Wall clock time and date at job start Mon Mar 30 2020 07:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47109 * 2 1 4 4 C 1.53001 * 109.47042 * 240.00562 * 2 1 3 5 5 C 1.50694 * 109.47168 * 64.99902 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.50699 * 109.47212 * 120.00210 * 2 1 3 14 14 N 1.31128 * 126.55372 * 239.70782 * 13 2 1 15 15 C 1.34494 * 105.61555 * 179.91550 * 14 13 2 16 16 C 1.50696 * 126.28776 * 180.12621 * 15 14 13 17 17 H 1.09001 * 110.01927 * 1.63757 * 16 15 14 18 18 C 1.54268 * 110.03122 * 123.08021 * 16 15 14 19 19 C 1.54893 * 104.19678 * 142.89782 * 18 16 15 20 20 C 1.54888 * 102.74659 * 322.05387 * 19 18 16 21 21 C 1.53881 * 110.03732 * 240.24387 * 16 15 14 22 22 H 1.09005 * 110.02773 * 0.02562 * 21 16 15 23 23 C 1.52999 * 110.03283 * 121.42773 * 21 16 15 24 24 N 1.29952 * 107.42427 * 0.35786 * 15 14 13 25 25 O 1.21297 * 110.25243 * 359.77228 * 24 15 14 26 26 H 1.08999 * 109.47109 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47003 * 299.99485 * 1 2 3 28 28 H 1.08996 * 109.47478 * 59.99562 * 1 2 3 29 29 H 1.09007 * 109.46922 * 304.99603 * 4 2 1 30 30 H 1.09003 * 109.46836 * 185.00359 * 4 2 1 31 31 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 32 32 H 1.09003 * 110.48295 * 261.57196 * 18 16 15 33 33 H 1.08995 * 110.48917 * 24.21434 * 18 16 15 34 34 H 1.09000 * 110.75019 * 203.73797 * 19 18 16 35 35 H 1.09000 * 110.91467 * 80.44520 * 19 18 16 36 36 H 1.08997 * 110.48870 * 279.26511 * 20 19 18 37 37 H 1.09001 * 110.48485 * 156.62361 * 20 19 18 38 38 H 1.09003 * 109.46509 * 60.00482 * 23 21 16 39 39 H 1.08999 * 109.47079 * 179.97438 * 23 21 16 40 40 H 1.08996 * 109.47075 * 300.00540 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4765 6 1 1.0806 0.9748 -2.3756 7 6 1.9923 -0.4020 -3.7284 8 7 2.6755 -1.5190 -3.8513 9 14 1.4975 0.5625 -5.2496 10 1 1.9926 -0.1374 -6.4622 11 1 0.0175 0.6690 -5.3086 12 1 2.0896 1.9229 -5.1875 13 6 2.0324 -0.7104 1.2304 14 7 2.7936 -0.2024 2.1695 15 6 2.9822 -1.1938 3.0585 16 6 3.7897 -1.1116 4.3282 17 1 4.1905 -0.1054 4.4510 18 6 2.9092 -1.4822 5.5394 19 6 3.8611 -2.2683 6.4748 20 6 4.7151 -3.0922 5.4792 21 6 4.9380 -2.1352 4.2900 22 1 4.9114 -2.6912 3.3528 23 6 6.2826 -1.4203 4.4374 24 7 2.3443 -2.2372 2.6190 25 8 1.7919 -1.9805 1.5700 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6054 -1.7198 -1.2953 30 1 3.1263 -0.7994 -1.2056 31 1 2.9221 -1.8423 -4.7320 32 1 2.5442 -0.5827 6.0352 33 1 2.0758 -2.1115 5.2269 34 1 3.2968 -2.9259 7.1360 35 1 4.4885 -1.5889 7.0517 36 1 4.1735 -3.9815 5.1570 37 1 5.6680 -3.3676 5.9311 38 1 6.3087 -0.8880 5.3882 39 1 7.0889 -2.1533 4.4096 40 1 6.4081 -0.7103 3.6199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385016719.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:17 Heat of formation + Delta-G solvation = 11.096281 kcal Electronic energy + Delta-G solvation = -19996.592015 eV Core-core repulsion = 17005.399647 eV Total energy + Delta-G solvation = -2991.192368 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.57806 -39.86645 -37.54605 -36.44943 -34.51215 -32.55030 -32.02327 -29.98851 -29.01250 -26.54993 -26.30227 -24.68304 -24.19378 -22.11160 -21.28397 -20.08016 -18.99131 -18.64283 -18.33645 -16.81817 -16.51854 -16.37732 -15.92799 -15.21146 -15.00216 -14.43805 -14.36737 -13.88207 -13.71774 -13.51322 -13.42463 -13.09313 -13.00577 -12.84577 -12.67067 -12.48362 -12.28329 -12.19371 -12.11224 -11.94542 -11.85776 -11.71227 -11.62360 -11.47973 -11.43816 -11.28311 -10.71261 -10.54654 -8.18428 -6.29667 0.11887 1.19891 1.46560 1.49119 1.56500 1.86338 2.43003 2.58369 3.01733 3.16840 3.54358 3.60191 3.72501 4.07412 4.16333 4.26679 4.30910 4.35994 4.37790 4.48443 4.52419 4.60355 4.70921 4.79440 4.87893 4.89588 4.96536 5.02395 5.06123 5.06903 5.12023 5.19917 5.25204 5.34375 5.35416 5.38912 5.44769 5.56430 5.78593 6.15156 6.84122 7.13757 7.39813 8.94005 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.036157 B = 0.003958 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.213852 B = 7073.274934 C = 7414.360528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.009 3.991 3 H 0.112 0.888 4 C 0.038 3.962 5 C -0.530 4.530 6 H 0.079 0.921 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.290 1.290 11 H -0.261 1.261 12 H -0.266 1.266 13 C 0.210 3.790 14 N -0.513 5.513 15 C 0.177 3.823 16 C -0.001 4.001 17 H 0.111 0.889 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.116 4.116 21 C -0.090 4.090 22 H 0.039 0.961 23 C -0.139 4.139 24 N -0.408 5.408 25 O 0.054 5.946 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.003 0.997 30 H -0.015 1.015 31 H 0.263 0.737 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 1.337 19.268 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.012 4.012 3 H 0.130 0.870 4 C 0.000 4.000 5 C -0.568 4.568 6 H 0.097 0.903 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.792 3.208 10 H -0.216 1.216 11 H -0.186 1.186 12 H -0.191 1.191 13 C -0.009 4.009 14 N -0.247 5.247 15 C -0.096 4.096 16 C -0.021 4.021 17 H 0.129 0.871 18 C -0.152 4.152 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.110 4.110 22 H 0.058 0.942 23 C -0.196 4.196 24 N -0.121 5.121 25 O 0.003 5.997 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.022 0.978 30 H 0.003 0.997 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.014 0.772 19.742 19.859 hybrid contribution -0.088 0.011 -1.624 1.626 sum 1.926 0.782 18.118 18.237 Atomic orbital electron populations 1.21728 0.90767 1.02766 1.03291 1.20145 0.98335 0.98272 0.84431 0.86981 1.19021 0.94413 0.95410 0.91197 1.21476 1.35427 1.09085 0.90828 0.90255 1.25976 0.94913 0.95944 1.02856 1.70117 1.39852 1.23006 1.24595 0.85463 0.79223 0.78579 0.77584 1.21617 1.18587 1.19094 1.29540 0.91828 0.81953 0.97590 1.71949 1.18124 1.30617 1.03977 1.26439 0.98824 0.84557 0.99799 1.20613 0.93520 1.02463 0.85552 0.87106 1.22468 0.97615 1.01184 0.93954 1.22467 0.97131 0.98561 0.96628 1.22422 1.01214 0.97115 0.94561 1.21800 0.94523 0.95558 0.99094 0.94204 1.21860 0.94854 1.00373 1.02556 1.74506 1.14571 1.24523 0.98480 1.85263 1.54941 1.30141 1.29391 0.92704 0.91280 0.89602 0.97825 0.99661 0.92840 0.89488 0.92891 0.89969 0.89011 0.92698 0.89134 0.90059 0.91343 0.93851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 8.99 71.98 0.65 -3.67 16 2 C 0.01 0.34 2.81 -11.54 -0.03 0.31 16 3 H 0.11 4.33 8.14 -2.39 -0.02 4.31 16 4 C 0.04 1.92 4.43 29.85 0.13 2.06 16 5 C -0.53 -28.09 8.41 25.60 0.22 -27.88 16 6 H 0.08 3.84 7.06 -2.91 -0.02 3.82 16 7 C 0.00 0.06 5.46 84.66 0.46 0.52 16 8 N -0.94 -56.06 13.29 21.45 0.28 -55.77 16 9 Si 0.97 42.47 29.54 68.60 2.03 44.50 16 10 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 12 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 13 C 0.21 8.52 7.02 88.38 0.62 9.14 16 14 N -0.51 -20.01 11.55 -303.17 -3.50 -23.51 16 15 C 0.18 6.24 6.45 138.46 0.89 7.13 16 16 C 0.00 -0.04 3.09 -10.81 -0.03 -0.07 16 17 H 0.11 2.62 7.67 -2.39 -0.02 2.60 16 18 C -0.11 -2.34 6.35 31.67 0.20 -2.14 16 19 C -0.11 -1.64 6.91 31.89 0.22 -1.42 16 20 C -0.12 -2.09 6.37 31.67 0.20 -1.89 16 21 C -0.09 -2.11 3.15 -10.07 -0.03 -2.14 16 22 H 0.04 1.19 7.66 -2.38 -0.02 1.18 16 23 C -0.14 -2.61 8.83 71.98 0.64 -1.97 16 24 N -0.41 -15.79 11.92 -60.30 -0.72 -16.51 16 25 O 0.05 2.25 11.31 74.75 0.85 3.10 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.09 2.89 6.95 -2.39 -0.02 2.87 16 29 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 30 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 31 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.31 7.66 -2.39 -0.02 1.29 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.26 7.84 -2.39 -0.02 1.24 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -64.66 328.03 4.07 -60.59 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.01 Total: 9.62 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 4.13 Total: -22.01 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -3.94 Total: -95.79 kcal Atomic # 8 Polarization: 2.25 SS G_CDS: 0.85 Total: 3.10 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -64.66 4.07 -60.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385016719.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.688 kcal (2) G-P(sol) polarization free energy of solvation -64.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds