Wall clock time and date at job start Mon Mar 30 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37879 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47269 * 179.97438 * 12 11 10 14 14 C 1.35913 * 117.00221 * 179.97438 * 13 12 11 15 15 C 1.39136 * 120.47087 * 179.97438 * 14 13 12 16 16 C 1.38544 * 118.37240 * 180.02562 * 15 14 13 17 17 C 1.38252 * 119.21956 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.55787 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.46822 * 125.00432 * 18 17 16 20 20 N 1.46902 * 109.47080 * 180.02562 * 19 18 17 21 21 N 1.31845 * 120.88765 * 0.02562 * 17 16 15 22 22 C 1.31851 * 121.78165 * 359.70378 * 21 17 16 23 23 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 25 25 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 26 26 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 27 27 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 28 28 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 29 29 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 30 30 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 31 31 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 32 32 H 1.08001 * 120.81872 * 0.03006 * 15 14 13 33 33 H 1.07995 * 120.39044 * 179.97438 * 16 15 14 34 34 H 1.08995 * 109.47360 * 245.00665 * 18 17 16 35 35 H 1.09004 * 109.46702 * 5.01139 * 18 17 16 36 36 H 1.09004 * 109.47146 * 300.00477 * 19 18 17 37 37 H 1.08993 * 109.47387 * 60.00319 * 19 18 17 38 38 H 1.00906 * 111.00065 * 180.02562 * 20 19 18 39 39 H 1.00899 * 110.99887 * 303.95228 * 20 19 18 40 40 H 1.07995 * 119.65800 * 180.29115 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4742 -6.1501 -0.0005 13 8 1.7597 -7.3876 -0.0005 14 6 2.4999 -8.5275 -0.0005 15 6 1.8784 -9.7723 0.0000 16 6 2.6750 -10.9059 0.0005 17 6 4.0502 -10.7643 0.0000 18 6 4.9240 -11.9922 -0.0001 19 6 5.8933 -11.9282 -1.1820 20 7 6.7447 -13.1254 -1.1825 21 7 4.6077 -9.5695 -0.0006 22 6 3.8856 -8.4663 -0.0064 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6245 -2.5571 0.8896 26 1 2.8717 -3.6045 0.8895 27 1 2.8718 -3.6044 -0.8905 28 1 0.8531 -5.0451 0.8886 29 1 0.8537 -5.0446 -0.8913 30 1 3.1015 -6.0923 -0.8901 31 1 3.1003 -6.0924 0.8899 32 1 0.8014 -9.8531 -0.0001 33 1 2.2269 -11.8885 0.0014 34 1 5.4887 -12.0363 0.9311 35 1 4.3004 -12.8818 -0.0894 36 1 5.3285 -11.8841 -2.1132 37 1 6.5169 -11.0387 -1.0929 38 1 7.3946 -13.1068 -1.9541 39 1 7.2302 -13.2242 -0.3035 40 1 4.3781 -7.5053 -0.0114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385299898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:03 Heat of formation + Delta-G solvation = -34.358897 kcal Electronic energy + Delta-G solvation = -18488.902104 eV Core-core repulsion = 15495.738651 eV Total energy + Delta-G solvation = -2993.163453 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.82676 -38.56277 -35.73753 -34.82598 -32.75730 -32.33830 -31.65892 -29.07437 -27.64482 -25.38860 -24.02899 -23.12303 -21.64734 -21.49739 -20.20201 -18.15222 -17.02987 -16.67616 -16.28303 -16.21926 -15.65376 -14.93060 -14.84079 -14.53069 -14.33262 -14.09788 -13.81688 -13.22921 -13.12615 -12.53581 -12.23580 -12.10333 -11.92666 -11.75002 -11.55072 -11.48138 -10.96652 -10.64468 -10.59496 -10.53036 -9.88042 -9.74861 -9.61284 -9.39832 -9.11869 -9.06792 -8.44939 -8.36914 -6.02012 -4.04860 0.92150 1.09728 3.07288 3.31801 3.36328 3.38683 3.54351 4.01408 4.23353 4.44063 4.51744 4.65810 4.72938 4.85049 5.01761 5.09609 5.13800 5.17205 5.32841 5.33647 5.39579 5.50393 5.61607 5.75123 5.79841 5.92643 5.94423 5.98246 6.31881 6.37115 6.64272 6.71498 6.79154 7.01793 7.02703 7.23650 7.64144 7.77472 7.77778 7.97454 8.39168 9.01956 9.59238 11.09241 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.042429 B = 0.002475 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.766145 B =11311.424741 C =11867.779164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.107 4.107 11 C -0.116 4.116 12 C 0.056 3.944 13 O -0.308 6.308 14 C 0.086 3.914 15 C -0.112 4.112 16 C -0.126 4.126 17 C 0.080 3.920 18 C -0.059 4.059 19 C 0.067 3.933 20 N -0.855 5.855 21 N -0.447 5.447 22 C 0.019 3.981 23 H 0.261 0.739 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.040 0.960 38 H 0.343 0.657 39 H 0.340 0.660 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.483 -24.459 -0.498 25.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.019 4.019 13 O -0.220 6.220 14 C 0.038 3.962 15 C -0.138 4.138 16 C -0.146 4.146 17 C -0.059 4.059 18 C -0.097 4.097 19 C -0.064 4.064 20 N -0.384 5.384 21 N -0.157 5.157 22 C -0.140 4.140 23 H 0.071 0.929 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.319 -24.613 -0.598 25.988 hybrid contribution 0.436 1.776 0.141 1.834 sum 8.754 -22.837 -0.456 24.462 Atomic orbital electron populations 1.69955 1.06055 1.26755 1.50649 1.25038 0.94875 0.99301 0.95308 0.86644 0.79570 0.83082 0.78615 1.20233 1.21272 1.20239 1.21210 0.92996 0.91080 1.50848 0.92725 1.19082 0.93938 0.91083 0.97424 1.21595 0.99297 0.93012 1.00602 1.21703 0.97985 0.92393 1.03324 1.23181 0.96260 0.81126 1.01304 1.86134 1.35687 1.12657 1.87554 1.20144 0.91628 0.87942 0.96524 1.20970 1.01326 0.89432 1.02109 1.21812 0.93827 0.99065 0.99895 1.21001 0.91780 0.92976 1.00115 1.20370 0.96913 0.93328 0.99099 1.21696 0.95179 0.91094 0.98429 1.58758 1.29169 1.41858 1.08597 1.67288 1.40448 0.97895 1.10020 1.22962 0.89822 0.97966 1.03209 0.92911 0.96456 0.96462 0.93063 0.93070 0.91222 0.91214 0.91883 0.91884 0.83934 0.84228 0.90519 0.89709 0.91223 0.94172 0.84526 0.84828 0.82261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -2.11 5.15 -26.73 -0.14 -2.25 16 11 C -0.12 -1.92 5.58 -26.73 -0.15 -2.07 16 12 C 0.06 0.76 4.75 37.16 0.18 0.94 16 13 O -0.31 -4.38 10.15 -19.47 -0.20 -4.58 16 14 C 0.09 1.10 6.71 -39.08 -0.26 0.84 16 15 C -0.11 -1.21 10.13 -39.14 -0.40 -1.61 16 16 C -0.13 -1.19 9.70 -39.46 -0.38 -1.57 16 17 C 0.08 0.84 6.18 -82.58 -0.51 0.33 16 18 C -0.06 -0.47 5.87 -27.88 -0.16 -0.64 16 19 C 0.07 0.55 6.64 -3.82 -0.03 0.52 16 20 N -0.85 -5.71 9.62 -10.37 -0.10 -5.81 16 21 N -0.45 -5.53 9.87 -9.35 -0.09 -5.62 16 22 C 0.02 0.23 10.22 -17.37 -0.18 0.06 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.79 7.66 -51.93 -0.40 0.40 16 31 H 0.06 0.80 7.69 -51.93 -0.40 0.40 16 32 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.14 0.90 7.94 -52.49 -0.42 0.48 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.58 7.87 -51.93 -0.41 0.18 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.37 7.94 -51.93 -0.41 -0.04 16 38 H 0.34 1.84 9.08 -39.29 -0.36 1.49 16 39 H 0.34 1.85 8.99 -39.29 -0.35 1.50 16 40 H 0.16 1.80 6.32 -52.49 -0.33 1.47 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -31.36 337.02 -8.60 -39.96 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.42 Total: -0.87 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.58 Total: -18.58 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.54 Total: -37.59 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.20 Total: -4.58 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.36 -8.60 -39.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385299898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.600 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds