Wall clock time and date at job start Mon Mar 30 2020 07:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.40024 * 110.99872 * 236.04370 * 2 1 3 5 5 C 1.38672 * 120.08996 * 60.00581 * 4 2 1 6 6 C 1.38262 * 119.99489 * 180.02562 * 5 4 2 7 7 C 1.38258 * 120.19690 * 359.97438 * 6 5 4 8 8 C 1.38276 * 120.19184 * 0.02562 * 7 6 5 9 9 C 1.38664 * 119.99609 * 359.68035 * 8 7 6 10 10 N 1.40017 * 120.09708 * 180.30305 * 9 8 7 11 11 C 1.46494 * 119.99778 * 0.28949 * 10 9 8 12 12 C 1.53004 * 109.47351 * 180.02562 * 11 10 9 13 13 O 1.42899 * 109.47230 * 64.99678 * 12 11 10 14 14 C 1.42895 * 114.00503 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47566 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99707 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00013 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99978 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00102 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.46999 * 90.00122 * 19 17 15 21 21 H 1.48503 * 109.47093 * 209.99798 * 19 17 15 22 22 H 1.48493 * 109.47132 * 330.00052 * 19 17 15 23 23 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 24 24 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 25 25 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 26 26 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 27 27 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 28 28 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 29 29 H 1.07996 * 119.99871 * 0.02562 * 5 4 2 30 30 H 1.08003 * 119.90533 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.90854 * 180.02562 * 7 6 5 32 32 H 1.07998 * 119.99968 * 179.97438 * 8 7 6 33 33 H 0.97000 * 120.00044 * 180.29823 * 10 9 8 34 34 H 1.09001 * 109.47721 * 299.99925 * 11 10 9 35 35 H 1.08998 * 109.47148 * 60.00888 * 11 10 9 36 36 H 1.09001 * 109.47560 * 185.00254 * 12 11 10 37 37 H 1.09008 * 109.46904 * 305.00645 * 12 11 10 38 38 H 1.09008 * 109.46969 * 300.00862 * 14 13 12 39 39 H 1.09001 * 109.47262 * 60.00162 * 14 13 12 40 40 H 0.97001 * 120.00390 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9708 -0.7302 -1.0843 5 6 1.6599 -0.3508 -2.3814 6 6 2.1560 -1.0736 -3.4506 7 6 2.9628 -2.1747 -3.2312 8 6 3.2777 -2.5600 -1.9411 9 6 2.7896 -1.8374 -0.8631 10 7 3.1124 -2.2219 0.4440 11 6 3.9722 -3.3854 0.6739 12 6 4.1663 -3.5869 2.1782 13 8 2.9133 -3.9180 2.7800 14 6 2.9838 -4.1275 4.1918 15 6 1.6136 -4.4694 4.7180 16 1 0.7731 -4.5218 4.0419 17 6 1.4333 -4.7162 6.0624 18 7 0.2378 -5.0150 6.5216 19 14 2.8873 -4.6261 7.2318 20 1 3.0154 -3.2429 7.7568 21 1 2.6732 -5.5663 8.3612 22 1 4.1291 -4.9975 6.5072 23 1 -0.3634 -1.0252 0.0708 24 1 -0.3633 0.4513 -0.9233 25 1 -0.3633 0.5740 0.8525 26 1 1.5899 1.9163 0.8525 27 1 3.0829 1.3431 0.0709 28 1 1.7045 1.8723 -0.9233 29 1 1.0304 0.5090 -2.5563 30 1 1.9127 -0.7771 -4.4603 31 1 3.3481 -2.7357 -4.0698 32 1 3.9078 -3.4209 -1.7733 33 1 2.7666 -1.7179 1.1972 34 1 3.5052 -4.2726 0.2462 35 1 4.9405 -3.2207 0.2013 36 1 4.8761 -4.3966 2.3478 37 1 4.5506 -2.6680 2.6212 38 1 3.6692 -4.9482 4.4035 39 1 3.3433 -3.2197 4.6763 40 1 0.1108 -5.1883 7.4675 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385210798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:28 Heat of formation + Delta-G solvation = -29.119100 kcal Electronic energy + Delta-G solvation = -19690.561593 eV Core-core repulsion = 16697.625355 eV Total energy + Delta-G solvation = -2992.936238 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.88960 -38.92844 -37.46085 -36.25205 -34.83012 -31.80619 -30.81537 -29.93410 -28.47790 -28.15513 -25.45046 -24.13349 -23.81419 -22.16728 -21.63646 -19.09645 -18.47753 -17.52662 -17.32129 -17.08937 -16.46170 -16.18209 -15.94413 -15.48463 -15.13275 -14.95760 -14.86803 -14.56758 -14.33775 -14.02688 -13.55890 -13.33564 -13.11537 -13.08737 -12.83935 -12.62832 -12.62239 -12.42910 -12.19347 -11.87226 -11.83218 -11.39387 -10.94780 -10.90198 -10.39609 -9.63953 -9.41380 -8.37950 -8.17264 -6.46279 0.47494 0.79186 1.32957 1.36247 1.46944 2.28763 2.59852 2.94836 2.96497 3.03224 3.04873 4.02946 4.07165 4.22257 4.23832 4.29797 4.38937 4.46919 4.48811 4.53714 4.60455 4.61759 4.67971 4.76090 4.82816 4.89370 4.96039 4.96986 4.99264 5.02516 5.38829 5.42478 5.58264 5.74926 5.91443 5.99455 6.00407 6.24370 6.57822 6.68817 6.74455 6.92568 7.18219 8.79455 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.024170 B = 0.004201 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.173784 B = 6664.197119 C = 7244.680783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.521 5.521 3 C 0.034 3.966 4 C -0.014 4.014 5 C -0.106 4.106 6 C -0.182 4.182 7 C -0.074 4.074 8 C -0.210 4.210 9 C 0.222 3.778 10 N -0.736 5.736 11 C 0.135 3.865 12 C 0.040 3.960 13 O -0.404 6.404 14 C 0.180 3.820 15 C -0.546 4.546 16 H 0.026 0.974 17 C 0.013 3.987 18 N -0.943 5.943 19 Si 0.957 3.043 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.243 1.243 23 H 0.048 0.952 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.145 0.855 32 H 0.132 0.868 33 H 0.404 0.596 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.494 10.613 -17.814 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.243 5.243 3 C -0.112 4.112 4 C -0.112 4.112 5 C -0.126 4.126 6 C -0.203 4.203 7 C -0.092 4.092 8 C -0.234 4.234 9 C 0.116 3.884 10 N -0.364 5.364 11 C 0.010 3.990 12 C -0.037 4.037 13 O -0.324 6.324 14 C 0.105 3.895 15 C -0.584 4.584 16 H 0.044 0.956 17 C -0.185 4.185 18 N -0.583 5.583 19 Si 0.778 3.222 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.166 1.166 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.143 0.857 30 H 0.156 0.844 31 H 0.163 0.837 32 H 0.150 0.850 33 H 0.239 0.761 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.504 10.151 -17.261 22.166 hybrid contribution -0.374 0.404 0.547 0.776 sum 9.130 10.554 -16.715 21.775 Atomic orbital electron populations 1.22384 0.85967 1.01684 1.01314 1.59358 1.08673 1.14780 1.41468 1.22417 1.00451 0.87102 1.01267 1.18443 1.04516 0.98363 0.89897 1.21458 0.99221 0.99709 0.92251 1.21027 1.02241 0.97977 0.99017 1.21213 0.95862 0.95929 0.96235 1.20836 1.07481 1.03148 0.91904 1.18044 0.92677 0.92098 0.85591 1.44798 1.54736 1.32051 1.04786 1.21415 0.95301 0.88571 0.93667 1.22878 0.87136 1.00335 0.93383 1.87920 1.31202 1.90718 1.22589 1.20312 0.95777 0.94719 0.78710 1.21157 0.94345 1.48892 0.93986 0.95553 1.25857 0.99584 0.93431 0.99618 1.70039 1.24433 1.48172 1.15629 0.85585 0.79189 0.79323 0.78080 1.18454 1.19892 1.16634 0.93296 0.93995 0.90451 0.90442 0.91927 0.94369 0.85671 0.84435 0.83717 0.85018 0.76101 0.92469 0.88306 0.90672 0.92646 0.96727 0.97097 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.35 127.69 1.19 2.04 16 2 N -0.52 -14.09 4.16 -744.38 -3.10 -17.19 16 3 C 0.03 0.74 9.39 127.69 1.20 1.93 16 4 C -0.01 -0.39 4.76 38.23 0.18 -0.20 16 5 C -0.11 -2.44 8.58 22.38 0.19 -2.25 16 6 C -0.18 -3.70 10.04 22.28 0.22 -3.47 16 7 C -0.07 -1.51 10.04 22.28 0.22 -1.29 16 8 C -0.21 -5.14 9.31 22.38 0.21 -4.93 16 9 C 0.22 6.42 6.67 38.23 0.26 6.67 16 10 N -0.74 -22.75 5.68 -338.85 -1.92 -24.68 16 11 C 0.13 3.69 5.30 86.38 0.46 4.14 16 12 C 0.04 1.26 6.07 71.98 0.44 1.70 16 13 O -0.40 -18.55 10.27 -148.98 -1.53 -20.08 16 14 C 0.18 8.99 4.76 71.24 0.34 9.33 16 15 C -0.55 -33.55 9.99 25.60 0.26 -33.29 16 16 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 17 C 0.01 0.77 5.47 84.65 0.46 1.23 16 18 N -0.94 -59.84 13.96 21.45 0.30 -59.55 16 19 Si 0.96 43.23 27.47 68.60 1.88 45.11 16 20 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 23 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.04 0.89 7.13 -2.39 -0.02 0.87 16 25 H 0.08 1.79 8.12 -2.38 -0.02 1.77 16 26 H 0.08 1.50 8.12 -2.38 -0.02 1.48 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 0.71 7.35 -2.39 -0.02 0.69 16 29 H 0.13 2.48 7.02 -2.91 -0.02 2.46 16 30 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.13 2.84 6.74 -2.91 -0.02 2.82 16 33 H 0.40 14.07 7.76 -92.71 -0.72 13.35 16 34 H 0.06 1.65 7.94 -2.39 -0.02 1.63 16 35 H 0.10 2.04 7.97 -2.39 -0.02 2.02 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.02 0.71 7.20 -2.38 -0.02 0.69 16 39 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 40 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -71.50 329.97 1.51 -69.99 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.24 Total: 24.77 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 5.63 Total: -18.39 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -4.72 Total: -101.41 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -1.53 Total: -20.08 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.88 Total: 45.11 kcal Total: -71.50 1.51 -69.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385210798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.875 kcal (2) G-P(sol) polarization free energy of solvation -71.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds