Wall clock time and date at job start Mon Mar 30 2020 06:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35745 * 117.00024 * 2 1 4 4 C 1.39285 * 120.84509 * 0.02562 * 3 2 1 5 5 C 1.37952 * 119.09360 * 179.97438 * 4 3 2 6 6 N 1.31979 * 120.81991 * 359.74871 * 5 4 3 7 7 C 1.31940 * 121.86495 * 0.52570 * 6 5 4 8 8 C 1.37988 * 120.82222 * 359.46638 * 7 6 5 9 9 C 1.50703 * 120.45597 * 180.23615 * 8 7 6 10 10 N 1.46899 * 109.47324 * 260.00428 * 9 8 7 11 11 C 1.46893 * 111.00011 * 169.99806 * 10 9 8 12 12 C 1.50703 * 109.47308 * 284.59239 * 11 10 9 13 13 H 1.07993 * 120.00069 * 359.43246 * 12 11 10 14 14 C 1.37874 * 120.00045 * 179.42493 * 12 11 10 15 15 N 1.31522 * 120.00349 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00076 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47051 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47195 * 120.00309 * 16 14 12 19 19 H 1.48504 * 109.47562 * 240.00459 * 16 14 12 20 20 C 1.46905 * 110.99985 * 293.95353 * 10 9 8 21 21 C 1.53006 * 109.46760 * 172.81050 * 20 10 9 22 22 C 1.52994 * 109.47112 * 292.81041 * 20 10 9 23 23 H 1.08997 * 109.47481 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47688 * 300.00269 * 1 2 3 25 25 H 1.09011 * 109.47161 * 60.00043 * 1 2 3 26 26 H 1.08004 * 120.45674 * 359.95669 * 4 3 2 27 27 H 1.07998 * 119.58800 * 179.97438 * 5 4 3 28 28 H 1.07997 * 119.58720 * 179.75723 * 7 6 5 29 29 H 1.09002 * 109.46808 * 20.00090 * 9 8 7 30 30 H 1.08999 * 109.47171 * 140.00685 * 9 8 7 31 31 H 1.08998 * 109.47465 * 44.59871 * 11 10 9 32 32 H 1.09009 * 109.47073 * 164.59751 * 11 10 9 33 33 H 0.96994 * 119.99878 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.47149 * 52.81296 * 20 10 9 35 35 H 1.08997 * 109.47035 * 66.23592 * 21 20 10 36 36 H 1.09005 * 109.46423 * 186.23200 * 21 20 10 37 37 H 1.08999 * 109.47454 * 306.22968 * 21 20 10 38 38 H 1.09004 * 109.47088 * 60.00291 * 22 20 10 39 39 H 1.08998 * 109.47091 * 179.97438 * 22 20 10 40 40 H 1.09000 * 109.47321 * 300.00149 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0060 7 6 4.0230 2.5511 0.0004 8 6 3.4345 1.3030 0.0000 9 6 4.2838 0.0581 -0.0011 10 7 4.3605 -0.4812 -1.3654 11 6 5.3640 -1.5503 -1.4532 12 6 6.7443 -0.9453 -1.4488 13 1 6.8638 0.1267 -1.3961 14 6 7.8545 -1.7604 -1.5117 15 7 7.7090 -3.0660 -1.5762 16 14 9.5653 -1.0105 -1.5055 17 1 9.4572 0.4684 -1.4267 18 1 10.3224 -1.5143 -0.3315 19 1 10.2766 -1.3895 -2.7529 20 6 3.0459 -0.9546 -1.8190 21 6 3.1253 -1.3408 -3.2974 22 6 2.6309 -2.1748 -0.9947 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8901 26 1 0.2243 2.3567 0.0003 27 1 1.4006 4.5174 0.0011 28 1 5.0998 2.6330 0.0008 29 1 5.2864 0.3020 0.3500 30 1 3.8385 -0.6861 0.6592 31 1 5.2579 -2.2194 -0.5993 32 1 5.2166 -2.1121 -2.3756 33 1 8.4901 -3.6393 -1.6208 34 1 2.3096 -0.1613 -1.6898 35 1 3.7776 -2.2065 -3.4122 36 1 2.1281 -1.5863 -3.6628 37 1 3.5265 -0.5049 -3.8703 38 1 2.5743 -1.8996 0.0585 39 1 1.6553 -2.5258 -1.3310 40 1 3.3672 -2.9681 -1.1239 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383456982.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:06 Heat of formation + Delta-G solvation = -12.277949 kcal Electronic energy + Delta-G solvation = -21012.389691 eV Core-core repulsion = 18020.183740 eV Total energy + Delta-G solvation = -2992.205951 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.83171 -39.23365 -38.96025 -34.85382 -33.92848 -32.11616 -31.80895 -28.99234 -28.37907 -27.89966 -26.40181 -24.30843 -23.72324 -22.93784 -20.22009 -19.12734 -18.63385 -18.05336 -17.24873 -16.66095 -16.38229 -15.86743 -15.72342 -15.42824 -15.29789 -14.96201 -14.71208 -14.30695 -14.07530 -13.82050 -13.57961 -13.09120 -12.90418 -12.87520 -12.64256 -12.54033 -12.45114 -12.15815 -12.05838 -11.93287 -11.86509 -11.24827 -11.10057 -10.57321 -10.42603 -10.03193 -9.67085 -8.85292 -8.14941 -6.24255 0.18962 0.42084 1.41342 1.42242 1.55818 2.27148 2.43116 2.84834 3.16600 3.48915 3.61967 3.77464 3.91138 4.07402 4.17757 4.32621 4.37511 4.43646 4.45448 4.52577 4.62537 4.75881 4.78930 4.82025 4.90076 4.92669 4.99274 5.06268 5.11365 5.17799 5.24684 5.38949 5.44265 5.55768 5.70338 5.73102 6.16202 6.32103 6.47264 6.76019 6.93122 7.10944 7.45136 8.95085 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.021238 B = 0.006468 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.048750 B = 4327.760069 C = 5262.119888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.312 6.312 3 C 0.164 3.836 4 C -0.253 4.253 5 C 0.122 3.878 6 N -0.530 5.530 7 C 0.133 3.867 8 C -0.165 4.165 9 C 0.118 3.882 10 N -0.532 5.532 11 C 0.211 3.789 12 C -0.518 4.518 13 H 0.060 0.940 14 C 0.002 3.998 15 N -0.936 5.936 16 Si 0.963 3.037 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.280 1.280 20 C 0.072 3.928 21 C -0.138 4.138 22 C -0.158 4.158 23 H 0.114 0.886 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.172 0.828 27 H 0.189 0.811 28 H 0.155 0.845 29 H 0.067 0.933 30 H 0.031 0.969 31 H -0.037 1.037 32 H 0.012 0.988 33 H 0.262 0.738 34 H 0.096 0.904 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.728 8.636 3.345 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.224 6.224 3 C 0.110 3.890 4 C -0.273 4.273 5 C -0.034 4.034 6 N -0.243 5.243 7 C -0.022 4.022 8 C -0.169 4.169 9 C -0.011 4.011 10 N -0.256 5.256 11 C 0.085 3.915 12 C -0.556 4.556 13 H 0.078 0.922 14 C -0.196 4.196 15 N -0.577 5.577 16 Si 0.788 3.212 17 H -0.188 1.188 18 H -0.205 1.205 19 H -0.206 1.206 20 C -0.036 4.036 21 C -0.195 4.195 22 C -0.216 4.216 23 H 0.132 0.868 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.190 0.810 27 H 0.206 0.794 28 H 0.172 0.828 29 H 0.085 0.915 30 H 0.049 0.951 31 H -0.020 1.020 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -17.007 9.426 3.022 19.678 hybrid contribution 0.475 -1.656 0.486 1.790 sum -16.532 7.770 3.509 18.601 Atomic orbital electron populations 1.23429 0.76442 1.05654 1.02815 1.86364 1.23529 1.25482 1.87005 1.19266 0.91496 0.85954 0.92270 1.22458 1.02776 0.91905 1.10177 1.23128 0.89743 0.98522 0.92051 1.67760 1.08499 1.31830 1.16177 1.22541 1.00496 0.86377 0.92774 1.20320 0.92078 0.96949 1.07509 1.20549 0.97893 0.92299 0.90336 1.62359 1.06366 1.35072 1.21788 1.19357 0.89807 0.88401 0.93922 1.21570 0.91540 0.93527 1.48966 0.92224 1.25847 1.03421 0.95146 0.95143 1.70095 1.31059 1.04286 1.52243 0.85421 0.79190 0.78941 0.77603 1.18774 1.20517 1.20584 1.21944 0.90978 0.96397 0.94286 1.21834 1.01315 1.00485 0.95885 1.22215 1.00678 0.98000 1.00744 0.86794 0.90972 0.91024 0.81047 0.79405 0.82775 0.91484 0.95145 1.01960 0.96961 0.92892 0.88672 0.94806 0.90414 0.93417 0.92590 0.90939 0.95925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.84 113.37 1.12 1.26 16 2 O -0.31 -7.75 4.83 -90.70 -0.44 -8.19 16 3 C 0.16 4.49 5.46 22.76 0.12 4.61 16 4 C -0.25 -5.23 9.11 22.45 0.20 -5.03 16 5 C 0.12 2.73 11.17 84.60 0.95 3.68 16 6 N -0.53 -15.76 10.36 -196.09 -2.03 -17.79 16 7 C 0.13 4.39 10.82 84.62 0.92 5.30 16 8 C -0.17 -5.57 5.19 -19.68 -0.10 -5.67 16 9 C 0.12 4.76 4.70 85.56 0.40 5.16 16 10 N -0.53 -23.64 4.39 -880.05 -3.86 -27.50 16 11 C 0.21 11.41 3.46 85.56 0.30 11.70 16 12 C -0.52 -29.94 8.55 25.60 0.22 -29.72 16 13 H 0.06 3.41 7.77 -2.91 -0.02 3.39 16 14 C 0.00 0.11 5.46 84.65 0.46 0.57 16 15 N -0.94 -57.29 13.29 21.45 0.28 -57.00 16 16 Si 0.96 45.36 29.54 68.60 2.03 47.38 16 17 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 C 0.07 2.65 2.36 44.91 0.11 2.76 16 21 C -0.14 -4.94 8.95 71.98 0.64 -4.30 16 22 C -0.16 -5.50 7.45 71.98 0.54 -4.96 16 23 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.07 0.76 7.71 -2.39 -0.02 0.74 16 25 H 0.07 0.80 7.71 -2.38 -0.02 0.78 16 26 H 0.17 2.15 6.47 -2.91 -0.02 2.13 16 27 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 28 H 0.15 5.08 8.04 -2.91 -0.02 5.05 16 29 H 0.07 2.95 7.27 -2.39 -0.02 2.93 16 30 H 0.03 1.26 6.06 -2.39 -0.01 1.24 16 31 H -0.04 -2.20 7.30 -2.39 -0.02 -2.22 16 32 H 0.01 0.72 5.83 -2.38 -0.01 0.71 16 33 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.10 3.20 4.31 -2.39 -0.01 3.19 16 35 H 0.03 1.37 6.43 -2.39 -0.02 1.35 16 36 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 1.95 5.19 -2.39 -0.01 1.94 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.02 0.91 6.80 -2.39 -0.02 0.89 16 Total: -1.00 -69.86 312.07 2.88 -66.98 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.03 Total: 10.75 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 5.87 Total: -14.63 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -5.61 Total: -102.29 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.44 Total: -8.19 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -69.86 2.88 -66.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383456982.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.700 kcal (2) G-P(sol) polarization free energy of solvation -69.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds