Wall clock time and date at job start Mon Mar 30 2020 07:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46489 * 120.00319 * 2 1 4 4 C 1.39671 * 119.99777 * 179.72269 * 2 1 3 5 5 C 1.38986 * 120.03756 * 174.00232 * 4 2 1 6 6 C 1.38133 * 120.07443 * 179.76661 * 5 4 2 7 7 C 1.38176 * 120.14747 * 0.51317 * 6 5 4 8 8 C 1.38952 * 120.07234 * 359.74304 * 7 6 5 9 9 N 1.39670 * 120.03871 * 180.02562 * 8 7 6 10 10 C 1.46501 * 119.99774 * 359.96954 * 9 8 7 11 11 C 1.53000 * 109.46972 * 180.02562 * 10 9 8 12 12 O 1.42902 * 109.47141 * 65.00265 * 11 10 9 13 13 C 1.42893 * 114.00373 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47397 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99949 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99740 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00528 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99345 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47473 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47195 * 120.00052 * 18 16 14 21 21 H 1.48503 * 109.46999 * 239.99933 * 18 16 14 22 22 C 1.38758 * 120.03706 * 354.27926 * 4 2 1 23 23 H 1.08993 * 109.47295 * 185.33070 * 1 2 3 24 24 H 1.08996 * 109.46926 * 305.33411 * 1 2 3 25 25 H 1.09004 * 109.46982 * 65.32963 * 1 2 3 26 26 H 1.09006 * 109.46968 * 269.72506 * 3 2 1 27 27 H 1.09003 * 109.47261 * 29.72318 * 3 2 1 28 28 H 1.09001 * 109.47795 * 149.72206 * 3 2 1 29 29 H 1.08005 * 119.96616 * 0.02562 * 5 4 2 30 30 H 1.08002 * 119.93009 * 180.25261 * 6 5 4 31 31 H 1.08001 * 119.96649 * 179.76718 * 7 6 5 32 32 H 0.96997 * 119.99780 * 179.97438 * 9 8 7 33 33 H 1.08996 * 109.47295 * 300.00521 * 10 9 8 34 34 H 1.09004 * 109.47067 * 60.00663 * 10 9 8 35 35 H 1.08996 * 109.47488 * 185.00326 * 11 10 9 36 36 H 1.09000 * 109.47627 * 305.00487 * 11 10 9 37 37 H 1.09001 * 109.47464 * 300.00376 * 13 12 11 38 38 H 1.08998 * 109.47306 * 59.99982 * 13 12 11 39 39 H 0.96993 * 120.00129 * 180.02562 * 17 16 14 40 40 H 1.08005 * 120.07142 * 359.95654 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1634 -1.2096 0.0059 5 6 3.5475 -1.2145 -0.1198 6 6 4.2393 -2.4100 -0.1093 7 6 3.5575 -3.6053 0.0155 8 6 2.1732 -3.6079 0.1362 9 7 1.4847 -4.8165 0.2629 10 6 2.2220 -6.0824 0.2678 11 6 1.2384 -7.2448 0.4171 12 8 0.3929 -7.3042 -0.7335 13 6 -0.5676 -8.3615 -0.6951 14 6 -1.3998 -8.3301 -1.9511 15 1 -1.2134 -7.5782 -2.7037 16 6 -2.3990 -9.2613 -2.1395 17 7 -2.6256 -10.1771 -1.2233 18 14 -3.4299 -9.2228 -3.6967 19 1 -2.9780 -8.1037 -4.5621 20 1 -3.2737 -10.5070 -4.4257 21 1 -4.8581 -9.0265 -3.3402 22 6 1.4755 -2.4081 0.1314 23 1 -0.3633 -1.0231 0.0955 24 1 -0.3633 0.5943 0.8383 25 1 -0.3633 0.4290 -0.9339 26 1 2.3835 1.5808 -1.0277 27 1 1.6064 2.0295 0.5095 28 1 3.1478 1.1396 0.5181 29 1 4.0832 -0.2822 -0.2217 30 1 5.3153 -2.4108 -0.2030 31 1 4.1010 -4.5386 0.0196 32 1 0.5184 -4.8176 0.3475 33 1 2.7691 -6.1879 -0.6690 34 1 2.9240 -6.0908 1.1016 35 1 1.7916 -8.1793 0.5101 36 1 0.6291 -7.0932 1.3081 37 1 -0.0515 -9.3190 -0.6254 38 1 -1.2143 -8.2334 0.1729 39 1 -3.3283 -10.8324 -1.3560 40 1 0.3995 -2.4073 0.2254 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385270911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:33 Heat of formation + Delta-G solvation = -10.687249 kcal Electronic energy + Delta-G solvation = -19089.152477 eV Core-core repulsion = 16097.015504 eV Total energy + Delta-G solvation = -2992.136973 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.58778 -37.46425 -36.43351 -34.50267 -32.74114 -30.87794 -29.69265 -28.69492 -27.36942 -26.43728 -24.83224 -22.51215 -22.14295 -21.76189 -20.02639 -17.70445 -16.58146 -16.10151 -15.78019 -15.61992 -15.19516 -15.13956 -14.92007 -14.51573 -14.06630 -13.65392 -13.49925 -13.19585 -12.97778 -12.70285 -12.40725 -12.24241 -11.98052 -11.86930 -11.54269 -11.14117 -10.85480 -10.84631 -10.81125 -10.63424 -10.14159 -10.06974 -9.41921 -9.14477 -8.91306 -8.25217 -7.46058 -7.01226 -6.15233 -4.17118 1.77307 1.97314 3.08741 3.26803 3.33496 3.40184 3.77242 4.16948 4.31050 4.77962 4.86800 4.94486 5.16353 5.21510 5.23607 5.33243 5.37582 5.46577 5.47742 5.54815 5.59864 5.65726 5.77925 5.84646 5.94801 5.98648 6.02494 6.20105 6.41215 6.57986 6.80453 6.82820 7.02120 7.29580 7.35564 7.51274 7.68362 7.75457 8.06065 8.09487 8.49284 8.96205 9.48123 10.96291 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.022576 B = 0.003468 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.931092 B = 8071.534565 C = 8923.498514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.641 5.641 3 C 0.098 3.902 4 C 0.253 3.747 5 C -0.260 4.260 6 C -0.030 4.030 7 C -0.253 4.253 8 C 0.266 3.734 9 N -0.733 5.733 10 C 0.130 3.870 11 C 0.049 3.951 12 O -0.393 6.393 13 C 0.195 3.805 14 C -0.515 4.515 15 H 0.067 0.933 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.278 4.278 23 H 0.080 0.920 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.404 0.596 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.006 0.994 38 H 0.005 0.995 39 H 0.264 0.736 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.629 18.601 5.235 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.354 5.354 3 C -0.045 4.045 4 C 0.152 3.848 5 C -0.284 4.284 6 C -0.050 4.050 7 C -0.277 4.277 8 C 0.160 3.840 9 N -0.361 5.361 10 C 0.006 3.994 11 C -0.029 4.029 12 O -0.313 6.313 13 C 0.120 3.880 14 C -0.553 4.553 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.735 3.265 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.305 4.305 23 H 0.099 0.901 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.240 0.760 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.073 0.927 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.540 18.534 5.114 21.926 hybrid contribution -1.071 -0.347 -0.487 1.227 sum 9.469 18.187 4.627 21.020 Atomic orbital electron populations 1.21679 0.79783 1.03323 1.00565 1.46256 1.04877 1.03192 1.81039 1.21536 0.97102 0.85019 1.00866 1.17458 0.90927 0.84833 0.91609 1.20313 0.92046 0.98180 1.17844 1.20547 0.98643 0.91526 0.94271 1.20414 0.92298 0.98354 1.16650 1.17549 0.91246 0.85425 0.89811 1.44747 1.09199 1.02485 1.79674 1.21388 0.94253 0.82499 1.01260 1.22483 0.93138 0.96513 0.90756 1.87902 1.49122 1.55368 1.38891 1.20225 0.85801 0.84360 0.97573 1.21089 1.15742 1.14724 1.03776 0.91482 1.24954 0.97172 0.95015 0.97370 1.69962 1.32408 1.17158 1.34226 0.86280 0.79656 0.78101 0.82470 1.19451 1.20793 1.20816 1.20006 0.99281 0.90082 1.21136 0.90106 0.93000 0.93241 0.93746 0.91995 0.91400 0.86959 0.86682 0.86653 0.76040 0.91593 0.91619 0.92890 0.93919 0.97632 0.97693 0.92660 0.86205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.62 59.85 0.64 1.48 16 2 N -0.64 -7.14 3.41 -187.58 -0.64 -7.78 16 3 C 0.10 0.80 10.08 59.84 0.60 1.41 16 4 C 0.25 3.38 6.53 -83.82 -0.55 2.83 16 5 C -0.26 -3.25 9.15 -39.34 -0.36 -3.61 16 6 C -0.03 -0.38 10.03 -39.64 -0.40 -0.78 16 7 C -0.25 -3.51 9.31 -39.34 -0.37 -3.88 16 8 C 0.27 4.00 6.65 -83.82 -0.56 3.44 16 9 N -0.73 -11.33 5.68 -58.65 -0.33 -11.67 16 10 C 0.13 1.94 5.30 -4.04 -0.02 1.92 16 11 C 0.05 0.87 6.07 37.16 0.23 1.09 16 12 O -0.39 -9.21 10.27 -35.23 -0.36 -9.57 16 13 C 0.19 5.26 5.69 36.01 0.20 5.46 16 14 C -0.52 -15.10 9.43 -34.44 -0.32 -15.43 16 15 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 18 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 C -0.28 -3.98 9.16 -39.18 -0.36 -4.34 16 23 H 0.08 0.81 5.31 -51.93 -0.28 0.53 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.40 8.07 -51.93 -0.42 -0.02 16 28 H 0.07 0.52 6.48 -51.93 -0.34 0.19 16 29 H 0.11 1.18 6.32 -52.48 -0.33 0.85 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.12 1.48 6.72 -52.49 -0.35 1.13 16 32 H 0.40 6.43 8.48 -40.82 -0.35 6.09 16 33 H 0.07 1.02 7.95 -51.93 -0.41 0.60 16 34 H 0.07 0.82 7.95 -51.93 -0.41 0.41 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.12 1.62 5.74 -52.48 -0.30 1.32 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -32.01 331.18 -8.10 -40.11 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.12 Total: 2.01 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -1.36 Total: -8.88 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.24 Total: -45.45 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.36 Total: -9.57 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.01 -8.10 -40.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385270911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.424 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds