Wall clock time and date at job start Mon Mar 30 2020 07:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47109 * 2 1 4 4 C 1.53001 * 109.47042 * 240.00562 * 2 1 3 5 5 C 1.50694 * 109.47168 * 64.99902 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.50699 * 109.47212 * 120.00210 * 2 1 3 14 14 N 1.31128 * 126.55372 * 239.70782 * 13 2 1 15 15 C 1.34494 * 105.61555 * 179.91550 * 14 13 2 16 16 C 1.50696 * 126.28776 * 180.12621 * 15 14 13 17 17 H 1.09001 * 110.01927 * 1.63757 * 16 15 14 18 18 C 1.54268 * 110.03122 * 123.08021 * 16 15 14 19 19 C 1.54893 * 104.19678 * 142.89782 * 18 16 15 20 20 C 1.54888 * 102.74659 * 322.05387 * 19 18 16 21 21 C 1.53881 * 110.03732 * 240.24387 * 16 15 14 22 22 H 1.09005 * 110.02773 * 0.02562 * 21 16 15 23 23 C 1.52999 * 110.03283 * 121.42773 * 21 16 15 24 24 N 1.29952 * 107.42427 * 0.35786 * 15 14 13 25 25 O 1.21297 * 110.25243 * 359.77228 * 24 15 14 26 26 H 1.08999 * 109.47109 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47003 * 299.99485 * 1 2 3 28 28 H 1.08996 * 109.47478 * 59.99562 * 1 2 3 29 29 H 1.09007 * 109.46922 * 304.99603 * 4 2 1 30 30 H 1.09003 * 109.46836 * 185.00359 * 4 2 1 31 31 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 32 32 H 1.09003 * 110.48295 * 261.57196 * 18 16 15 33 33 H 1.08995 * 110.48917 * 24.21434 * 18 16 15 34 34 H 1.09000 * 110.75019 * 203.73797 * 19 18 16 35 35 H 1.09000 * 110.91467 * 80.44520 * 19 18 16 36 36 H 1.08997 * 110.48870 * 279.26511 * 20 19 18 37 37 H 1.09001 * 110.48485 * 156.62361 * 20 19 18 38 38 H 1.09003 * 109.46509 * 60.00482 * 23 21 16 39 39 H 1.08999 * 109.47079 * 179.97438 * 23 21 16 40 40 H 1.08996 * 109.47075 * 300.00540 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4765 6 1 1.0806 0.9748 -2.3756 7 6 1.9923 -0.4020 -3.7284 8 7 2.6755 -1.5190 -3.8513 9 14 1.4975 0.5625 -5.2496 10 1 1.9926 -0.1374 -6.4622 11 1 0.0175 0.6690 -5.3086 12 1 2.0896 1.9229 -5.1875 13 6 2.0324 -0.7104 1.2304 14 7 2.7936 -0.2024 2.1695 15 6 2.9822 -1.1938 3.0585 16 6 3.7897 -1.1116 4.3282 17 1 4.1905 -0.1054 4.4510 18 6 2.9092 -1.4822 5.5394 19 6 3.8611 -2.2683 6.4748 20 6 4.7151 -3.0922 5.4792 21 6 4.9380 -2.1352 4.2900 22 1 4.9114 -2.6912 3.3528 23 6 6.2826 -1.4203 4.4374 24 7 2.3443 -2.2372 2.6190 25 8 1.7919 -1.9805 1.5700 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6054 -1.7198 -1.2953 30 1 3.1263 -0.7994 -1.2056 31 1 2.9221 -1.8423 -4.7320 32 1 2.5442 -0.5827 6.0352 33 1 2.0758 -2.1115 5.2269 34 1 3.2968 -2.9259 7.1360 35 1 4.4885 -1.5889 7.0517 36 1 4.1735 -3.9815 5.1570 37 1 5.6680 -3.3676 5.9311 38 1 6.3087 -0.8880 5.3882 39 1 7.0889 -2.1533 4.4096 40 1 6.4081 -0.7103 3.6199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385016719.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:18 Heat of formation + Delta-G solvation = 27.950349 kcal Electronic energy + Delta-G solvation = -19995.861168 eV Core-core repulsion = 17005.399647 eV Total energy + Delta-G solvation = -2990.461521 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.07071 -38.91133 -35.85696 -34.94620 -32.56844 -31.22391 -30.96786 -28.90444 -27.13189 -25.64363 -24.61501 -23.15965 -22.60910 -20.90733 -20.20035 -18.85237 -17.46074 -16.98509 -16.54157 -15.71455 -15.33098 -14.58597 -14.45606 -14.08699 -13.50639 -13.38723 -12.75835 -12.68504 -12.62311 -12.11568 -11.97970 -11.85408 -11.60786 -11.30980 -11.19670 -10.99314 -10.91076 -10.89488 -10.77659 -10.75484 -10.62369 -10.53294 -10.48830 -10.12960 -9.81825 -9.26580 -9.12352 -8.44135 -6.08230 -4.12355 1.66561 2.66581 3.30201 3.35195 3.36428 3.42880 3.88155 4.24642 4.39906 4.46428 4.67150 4.75002 5.15248 5.18780 5.26025 5.27758 5.28768 5.41287 5.50114 5.63268 5.68547 5.72237 5.77502 5.83446 5.86240 5.88960 5.98035 6.06306 6.10644 6.19219 6.27866 6.32090 6.41547 6.57727 6.68809 6.83201 7.48409 7.56763 7.86960 8.23318 8.66550 8.91757 9.52010 11.03042 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.036157 B = 0.003958 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.213852 B = 7073.274934 C = 7414.360528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.001 4.001 3 H 0.105 0.895 4 C 0.029 3.971 5 C -0.522 4.522 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.896 3.104 10 H -0.287 1.287 11 H -0.275 1.275 12 H -0.276 1.276 13 C 0.217 3.783 14 N -0.503 5.503 15 C 0.170 3.830 16 C 0.005 3.995 17 H 0.101 0.899 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.089 4.089 22 H 0.074 0.926 23 C -0.144 4.144 24 N -0.395 5.395 25 O 0.074 5.926 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.029 0.971 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 -0.101 17.613 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.123 0.877 4 C -0.008 4.008 5 C -0.560 4.560 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.723 3.277 10 H -0.213 1.213 11 H -0.201 1.201 12 H -0.201 1.201 13 C -0.002 4.002 14 N -0.236 5.236 15 C -0.103 4.103 16 C -0.015 4.015 17 H 0.119 0.881 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.108 4.108 22 H 0.093 0.907 23 C -0.201 4.201 24 N -0.106 5.106 25 O 0.018 5.982 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.258 -0.673 18.090 18.243 hybrid contribution -0.210 0.489 -1.165 1.280 sum 2.048 -0.184 16.926 17.050 Atomic orbital electron populations 1.21776 0.93089 1.02507 1.01894 1.20337 0.96498 0.98840 0.86509 0.87716 1.19232 0.96816 0.96055 0.88743 1.21023 1.35993 1.08656 0.90354 0.92002 1.25003 0.94952 0.95026 0.99209 1.69959 1.38155 1.20962 1.23898 0.86601 0.78958 0.80037 0.82099 1.21294 1.20075 1.20140 1.29578 0.91470 0.81824 0.97312 1.71935 1.18243 1.29848 1.03561 1.25635 0.99836 0.85653 0.99224 1.20239 0.93157 1.01421 0.86726 0.88091 1.22453 0.98068 1.00461 0.94437 1.22465 0.97611 0.98549 0.97219 1.22426 0.99984 0.98022 0.95161 1.21783 0.93876 0.95521 0.99644 0.90744 1.21882 0.95824 1.00436 1.01948 1.74508 1.13640 1.23895 0.98524 1.85280 1.54262 1.29989 1.28688 0.92341 0.94124 0.89678 0.95294 0.96049 0.92731 0.91085 0.90904 0.91336 0.91255 0.91331 0.91294 0.92395 0.92416 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.99 37.16 0.33 -2.01 16 2 C 0.00 -0.03 2.81 -91.77 -0.26 -0.29 16 3 H 0.10 2.05 8.14 -51.93 -0.42 1.62 16 4 C 0.03 0.73 4.43 -27.89 -0.12 0.60 16 5 C -0.52 -13.74 8.41 -34.44 -0.29 -14.03 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 9 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.22 4.31 7.02 -13.06 -0.09 4.22 16 14 N -0.50 -9.75 11.55 -9.86 -0.11 -9.86 16 15 C 0.17 2.97 6.45 -156.37 -1.01 1.96 16 16 C 0.00 0.06 3.09 -90.65 -0.28 -0.22 16 17 H 0.10 1.28 7.67 -51.93 -0.40 0.88 16 18 C -0.12 -1.30 6.35 -25.07 -0.16 -1.46 16 19 C -0.12 -1.09 6.91 -24.74 -0.17 -1.26 16 20 C -0.12 -1.18 6.37 -25.07 -0.16 -1.34 16 21 C -0.09 -1.07 3.15 -89.50 -0.28 -1.35 16 22 H 0.07 1.08 7.66 -51.93 -0.40 0.69 16 23 C -0.14 -1.47 8.83 37.16 0.33 -1.14 16 24 N -0.40 -7.45 11.92 30.90 0.37 -7.09 16 25 O 0.07 1.47 11.31 18.08 0.20 1.68 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 29 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.93 7.66 -51.93 -0.40 0.53 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.58 7.84 -51.93 -0.41 0.18 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -29.23 328.03 -7.68 -36.91 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.54 Total: -2.35 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -2.26 Total: -14.76 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.99 Total: -42.18 kcal Atomic # 8 Polarization: 1.47 SS G_CDS: 0.20 Total: 1.68 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.23 -7.68 -36.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385016719.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.863 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds