180.23615 * 8 7 6 10 10 N 1.46899 * 109.47324 * 260.00428 * 9 8 7 11 11 C 1.46893 * 111.00011 * 169.99806 * 10 9 8 12 12 C 1.50703 * 109.47308 * 284.59239 * 11 10 9 13 13 H 1.07993 * 120.00069 * 359.43246 * 12 11 10 14 14 C 1.37874 * 120.00045 * 179.42493 * 12 11 10 15 15 N 1.31522 * 120.00349 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00076 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47051 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47195 * 120.00309 * 16 14 12 19 19 H 1.48504 * 109.47562 * 240.00459 * 16 14 12 20 20 C 1.46905 * 110.99985 * 293.95353 * 10 9 8 21 21 C 1.53006 * 109.46760 * 172.81050 * 20 10 9 22 22 C 1.52994 * 109.47112 * 292.81041 * 20 10 9 23 23 H 1.08997 * 109.47481 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47688 * 300.00269 * 1 2 3 25 25 H 1.09011 * 109.47161 * 60.00043 * 1 2 3 26 26 H 1.08004 * 120.45674 * 359.95669 * 4 3 2 27 27 H 1.07998 * 119.58800 * 179.97438 * 5 4 3 28 28 H 1.07997 * 119.58720 * 179.75723 * 7 6 5 29 29 H 1.09002 * 109.46808 * 20.00090 * 9 8 7 30 30 H 1.08999 * 109.47171 * 140.00685 * 9 8 7 31 31 H 1.08998 * 109.47465 * 44.59871 * 11 10 9 32 32 H 1.09009 * 109.47073 * 164.59751 * 11 10 9 33 33 H 0.96994 * 119.99878 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.47149 * 52.81296 * 20 10 9 35 35 H 1.08997 * 109.47035 * 66.23592 * 21 20 10 36 36 H 1.09005 * 109.46423 * 186.23200 * 21 20 10 37 37 H 1.08999 * 109.47454 * 306.22968 * 21 20 10 38 38 H 1.09004 * 109.47088 * 60.00291 * 22 20 10 39 39 H 1.08998 * 109.47091 * 179.97438 * 22 20 10 40 40 H 1.09000 * 109.47321 * 300.00149 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0060 7 6 4.0230 2.5511 0.0004 8 6 3.4345 1.3030 0.0000 9 6 4.2838 0.0581 -0.0011 10 7 4.3605 -0.4812 -1.3654 11 6 5.3640 -1.5503 -1.4532 12 6 6.7443 -0.9453 -1.4488 13 1 6.8638 0.1267 -1.3961 14 6 7.8545 -1.7604 -1.5117 15 7 7.7090 -3.0660 -1.5762 16 14 9.5653 -1.0105 -1.5055 17 1 9.4572 0.4684 -1.4267 18 1 10.3224 -1.5143 -0.3315 19 1 10.2766 -1.3895 -2.7529 20 6 3.0459 -0.9546 -1.8190 21 6 3.1253 -1.3408 -3.2974 22 6 2.6309 -2.1748 -0.9947 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8901 26 1 0.2243 2.3567 0.0003 27 1 1.4006 4.5174 0.0011 28 1 5.0998 2.6330 0.0008 29 1 5.2864 0.3020 0.3500 30 1 3.8385 -0.6861 0.6592 31 1 5.2579 -2.2194 -0.5993 32 1 5.2166 -2.1121 -2.3756 33 1 8.4901 -3.6393 -1.6208 34 1 2.3096 -0.1613 -1.6898 35 1 3.7776 -2.2065 -3.4122 36 1 2.1281 -1.5863 -3.6628 37 1 3.5265 -0.5049 -3.8703 38 1 2.5743 -1.8996 0.0585 39 1 1.6553 -2.5258 -1.3310 40 1 3.3672 -2.9681 -1.1239 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383456982.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:07 Heat of formation + Delta-G solvation = 8.348189 kcal Electronic energy + Delta-G solvation = -21011.495274 eV Core-core repulsion = 18020.183740 eV Total energy + Delta-G solvation = -2991.311534 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.71511 -38.11936 -37.45855 -32.73244 -32.61316 -31.06099 -30.18332 -27.62873 -27.20096 -26.31996 -24.82692 -22.81351 -22.24378 -21.67921 -18.69881 -18.03157 -16.95735 -16.67745 -15.93795 -15.19057 -14.78850 -14.65267 -14.38293 -14.21712 -13.78715 -13.63590 -13.38940 -12.99579 -12.47053 -12.16294 -12.00997 -11.83958 -11.58714 -11.40467 -11.26088 -10.98709 -10.75346 -10.63486 -10.41837 -10.32166 -10.11849 -9.49666 -9.30082 -9.17447 -8.96643 -8.49874 -8.34399 -7.10245 -5.96816 -3.97445 1.29670 1.52942 3.19579 3.34503 3.42236 3.47314 3.98834 4.48031 4.61417 4.75919 4.93640 5.02402 5.05613 5.13276 5.30040 5.37424 5.38483 5.58552 5.67552 5.76242 5.86543 5.91545 6.06002 6.15985 6.19421 6.37638 6.41312 6.53669 6.54274 6.62280 6.82671 6.92342 6.98451 7.28386 7.37038 7.45812 7.89869 8.20679 8.21307 8.29436 8.64631 9.11345 9.66634 11.13537 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.021238 B = 0.006468 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.048750 B = 4327.760069 C = 5262.119888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.292 6.292 3 C 0.165 3.835 4 C -0.265 4.265 5 C 0.120 3.880 6 N -0.510 5.510 7 C 0.144 3.856 8 C -0.139 4.139 9 C 0.107 3.893 10 N -0.523 5.523 11 C 0.190 3.810 12 C -0.502 4.502 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.285 1.285 20 C 0.073 3.927 21 C -0.141 4.141 22 C -0.171 4.171 23 H 0.099 0.901 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.132 0.868 27 H 0.151 0.849 28 H 0.164 0.836 29 H 0.091 0.909 30 H 0.039 0.961 31 H -0.006 1.006 32 H 0.036 0.964 33 H 0.259 0.741 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.040 0.960 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.416 6.952 3.337 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.203 6.203 3 C 0.111 3.889 4 C -0.287 4.287 5 C -0.037 4.037 6 N -0.222 5.222 7 C -0.011 4.011 8 C -0.143 4.143 9 C -0.021 4.021 10 N -0.247 5.247 11 C 0.065 3.935 12 C -0.541 4.541 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.540 5.540 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.036 4.036 21 C -0.199 4.199 22 C -0.229 4.229 23 H 0.118 0.882 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.150 0.850 27 H 0.168 0.832 28 H 0.181 0.819 29 H 0.109 0.891 30 H 0.057 0.943 31 H 0.012 0.988 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.668 7.733 3.010 16.853 hybrid contribution -0.071 -1.153 0.470 1.248 sum -14.739 6.580 3.481 16.512 Atomic orbital electron populations 1.23068 0.79101 1.03999 1.01157 1.86413 1.20802 1.25763 1.87343 1.19206 0.92213 0.84582 0.92908 1.22107 1.00985 0.93382 1.12176 1.22423 0.90527 0.96610 0.94168 1.67725 1.06922 1.32407 1.15149 1.22633 1.00435 0.86011 0.92070 1.20592 0.90941 0.98385 1.04351 1.20776 0.98471 0.91095 0.91794 1.62434 1.05411 1.36686 1.20218 1.19789 0.89025 0.88118 0.96553 1.21260 0.90133 0.93597 1.49135 0.91874 1.24979 0.99232 0.94776 0.95678 1.69970 1.29785 1.02907 1.51386 0.86501 0.84376 0.79489 0.77418 1.19604 1.21231 1.21152 1.21814 0.92234 0.95442 0.94087 1.21856 0.99890 1.02054 0.96096 1.22360 1.00132 0.99577 1.00871 0.88224 0.92822 0.92627 0.84980 0.83202 0.81924 0.89087 0.94347 0.98836 0.94619 0.93121 0.90572 0.92175 0.94002 0.92462 0.92453 0.94091 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.84 101.05 0.99 1.19 16 2 O -0.29 -3.99 4.83 -18.94 -0.09 -4.08 16 3 C 0.16 2.43 5.46 -38.82 -0.21 2.21 16 4 C -0.27 -3.28 9.11 -39.30 -0.36 -3.64 16 5 C 0.12 1.55 11.17 -17.59 -0.20 1.35 16 6 N -0.51 -7.96 10.36 -13.33 -0.14 -8.09 16 7 C 0.14 2.35 10.82 -17.60 -0.19 2.16 16 8 C -0.14 -2.35 5.19 -104.34 -0.54 -2.89 16 9 C 0.11 2.08 4.70 -4.97 -0.02 2.05 16 10 N -0.52 -11.22 4.39 -229.52 -1.01 -12.22 16 11 C 0.19 4.85 3.46 -4.98 -0.02 4.84 16 12 C -0.50 -13.96 8.55 -34.44 -0.29 -14.26 16 13 H 0.06 1.74 7.77 -52.49 -0.41 1.33 16 14 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 15 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 16 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 C 0.07 1.35 2.36 -67.71 -0.16 1.19 16 21 C -0.14 -2.55 8.95 37.16 0.33 -2.22 16 22 C -0.17 -2.98 7.45 37.15 0.28 -2.70 16 23 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.41 7.71 -51.93 -0.40 0.01 16 25 H 0.06 0.45 7.71 -51.92 -0.40 0.05 16 26 H 0.13 1.22 6.47 -52.48 -0.34 0.88 16 27 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.16 2.53 8.04 -52.49 -0.42 2.11 16 29 H 0.09 1.86 7.27 -51.93 -0.38 1.49 16 30 H 0.04 0.75 6.06 -51.93 -0.31 0.44 16 31 H -0.01 -0.17 7.30 -51.93 -0.38 -0.55 16 32 H 0.04 0.98 5.83 -51.92 -0.30 0.67 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.08 1.35 4.31 -51.93 -0.22 1.12 16 35 H 0.06 1.19 6.43 -51.93 -0.33 0.85 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.00 5.19 -51.93 -0.27 0.73 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 1.09 6.80 -51.93 -0.35 0.74 16 LS Contribution 312.07 15.07 4.70 4.70 Total: -1.00 -31.03 312.07 -7.08 -38.11 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.77 Total: 0.17 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -0.49 Total: -9.28 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.41 Total: -46.27 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.09 Total: -4.08 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.03 -7.08 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383456982.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.456 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds