Wall clock time and date at job start Mon Mar 30 2020 07:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.46811 * 2 1 4 4 C 1.53006 * 109.47234 * 240.00363 * 2 1 3 5 5 C 1.50698 * 109.47184 * 64.99402 * 4 2 1 6 6 H 1.08005 * 119.99819 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47261 * 60.00310 * 9 7 5 12 12 H 1.48500 * 109.47454 * 300.00304 * 9 7 5 13 13 C 1.50703 * 109.47333 * 120.00133 * 2 1 3 14 14 N 1.31125 * 126.55154 * 240.00040 * 13 2 1 15 15 C 1.34490 * 105.61713 * 180.02562 * 14 13 2 16 16 C 1.50703 * 126.29066 * 180.02562 * 15 14 13 17 17 H 1.09001 * 110.01650 * 358.60709 * 16 15 14 18 18 C 1.54258 * 110.03196 * 237.16291 * 16 15 14 19 19 C 1.54890 * 104.19702 * 217.10450 * 18 16 15 20 20 C 1.54885 * 102.74766 * 37.94488 * 19 18 16 21 21 C 1.53873 * 110.03173 * 119.99712 * 16 15 14 22 22 H 1.09002 * 110.03464 * 0.02562 * 21 16 15 23 23 C 1.52996 * 110.03341 * 238.61718 * 21 16 15 24 24 N 1.29950 * 107.42221 * 359.97438 * 15 14 13 25 25 O 1.21302 * 110.24904 * 359.70921 * 24 15 14 26 26 H 1.09003 * 109.47743 * 60.00182 * 1 2 3 27 27 H 1.09006 * 109.47389 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47112 * 299.99667 * 1 2 3 29 29 H 1.09001 * 109.47002 * 304.99997 * 4 2 1 30 30 H 1.08993 * 109.46955 * 184.99560 * 4 2 1 31 31 H 0.97001 * 119.99934 * 359.97438 * 8 7 5 32 32 H 1.09005 * 110.48756 * 335.78389 * 18 16 15 33 33 H 1.09006 * 110.48666 * 98.42825 * 18 16 15 34 34 H 1.08997 * 110.75530 * 279.62779 * 19 18 16 35 35 H 1.09004 * 110.91362 * 156.33438 * 19 18 16 36 36 H 1.08997 * 110.48577 * 203.38297 * 20 19 18 37 37 H 1.09006 * 110.48806 * 80.73497 * 20 19 18 38 38 H 1.09004 * 109.46859 * 60.00070 * 23 21 16 39 39 H 1.09005 * 109.47514 * 180.02562 * 23 21 16 40 40 H 1.08997 * 109.47462 * 300.00703 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0804 0.9746 -2.3756 7 6 1.9931 -0.4016 -3.7283 8 7 2.6764 -1.5185 -3.8513 9 14 1.4994 0.5635 -5.2496 10 1 1.9944 -0.1365 -6.4622 11 1 2.0915 1.9239 -5.1865 12 1 0.0195 0.6701 -5.3096 13 6 2.0323 -0.7104 1.2305 14 7 2.7892 -0.2008 2.1721 15 6 2.9819 -1.1935 3.0587 16 6 3.7887 -1.1109 4.3289 17 1 4.2292 -0.1188 4.4273 18 6 4.8968 -2.1840 4.3218 19 6 4.9733 -2.6609 5.7935 20 6 3.4876 -2.6583 6.2312 21 6 2.8926 -1.4125 5.5430 22 1 1.8743 -1.6191 5.2134 23 6 2.9006 -0.2254 6.5080 24 7 2.3438 -2.2368 2.6194 25 8 1.7866 -1.9785 1.5733 26 1 -0.3635 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -1.7198 -1.2953 30 1 3.1262 -0.7993 -1.2057 31 1 2.9331 -2.0195 -3.0613 32 1 4.6230 -3.0109 3.6666 33 1 5.8471 -1.7490 4.0119 34 1 5.5548 -1.9630 6.3959 35 1 5.3928 -3.6651 5.8558 36 1 3.4094 -2.5694 7.3148 37 1 2.9861 -3.5619 5.8844 38 1 2.5249 0.6610 5.9968 39 1 2.2639 -0.4487 7.3642 40 1 3.9190 -0.0426 6.8509 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385016736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:19 Heat of formation + Delta-G solvation = 6.908838 kcal Electronic energy + Delta-G solvation = -20018.357547 eV Core-core repulsion = 17026.983597 eV Total energy + Delta-G solvation = -2991.373949 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.66910 -39.91025 -37.75270 -36.56948 -34.69844 -32.56056 -32.05379 -30.03358 -28.67744 -26.58049 -26.28433 -24.75023 -24.31373 -22.29322 -21.35765 -20.16767 -19.16267 -18.79411 -18.52237 -16.86918 -16.74345 -16.05972 -15.67859 -15.47673 -15.11487 -14.48583 -14.40356 -14.03583 -13.75892 -13.57343 -13.48691 -13.20774 -13.08450 -12.95824 -12.58603 -12.45588 -12.28688 -12.20547 -12.04059 -11.95903 -11.91502 -11.77686 -11.66094 -11.62467 -11.46710 -10.90413 -10.68639 -10.53337 -8.66324 -6.38203 0.02473 1.11836 1.58665 1.66810 1.75878 1.84876 2.47281 2.62118 2.93803 3.19014 3.49824 3.55634 3.66593 3.98278 4.05014 4.11905 4.27566 4.32353 4.32880 4.40048 4.50237 4.52406 4.66048 4.70420 4.80002 4.86363 4.87627 4.91867 4.94850 5.04939 5.08327 5.10275 5.17460 5.20779 5.22217 5.31693 5.37077 5.42929 5.92037 6.18356 6.53974 7.05059 7.44090 8.74016 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.040885 B = 0.003859 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.682753 B = 7253.333349 C = 7536.628606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.016 3.984 3 H 0.111 0.889 4 C 0.022 3.978 5 C -0.605 4.605 6 H 0.071 0.929 7 C -0.038 4.038 8 N -0.940 5.940 9 Si 1.119 2.881 10 H -0.291 1.291 11 H -0.268 1.268 12 H -0.263 1.263 13 C 0.207 3.793 14 N -0.510 5.510 15 C 0.178 3.822 16 C -0.002 4.002 17 H 0.111 0.889 18 C -0.119 4.119 19 C -0.111 4.111 20 C -0.115 4.115 21 C -0.085 4.085 22 H 0.048 0.952 23 C -0.139 4.139 24 N -0.406 5.406 25 O 0.055 5.945 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.000 1.000 30 H -0.018 1.018 31 H 0.253 0.747 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 2.009 20.327 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.005 4.005 3 H 0.129 0.871 4 C -0.016 4.016 5 C -0.642 4.642 6 H 0.089 0.911 7 C -0.235 4.235 8 N -0.577 5.577 9 Si 0.939 3.061 10 H -0.217 1.217 11 H -0.193 1.193 12 H -0.188 1.188 13 C -0.013 4.013 14 N -0.244 5.244 15 C -0.095 4.095 16 C -0.022 4.022 17 H 0.129 0.871 18 C -0.158 4.158 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.105 4.105 22 H 0.066 0.934 23 C -0.196 4.196 24 N -0.119 5.119 25 O 0.003 5.997 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.018 0.982 30 H 0.000 1.000 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.892 1.573 19.305 19.389 hybrid contribution -0.008 -0.414 1.023 1.103 sum 0.884 1.159 20.328 20.380 Atomic orbital electron populations 1.21725 0.90672 1.02769 1.03365 1.19983 0.98371 0.98104 0.84020 0.87076 1.19193 0.94083 0.95621 0.92744 1.22291 1.38851 1.10893 0.92184 0.91078 1.27437 0.93734 0.97055 1.05309 1.70923 1.37716 1.16231 1.32860 0.82919 0.77261 0.74444 0.71438 1.21653 1.19265 1.18787 1.29490 0.92048 0.82104 0.97626 1.71952 1.18197 1.30470 1.03819 1.26461 0.98924 0.84381 0.99729 1.20629 0.93765 1.02709 0.85083 0.87118 1.22493 0.97235 0.96625 0.99428 1.22466 0.96608 1.02396 0.93362 1.22430 0.95691 0.96053 1.01113 1.21774 0.97413 0.97728 0.93580 0.93386 1.21858 1.03367 0.95897 0.98452 1.74517 1.14304 1.24466 0.98588 1.85262 1.54609 1.30238 1.29610 0.89683 0.92705 0.91121 0.98160 0.99968 0.93807 0.93340 0.90130 0.89000 0.90196 0.88823 0.92627 0.93431 0.90974 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 8.98 71.98 0.65 -3.72 16 2 C 0.02 0.63 2.81 -11.54 -0.03 0.60 16 3 H 0.11 4.37 8.14 -2.39 -0.02 4.35 16 4 C 0.02 1.09 3.74 29.85 0.11 1.20 16 5 C -0.60 -32.35 8.41 25.60 0.22 -32.13 16 6 H 0.07 3.53 7.06 -2.91 -0.02 3.51 16 7 C -0.04 -2.13 5.46 84.65 0.46 -1.67 16 8 N -0.94 -57.87 13.65 21.45 0.29 -57.58 16 9 Si 1.12 48.31 29.90 68.60 2.05 50.36 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 12 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 13 C 0.21 8.32 7.02 88.38 0.62 8.94 16 14 N -0.51 -19.78 11.55 -303.20 -3.50 -23.28 16 15 C 0.18 6.22 6.45 138.46 0.89 7.11 16 16 C 0.00 -0.05 3.09 -10.82 -0.03 -0.08 16 17 H 0.11 2.60 7.67 -2.39 -0.02 2.58 16 18 C -0.12 -2.68 6.35 31.67 0.20 -2.48 16 19 C -0.11 -1.73 6.91 31.88 0.22 -1.51 16 20 C -0.12 -1.94 6.37 31.67 0.20 -1.74 16 21 C -0.09 -1.79 3.14 -10.07 -0.03 -1.82 16 22 H 0.05 1.24 7.66 -2.39 -0.02 1.22 16 23 C -0.14 -2.19 8.83 71.98 0.64 -1.55 16 24 N -0.41 -15.51 11.92 -60.32 -0.72 -16.23 16 25 O 0.05 2.23 11.31 74.89 0.85 3.08 16 26 H 0.08 2.94 6.95 -2.39 -0.02 2.92 16 27 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.00 0.01 8.01 -2.39 -0.02 -0.01 16 30 H -0.02 -1.01 8.01 -2.39 -0.02 -1.03 16 31 H 0.25 15.93 7.22 -92.71 -0.67 15.26 16 32 H 0.05 1.33 7.66 -2.38 -0.02 1.31 16 33 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.09 1.15 7.84 -2.39 -0.02 1.13 16 37 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -65.78 326.72 4.19 -61.59 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.11 Total: 10.91 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 4.11 Total: -28.85 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -3.93 Total: -97.09 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: 0.85 Total: 3.08 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.05 Total: 50.36 kcal Total: -65.78 4.19 -61.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385016736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.501 kcal (2) G-P(sol) polarization free energy of solvation -65.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds