Wall clock time and date at job start Mon Mar 30 2020 07:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 C 1.50699 * 109.47110 * 119.99564 * 2 1 3 14 14 N 1.31130 * 126.55343 * 240.00212 * 13 2 1 15 15 C 1.34494 * 105.61700 * 179.97438 * 14 13 2 16 16 C 1.50697 * 126.28929 * 179.97438 * 15 14 13 17 17 H 1.09007 * 110.43171 * 2.54668 * 16 15 14 18 18 C 1.54889 * 110.48495 * 125.22606 * 16 15 14 19 19 C 1.54897 * 102.74822 * 156.62250 * 18 16 15 20 20 C 1.54269 * 104.19326 * 322.05779 * 19 18 16 21 21 C 1.53877 * 106.59875 * 23.60942 * 20 19 18 22 22 H 1.09002 * 110.02706 * 119.28336 * 21 20 19 23 23 C 1.52993 * 110.07285 * 240.68947 * 21 20 19 24 24 N 1.29946 * 107.42064 * 0.02562 * 15 14 13 25 25 O 1.21298 * 110.25505 * 359.70344 * 24 15 14 26 26 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 27 27 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 29 29 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 30 30 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 31 31 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 32 32 H 1.09001 * 110.75621 * 274.93323 * 18 16 15 33 33 H 1.08992 * 110.75908 * 38.31033 * 18 16 15 34 34 H 1.08995 * 110.48415 * 203.38225 * 19 18 16 35 35 H 1.08998 * 110.59342 * 80.79084 * 19 18 16 36 36 H 1.08993 * 110.02845 * 264.32372 * 20 19 18 37 37 H 1.09003 * 110.06782 * 142.91561 * 20 19 18 38 38 H 1.09002 * 109.47431 * 177.19172 * 23 21 20 39 39 H 1.09000 * 109.47416 * 297.19273 * 23 21 20 40 40 H 1.09000 * 109.46769 * 57.19369 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7283 8 7 1.6458 0.2776 -4.7993 9 14 2.9637 -1.9884 -3.9026 10 1 2.0246 -3.1328 -4.0199 11 1 3.8126 -1.9183 -5.1190 12 1 3.8253 -2.1756 -2.7077 13 6 2.0324 -0.7103 1.2305 14 7 2.7892 -0.2006 2.1722 15 6 2.9809 -1.1930 3.0595 16 6 3.7881 -1.1105 4.3294 17 1 4.1757 -0.1013 4.4690 18 6 2.9298 -1.5376 5.5459 19 6 3.9966 -1.9760 6.5799 20 6 5.0750 -2.6838 5.7338 21 6 4.9424 -2.1335 4.3029 22 1 5.8690 -1.6433 4.0041 23 6 4.6140 -3.2692 3.3318 24 7 2.3432 -2.2364 2.6199 25 8 1.7870 -1.9785 1.5733 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6055 -1.7198 -1.2951 30 1 3.1264 -0.7994 -1.2055 31 1 1.8931 -0.0454 -5.6799 32 1 2.3489 -0.6961 5.9234 33 1 2.2787 -2.3720 5.2854 34 1 3.5649 -2.6673 7.3036 35 1 4.4183 -1.1082 7.0870 36 1 4.9049 -3.7604 5.7370 37 1 6.0662 -2.4613 6.1290 38 1 4.4732 -2.8619 2.3306 39 1 5.4350 -3.9861 3.3202 40 1 3.6999 -3.7687 3.6528 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385016747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:24 Heat of formation + Delta-G solvation = 24.546239 kcal Electronic energy + Delta-G solvation = -20282.490373 eV Core-core repulsion = 17291.881239 eV Total energy + Delta-G solvation = -2990.609134 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.58423 -39.93053 -37.60023 -36.41664 -34.52004 -32.79838 -31.92606 -29.96376 -29.51519 -26.66776 -26.01231 -24.79446 -23.96910 -22.02284 -21.33538 -19.86847 -19.12600 -18.99093 -18.21927 -16.93374 -16.49314 -16.34372 -15.94046 -15.32488 -14.83574 -14.66376 -14.58443 -14.04772 -13.95290 -13.68696 -13.31263 -13.20048 -13.00000 -12.87790 -12.70441 -12.58817 -12.14284 -12.05574 -11.99626 -11.88405 -11.82294 -11.73249 -11.61973 -11.55954 -11.36941 -11.34699 -10.76221 -10.67146 -8.28025 -6.31198 0.13655 1.22195 1.34920 1.37638 1.46660 1.84905 2.35127 2.59386 3.03748 3.07313 3.54292 3.61432 3.71402 4.03347 4.09908 4.18852 4.29874 4.32338 4.40926 4.47799 4.54537 4.56691 4.67914 4.77376 4.82716 4.87872 4.92225 4.94864 5.02730 5.06820 5.13894 5.16460 5.16618 5.24634 5.29447 5.34269 5.44503 5.47720 5.59648 6.25786 6.75138 7.16141 7.32580 8.87412 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.032251 B = 0.004598 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.974394 B = 6087.814005 C = 6611.999273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.016 3.984 3 H 0.109 0.891 4 C -0.003 4.003 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.017 3.983 8 N -0.942 5.942 9 Si 0.932 3.068 10 H -0.264 1.264 11 H -0.284 1.284 12 H -0.260 1.260 13 C 0.206 3.794 14 N -0.511 5.511 15 C 0.179 3.821 16 C -0.006 4.006 17 H 0.110 0.890 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.088 4.088 22 H 0.081 0.919 23 C -0.139 4.139 24 N -0.393 5.393 25 O 0.057 5.943 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.012 0.988 31 H 0.267 0.733 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.016 0.984 39 H 0.068 0.932 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.848 -5.733 22.447 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.004 4.004 3 H 0.127 0.873 4 C -0.041 4.041 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.181 4.181 8 N -0.582 5.582 9 Si 0.757 3.243 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.184 1.184 13 C -0.013 4.013 14 N -0.245 5.245 15 C -0.094 4.094 16 C -0.026 4.026 17 H 0.129 0.871 18 C -0.150 4.150 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.107 4.107 22 H 0.099 0.901 23 C -0.197 4.197 24 N -0.106 5.106 25 O 0.004 5.996 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.035 0.965 39 H 0.086 0.914 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.068 -6.188 22.864 24.223 hybrid contribution 0.222 -0.384 -1.241 1.317 sum 5.290 -6.572 21.624 23.211 Atomic orbital electron populations 1.21733 0.91056 1.03090 1.02916 1.19884 0.98098 0.98208 0.84242 0.87329 1.19580 0.96063 0.96386 0.92054 1.21190 1.35143 1.09226 0.89979 0.92547 1.25728 0.96564 1.00109 0.95664 1.70012 1.48388 1.41110 0.98726 0.85924 0.79662 0.80710 0.77988 1.18918 1.20939 1.18414 1.29309 0.92256 0.82151 0.97624 1.71949 1.18180 1.30539 1.03855 1.26174 0.99158 0.84359 0.99697 1.20783 0.93812 1.02267 0.85762 0.87146 1.22573 0.97812 1.01136 0.93521 1.22331 0.94884 1.01127 0.96821 1.22201 1.00347 1.00401 0.92031 1.21793 0.96749 0.94826 0.97341 0.90069 1.21984 1.01862 0.98517 0.97294 1.74664 1.13642 1.23811 0.98449 1.85265 1.54492 1.30037 1.29777 0.90609 0.91850 0.91404 0.95352 0.96918 0.92414 0.90412 0.92171 0.89980 0.89727 0.91166 0.89650 0.96490 0.91352 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 8.99 71.98 0.65 -3.68 16 2 C 0.02 0.61 2.81 -11.54 -0.03 0.58 16 3 H 0.11 4.13 8.14 -2.39 -0.02 4.12 16 4 C 0.00 -0.11 3.50 29.85 0.10 -0.01 16 5 C -0.52 -27.85 8.96 25.60 0.23 -27.62 16 6 H 0.06 3.23 7.30 -2.91 -0.02 3.21 16 7 C 0.02 0.97 5.47 84.66 0.46 1.44 16 8 N -0.94 -56.83 13.96 21.45 0.30 -56.53 16 9 Si 0.93 43.63 27.47 68.60 1.88 45.52 16 10 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.26 -11.76 6.54 99.48 0.65 -11.11 16 13 C 0.21 7.58 7.02 88.38 0.62 8.20 16 14 N -0.51 -18.39 11.55 -303.20 -3.50 -21.90 16 15 C 0.18 5.67 5.76 138.46 0.80 6.47 16 16 C -0.01 -0.14 3.32 -10.47 -0.03 -0.18 16 17 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 18 C -0.11 -2.09 6.32 31.89 0.20 -1.89 16 19 C -0.11 -1.47 6.83 31.67 0.22 -1.25 16 20 C -0.11 -1.58 6.46 31.32 0.20 -1.38 16 21 C -0.09 -1.78 3.42 -10.07 -0.03 -1.81 16 22 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 23 C -0.14 -3.44 7.46 71.98 0.54 -2.91 16 24 N -0.39 -13.33 9.02 -60.32 -0.54 -13.88 16 25 O 0.06 2.07 11.31 74.84 0.85 2.92 16 26 H 0.08 2.74 6.95 -2.39 -0.02 2.72 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 30 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 31 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.31 7.89 -2.39 -0.02 1.29 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 0.99 7.67 -2.39 -0.02 0.97 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.02 0.51 6.50 -2.39 -0.02 0.49 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.58 7.24 -2.39 -0.02 1.56 16 Total: -1.00 -62.74 318.42 3.86 -58.88 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.96 Total: 9.03 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 3.92 Total: -24.05 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -3.75 Total: -92.30 kcal Atomic # 8 Polarization: 2.07 SS G_CDS: 0.85 Total: 2.92 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.52 kcal Total: -62.74 3.86 -58.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385016747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.431 kcal (2) G-P(sol) polarization free energy of solvation -62.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds