Wall clock time and date at job start Mon Mar 30 2020 07:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 C 1.50699 * 109.47110 * 119.99564 * 2 1 3 14 14 N 1.31130 * 126.55343 * 240.00212 * 13 2 1 15 15 C 1.34494 * 105.61700 * 179.97438 * 14 13 2 16 16 C 1.50697 * 126.28929 * 179.97438 * 15 14 13 17 17 H 1.09007 * 110.43171 * 2.54668 * 16 15 14 18 18 C 1.54889 * 110.48495 * 125.22606 * 16 15 14 19 19 C 1.54897 * 102.74822 * 156.62250 * 18 16 15 20 20 C 1.54269 * 104.19326 * 322.05779 * 19 18 16 21 21 C 1.53877 * 106.59875 * 23.60942 * 20 19 18 22 22 H 1.09002 * 110.02706 * 119.28336 * 21 20 19 23 23 C 1.52993 * 110.07285 * 240.68947 * 21 20 19 24 24 N 1.29946 * 107.42064 * 0.02562 * 15 14 13 25 25 O 1.21298 * 110.25505 * 359.70344 * 24 15 14 26 26 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 27 27 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 29 29 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 30 30 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 31 31 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 32 32 H 1.09001 * 110.75621 * 274.93323 * 18 16 15 33 33 H 1.08992 * 110.75908 * 38.31033 * 18 16 15 34 34 H 1.08995 * 110.48415 * 203.38225 * 19 18 16 35 35 H 1.08998 * 110.59342 * 80.79084 * 19 18 16 36 36 H 1.08993 * 110.02845 * 264.32372 * 20 19 18 37 37 H 1.09003 * 110.06782 * 142.91561 * 20 19 18 38 38 H 1.09002 * 109.47431 * 177.19172 * 23 21 20 39 39 H 1.09000 * 109.47416 * 297.19273 * 23 21 20 40 40 H 1.09000 * 109.46769 * 57.19369 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7283 8 7 1.6458 0.2776 -4.7993 9 14 2.9637 -1.9884 -3.9026 10 1 2.0246 -3.1328 -4.0199 11 1 3.8126 -1.9183 -5.1190 12 1 3.8253 -2.1756 -2.7077 13 6 2.0324 -0.7103 1.2305 14 7 2.7892 -0.2006 2.1722 15 6 2.9809 -1.1930 3.0595 16 6 3.7881 -1.1105 4.3294 17 1 4.1757 -0.1013 4.4690 18 6 2.9298 -1.5376 5.5459 19 6 3.9966 -1.9760 6.5799 20 6 5.0750 -2.6838 5.7338 21 6 4.9424 -2.1335 4.3029 22 1 5.8690 -1.6433 4.0041 23 6 4.6140 -3.2692 3.3318 24 7 2.3432 -2.2364 2.6199 25 8 1.7870 -1.9785 1.5733 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6055 -1.7198 -1.2951 30 1 3.1264 -0.7994 -1.2055 31 1 1.8931 -0.0454 -5.6799 32 1 2.3489 -0.6961 5.9234 33 1 2.2787 -2.3720 5.2854 34 1 3.5649 -2.6673 7.3036 35 1 4.4183 -1.1082 7.0870 36 1 4.9049 -3.7604 5.7370 37 1 6.0662 -2.4613 6.1290 38 1 4.4732 -2.8619 2.3306 39 1 5.4350 -3.9861 3.3202 40 1 3.6999 -3.7687 3.6528 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385016747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:25 Heat of formation + Delta-G solvation = 41.527659 kcal Electronic energy + Delta-G solvation = -20281.754003 eV Core-core repulsion = 17291.881239 eV Total energy + Delta-G solvation = -2989.872765 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.20985 -39.04041 -35.99998 -35.03791 -32.58085 -31.51232 -30.85781 -28.95730 -27.72947 -25.67353 -24.50111 -23.47360 -22.37947 -20.89976 -20.27209 -18.66968 -17.62871 -17.16153 -16.87521 -15.98299 -15.36241 -14.76442 -14.14642 -13.85542 -13.76867 -13.59004 -13.09600 -12.85436 -12.62805 -12.18775 -12.07109 -11.94024 -11.49745 -11.46444 -11.33609 -11.21864 -11.00435 -10.94815 -10.78897 -10.75358 -10.65370 -10.55574 -10.19331 -10.14136 -9.89862 -9.32381 -9.24298 -8.62026 -6.12692 -4.12539 1.55191 2.56288 3.27256 3.30380 3.35353 3.39044 3.80468 4.21349 4.38699 4.38799 4.54513 4.66624 5.10122 5.13284 5.16965 5.20770 5.27992 5.39068 5.41542 5.53696 5.63799 5.65855 5.71621 5.73767 5.81914 5.89140 5.92432 6.01933 6.09995 6.12072 6.20502 6.30952 6.34294 6.47948 6.52231 6.81189 7.01575 7.15831 7.62723 8.39716 8.55640 8.89415 9.48327 10.99766 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.032251 B = 0.004598 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.974394 B = 6087.814005 C = 6611.999273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.009 3.991 3 H 0.111 0.889 4 C -0.007 4.007 5 C -0.521 4.521 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.211 3.789 14 N -0.499 5.499 15 C 0.173 3.827 16 C 0.002 3.998 17 H 0.102 0.898 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.088 4.088 22 H 0.076 0.924 23 C -0.144 4.144 24 N -0.389 5.389 25 O 0.070 5.930 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.023 0.977 30 H 0.021 0.979 31 H 0.265 0.735 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 -4.703 19.929 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.011 4.011 3 H 0.129 0.871 4 C -0.046 4.046 5 C -0.558 4.558 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.701 3.299 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.191 1.191 13 C -0.008 4.008 14 N -0.232 5.232 15 C -0.099 4.099 16 C -0.019 4.019 17 H 0.120 0.880 18 C -0.153 4.153 19 C -0.160 4.160 20 C -0.155 4.155 21 C -0.108 4.108 22 H 0.094 0.906 23 C -0.201 4.201 24 N -0.100 5.100 25 O 0.014 5.986 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.070 -5.149 20.342 21.374 hybrid contribution 0.542 -0.756 -0.506 1.059 sum 4.612 -5.905 19.836 21.204 Atomic orbital electron populations 1.21797 0.92653 1.02558 1.02428 1.20102 0.96790 0.98828 0.85415 0.87137 1.19710 0.96619 0.96368 0.91856 1.20927 1.36453 1.09914 0.88535 0.90199 1.24934 0.95303 0.96866 0.95820 1.69888 1.46449 1.39089 0.98119 0.86862 0.80788 0.84328 0.77879 1.20004 1.21211 1.19150 1.29561 0.91815 0.81909 0.97553 1.71939 1.18184 1.29671 1.03374 1.25472 0.99886 0.85365 0.99205 1.20444 0.93353 1.01228 0.86829 0.87963 1.22575 0.97489 1.01440 0.93783 1.22333 0.95970 1.00278 0.97389 1.22218 0.99039 1.00363 0.93910 1.21736 0.97269 0.95776 0.95977 0.90556 1.22036 1.01613 0.97659 0.98777 1.74656 1.13129 1.23515 0.98651 1.85277 1.53997 1.30180 1.29146 0.89180 0.92402 0.93866 0.95824 0.96073 0.92527 0.91076 0.90666 0.91329 0.91313 0.91362 0.91564 0.93161 0.92902 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.99 37.16 0.33 -1.98 16 2 C 0.01 0.17 2.81 -91.77 -0.26 -0.09 16 3 H 0.11 2.10 8.14 -51.93 -0.42 1.68 16 4 C -0.01 -0.17 3.50 -27.88 -0.10 -0.26 16 5 C -0.52 -13.80 8.96 -34.44 -0.31 -14.11 16 6 H 0.08 2.22 7.30 -52.49 -0.38 1.84 16 7 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -26.56 13.96 55.43 0.77 -25.78 16 9 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 13 C 0.21 3.93 7.02 -13.06 -0.09 3.84 16 14 N -0.50 -9.15 11.55 -9.87 -0.11 -9.27 16 15 C 0.17 2.83 5.76 -156.37 -0.90 1.93 16 16 C 0.00 0.02 3.32 -90.12 -0.30 -0.28 16 17 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 18 C -0.11 -1.20 6.32 -24.73 -0.16 -1.36 16 19 C -0.12 -1.00 6.83 -25.07 -0.17 -1.17 16 20 C -0.12 -1.03 6.46 -25.61 -0.17 -1.19 16 21 C -0.09 -0.99 3.42 -89.51 -0.31 -1.30 16 22 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 23 C -0.14 -1.86 7.46 37.15 0.28 -1.59 16 24 N -0.39 -6.71 9.02 30.90 0.28 -6.43 16 25 O 0.07 1.29 11.31 18.10 0.20 1.49 16 26 H 0.09 1.62 6.95 -51.93 -0.36 1.26 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 30 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.88 7.89 -51.93 -0.41 0.47 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.59 7.67 -51.93 -0.40 0.19 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.79 6.50 -51.93 -0.34 0.45 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.93 7.24 -51.93 -0.38 0.56 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -29.14 318.42 -7.40 -36.54 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.43 Total: -2.25 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -2.24 Total: -15.62 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.94 Total: -41.48 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: 0.20 Total: 1.49 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.14 -7.40 -36.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385016747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.066 kcal (2) G-P(sol) polarization free energy of solvation -29.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds