Wall clock time and date at job start Mon Mar 30 2020 06:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46838 * 2 1 4 4 N 1.46505 * 109.46943 * 184.88340 * 3 2 1 5 5 N 1.40076 * 126.03918 * 84.66294 * 4 3 2 6 6 C 1.30844 * 108.20602 * 180.02562 * 5 4 3 7 7 C 1.39870 * 108.20105 * 0.02562 * 6 5 4 8 8 C 1.34949 * 126.03253 * 264.95276 * 4 3 2 9 9 C 1.50701 * 126.13015 * 359.97438 * 8 4 3 10 10 H 1.08998 * 110.27212 * 333.72648 * 9 8 4 11 11 C 1.54944 * 110.30961 * 95.81423 * 9 8 4 12 12 C 1.55413 * 100.89437 * 155.28723 * 11 9 8 13 13 C 1.54376 * 102.30898 * 325.99387 * 12 11 9 14 14 C 1.53001 * 109.90897 * 140.84184 * 13 12 11 15 15 C 1.50703 * 109.82871 * 261.77035 * 13 12 11 16 16 H 1.07996 * 119.99897 * 356.91472 * 15 13 12 17 17 C 1.37882 * 119.99965 * 176.91338 * 15 13 12 18 18 N 1.31514 * 120.00199 * 353.11257 * 17 15 13 19 19 Si 1.86800 * 120.00024 * 173.10577 * 17 15 13 20 20 H 1.48502 * 109.46868 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47024 * 120.00158 * 19 17 15 22 22 H 1.48500 * 109.47398 * 240.00345 * 19 17 15 23 23 O 1.43240 * 107.59155 * 21.28372 * 13 12 11 24 24 H 1.09001 * 109.46718 * 184.89746 * 1 2 3 25 25 H 1.09001 * 109.46838 * 304.89409 * 1 2 3 26 26 H 1.08991 * 109.47189 * 64.89954 * 1 2 3 27 27 H 1.09004 * 109.47458 * 240.00062 * 2 1 3 28 28 H 1.08995 * 109.47656 * 119.99503 * 2 1 3 29 29 H 1.08995 * 109.46919 * 64.88178 * 3 2 1 30 30 H 1.09001 * 109.47014 * 304.87824 * 3 2 1 31 31 H 1.07993 * 125.89791 * 179.97438 * 6 5 4 32 32 H 1.07997 * 126.03965 * 179.97438 * 7 6 5 33 33 H 1.08999 * 111.12617 * 273.28053 * 11 9 8 34 34 H 1.09003 * 111.12444 * 37.44271 * 11 9 8 35 35 H 1.09002 * 110.88424 * 207.75348 * 12 11 9 36 36 H 1.09008 * 110.75707 * 84.17083 * 12 11 9 37 37 H 1.09007 * 109.46744 * 300.36300 * 14 13 12 38 38 H 1.08994 * 109.46868 * 60.36365 * 14 13 12 39 39 H 1.09002 * 109.47221 * 180.36946 * 14 13 12 40 40 H 0.96993 * 120.00360 * 185.00484 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5003 1.4443 -0.1176 5 7 4.2311 1.3720 -1.3104 6 6 5.5047 1.3988 -1.0118 7 6 5.6256 1.4884 0.3788 8 6 4.3789 1.5104 0.9046 9 6 4.0336 1.5960 2.3690 10 1 3.0521 2.0517 2.4995 11 6 4.0618 0.1863 3.0115 12 6 4.3366 0.5465 4.4981 13 6 5.2443 1.7890 4.3733 14 6 4.8762 2.8133 5.4486 15 6 6.6881 1.3846 4.5256 16 1 6.9410 0.3577 4.7442 17 6 7.6860 2.3257 4.3859 18 7 7.3902 3.5436 3.9874 19 14 9.4582 1.8709 4.7628 20 1 9.5245 0.4499 5.1890 21 1 10.2877 2.0615 3.5459 22 1 9.9711 2.7395 5.8526 23 8 5.0318 2.3515 3.0733 24 1 -0.3633 -1.0239 0.0877 25 1 -0.3633 0.5879 0.8429 26 1 -0.3633 0.4359 -0.9305 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.7497 1.9305 0.9305 30 1 1.6070 1.9810 -0.8431 31 1 6.3215 1.3579 -1.7171 32 1 6.5505 1.5291 0.9349 33 1 3.1011 -0.3162 2.8985 34 1 4.8698 -0.4176 2.5985 35 1 4.8580 -0.2656 5.0047 36 1 3.4085 0.7944 5.0135 37 1 3.8342 3.1092 5.3269 38 1 5.0155 2.3706 6.4348 39 1 5.5166 3.6898 5.3499 40 1 8.0987 4.1844 3.8193 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383794766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:56 Heat of formation + Delta-G solvation = 24.470248 kcal Electronic energy + Delta-G solvation = -20927.968173 eV Core-core repulsion = 17937.355743 eV Total energy + Delta-G solvation = -2990.612430 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.77284 -38.25143 -35.28187 -33.08438 -31.39966 -31.02189 -30.56103 -28.57820 -26.06504 -25.30964 -24.53961 -22.02319 -21.42222 -20.46947 -19.54799 -18.84839 -17.02800 -16.21088 -15.37597 -15.02540 -14.64817 -14.45259 -14.14551 -13.56397 -13.26343 -13.11791 -12.85077 -12.53419 -12.38805 -12.18577 -11.83206 -11.51649 -11.42747 -11.36056 -10.93512 -10.91156 -10.85984 -10.69610 -10.45518 -10.35452 -10.22704 -9.97007 -9.62388 -9.16443 -8.76139 -8.47435 -8.02401 -7.77579 -5.92663 -4.07896 2.35669 2.87980 3.30839 3.39983 3.42604 3.44909 4.44400 4.66682 4.79807 4.85329 5.06196 5.16292 5.26675 5.39221 5.43389 5.47520 5.55501 5.56149 5.65983 5.83843 5.88135 5.93121 6.10018 6.11651 6.27677 6.38697 6.45967 6.52752 6.71122 6.75632 6.83848 6.92372 7.06726 7.25741 7.29213 7.54445 7.77560 8.01063 8.22351 8.35138 8.57688 9.05077 9.61902 11.09830 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.023947 B = 0.006338 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.949284 B = 4417.050751 C = 5096.187324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.134 3.866 4 N -0.374 5.374 5 N -0.313 5.313 6 C 0.037 3.963 7 C -0.238 4.238 8 C 0.097 3.903 9 C 0.139 3.861 10 H 0.053 0.947 11 C -0.135 4.135 12 C -0.141 4.141 13 C 0.227 3.773 14 C -0.136 4.136 15 C -0.534 4.534 16 H 0.060 0.940 17 C 0.084 3.916 18 N -0.854 5.854 19 Si 0.882 3.118 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 O -0.328 6.328 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.177 0.823 32 H 0.154 0.846 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.014 0.986 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.389 -5.176 -5.015 12.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.012 3.988 4 N -0.159 5.159 5 N -0.134 5.134 6 C -0.148 4.148 7 C -0.267 4.267 8 C -0.030 4.030 9 C 0.078 3.922 10 H 0.070 0.930 11 C -0.173 4.173 12 C -0.179 4.179 13 C 0.190 3.810 14 C -0.194 4.194 15 C -0.572 4.572 16 H 0.078 0.922 17 C -0.122 4.122 18 N -0.489 5.489 19 Si 0.710 3.290 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 O -0.246 6.246 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.194 0.806 32 H 0.172 0.828 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.200 -4.831 -5.982 13.585 hybrid contribution 1.561 -0.294 0.793 1.776 sum -9.638 -5.125 -5.189 12.087 Atomic orbital electron populations 1.21695 0.94666 1.02196 1.02058 1.21945 0.96296 0.96293 1.03393 1.21653 0.75599 0.98005 1.03544 1.48452 1.05554 1.58297 1.03581 1.77187 1.04839 1.26212 1.05185 1.23790 0.94139 1.00569 0.96289 1.21368 0.98253 1.13797 0.93255 1.21169 0.90262 1.00295 0.91237 1.20989 0.93146 0.92645 0.85453 0.92995 1.23148 1.00941 0.96382 0.96859 1.23240 0.99252 1.00724 0.94689 1.19726 0.93543 0.87197 0.80550 1.21943 0.97733 1.02138 0.97598 1.21202 0.90137 0.94905 1.50918 0.92208 1.24985 0.98529 0.94765 0.93953 1.70016 1.32030 1.04231 1.42648 0.86714 0.85596 0.78602 0.78110 1.19792 1.20950 1.21010 1.88904 1.55423 1.51341 1.28929 0.92193 0.92322 0.92470 0.91074 0.91252 0.89181 0.89422 0.80612 0.82808 0.92261 0.90424 0.90958 0.92956 0.96719 0.94150 0.90231 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.14 -1.59 6.26 -26.73 -0.17 -1.76 16 3 C 0.13 1.76 6.30 -4.03 -0.03 1.73 16 4 N -0.37 -6.56 3.61 -57.13 -0.21 -6.76 16 5 N -0.31 -5.74 12.58 30.62 0.39 -5.36 16 6 C 0.04 0.67 12.03 -17.36 -0.21 0.46 16 7 C -0.24 -4.91 10.35 -40.01 -0.41 -5.32 16 8 C 0.10 1.91 6.05 -82.26 -0.50 1.42 16 9 C 0.14 2.78 3.67 -26.86 -0.10 2.68 16 10 H 0.05 0.96 6.95 -51.93 -0.36 0.60 16 11 C -0.13 -2.46 6.57 -24.42 -0.16 -2.62 16 12 C -0.14 -2.79 6.08 -24.73 -0.15 -2.94 16 13 C 0.23 5.45 0.82 -91.05 -0.07 5.37 16 14 C -0.14 -3.18 8.56 37.16 0.32 -2.87 16 15 C -0.53 -14.14 8.21 -34.44 -0.28 -14.43 16 16 H 0.06 1.57 7.47 -52.49 -0.39 1.18 16 17 C 0.08 2.26 5.20 -17.82 -0.09 2.17 16 18 N -0.85 -24.11 11.17 55.43 0.62 -23.49 16 19 Si 0.88 20.79 29.55 -169.99 -5.02 15.77 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 O -0.33 -8.16 9.21 -35.23 -0.32 -8.48 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.83 7.96 -51.93 -0.41 0.41 16 29 H 0.09 1.10 6.87 -51.93 -0.36 0.74 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.18 2.52 8.06 -52.49 -0.42 2.10 16 32 H 0.15 3.48 8.06 -52.49 -0.42 3.06 16 33 H 0.06 0.89 7.96 -51.93 -0.41 0.48 16 34 H 0.08 1.51 8.05 -51.93 -0.42 1.09 16 35 H 0.07 1.41 7.59 -51.93 -0.39 1.01 16 36 H 0.05 0.92 7.85 -51.92 -0.41 0.52 16 37 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 2.08 6.54 -51.93 -0.34 1.74 16 40 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 LS Contribution 326.12 15.07 4.91 4.91 Total: -1.00 -30.24 326.12 -7.56 -37.79 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.44 Total: 2.59 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -1.49 Total: -16.97 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.80 Total: -35.61 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.32 Total: -8.48 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.24 -7.56 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383794766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.265 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds