Wall clock time and date at job start Mon Mar 30 2020 06:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47016 * 2 1 4 4 N 1.46501 * 109.46839 * 179.97438 * 3 2 1 5 5 C 1.36881 * 126.39792 * 264.97376 * 4 3 2 6 6 C 1.34669 * 106.81618 * 180.02562 * 5 4 3 7 7 N 1.34127 * 108.02235 * 359.77738 * 6 5 4 8 8 C 1.30497 * 109.25299 * 0.37384 * 7 6 5 9 9 C 1.50706 * 125.65037 * 179.88983 * 8 7 6 10 10 H 1.08988 * 110.55323 * 197.56944 * 9 8 7 11 11 C 1.55003 * 110.61328 * 74.68747 * 9 8 7 12 12 C 1.54813 * 102.08804 * 204.31851 * 11 9 8 13 13 C 1.54093 * 104.19013 * 20.88666 * 12 11 9 14 14 C 1.52997 * 109.88077 * 121.60382 * 13 12 11 15 15 C 1.50699 * 109.87715 * 242.60442 * 13 12 11 16 16 H 1.07997 * 119.99974 * 334.35015 * 15 13 12 17 17 C 1.37879 * 120.00112 * 154.35343 * 15 13 12 18 18 N 1.31520 * 120.00200 * 185.45566 * 17 15 13 19 19 Si 1.86807 * 120.00023 * 5.46020 * 17 15 13 20 20 H 1.48497 * 109.46782 * 265.32993 * 19 17 15 21 21 H 1.48496 * 109.46954 * 25.32693 * 19 17 15 22 22 H 1.48496 * 109.47413 * 145.32938 * 19 17 15 23 23 O 1.43747 * 107.42079 * 2.10151 * 13 12 11 24 24 H 1.09001 * 109.47085 * 300.00267 * 1 2 3 25 25 H 1.09002 * 109.47019 * 59.99880 * 1 2 3 26 26 H 1.08994 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47085 * 239.99733 * 2 1 3 28 28 H 1.09006 * 109.46739 * 119.99709 * 2 1 3 29 29 H 1.09001 * 109.47411 * 59.99933 * 3 2 1 30 30 H 1.08993 * 109.47115 * 299.99788 * 3 2 1 31 31 H 1.08002 * 126.59398 * 359.97438 * 5 4 3 32 32 H 1.08005 * 125.99116 * 180.02562 * 6 5 4 33 33 H 1.09002 * 110.90394 * 86.12626 * 11 9 8 34 34 H 1.08993 * 110.90948 * 322.51604 * 11 9 8 35 35 H 1.08998 * 110.48879 * 262.20450 * 12 11 9 36 36 H 1.08998 * 110.59704 * 139.62120 * 12 11 9 37 37 H 1.09000 * 109.47561 * 175.29042 * 14 13 12 38 38 H 1.09007 * 109.47115 * 295.28375 * 14 13 12 39 39 H 1.08995 * 109.47357 * 55.28174 * 14 13 12 40 40 H 0.97001 * 119.99536 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3168 1.5391 1.0985 6 6 5.5858 1.5000 0.6494 7 7 5.5498 1.3778 -0.6858 8 6 4.3068 1.3476 -1.0819 9 6 3.8428 1.2213 -2.5101 10 1 2.8007 1.5269 -2.6024 11 6 4.0332 -0.2302 -3.0194 12 6 4.1282 -0.0265 -4.5512 13 6 4.5227 1.4544 -4.7115 14 6 5.8394 1.5616 -5.4833 15 6 3.4366 2.1973 -5.4461 16 1 2.7778 1.6661 -6.1171 17 6 3.2839 3.5551 -5.2616 18 7 2.2717 4.1847 -5.8174 19 14 4.5148 4.5007 -4.2221 20 1 4.0092 4.6062 -2.8299 21 1 5.8163 3.7857 -4.2233 22 1 4.6974 5.8619 -4.7869 23 8 4.6833 2.0023 -3.3923 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 4.0004 1.6302 2.1271 32 1 6.4764 1.5534 1.2580 33 1 3.1733 -0.8487 -2.7619 34 1 4.9533 -0.6627 -2.6267 35 1 3.1640 -0.2177 -5.0221 36 1 4.8948 -0.6738 -4.9772 37 1 6.0693 2.6113 -5.6657 38 1 6.6411 1.1104 -4.8984 39 1 5.7461 1.0392 -6.4353 40 1 2.1646 5.1400 -5.6878 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385326093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:35 Heat of formation + Delta-G solvation = -10.796057 kcal Electronic energy + Delta-G solvation = -21234.923363 eV Core-core repulsion = 18242.781672 eV Total energy + Delta-G solvation = -2992.141691 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.11104 -40.38834 -36.63818 -34.89028 -33.16017 -32.96089 -32.91351 -30.21429 -27.43810 -27.26392 -26.39763 -23.35659 -22.95052 -22.24364 -21.19122 -20.56647 -18.81929 -18.28716 -17.57642 -16.55957 -16.31140 -16.08718 -15.89734 -15.01683 -14.91313 -14.89016 -14.62135 -14.20948 -14.12349 -13.85939 -13.43739 -13.24074 -13.08792 -13.02278 -12.89161 -12.48947 -12.41382 -12.31547 -12.16504 -11.81999 -11.56255 -11.37281 -11.08787 -10.87121 -10.73396 -10.57354 -10.18898 -9.30105 -8.34129 -6.41098 1.01177 1.34623 1.38891 1.63957 1.78836 2.16417 2.41795 2.98429 3.22645 3.49212 3.65638 3.77118 3.88252 3.95364 4.12819 4.23366 4.31284 4.33034 4.46863 4.52083 4.55141 4.62721 4.75731 4.77892 4.81914 4.87642 4.97170 5.04739 5.05952 5.11093 5.18941 5.27561 5.34793 5.40416 5.63515 5.66947 5.86282 5.95616 6.18960 6.46161 6.67176 7.20887 7.35205 8.78917 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.017844 B = 0.007951 C = 0.007448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.791517 B = 3520.823685 C = 3758.364462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.091 3.909 4 N -0.450 5.450 5 C -0.041 4.041 6 C -0.062 4.062 7 N -0.511 5.511 8 C 0.191 3.809 9 C 0.159 3.841 10 H 0.065 0.935 11 C -0.118 4.118 12 C -0.125 4.125 13 C 0.179 3.821 14 C -0.130 4.130 15 C -0.525 4.525 16 H 0.054 0.946 17 C 0.039 3.961 18 N -0.938 5.938 19 Si 0.965 3.035 20 H -0.308 1.308 21 H -0.243 1.243 22 H -0.323 1.323 23 O -0.376 6.376 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.218 0.782 32 H 0.190 0.810 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.034 0.966 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 -10.128 15.660 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.030 4.030 4 N -0.133 5.133 5 C -0.174 4.174 6 C -0.210 4.210 7 N -0.231 5.231 8 C -0.071 4.071 9 C 0.100 3.900 10 H 0.083 0.917 11 C -0.157 4.157 12 C -0.163 4.163 13 C 0.141 3.859 14 C -0.188 4.188 15 C -0.562 4.562 16 H 0.072 0.928 17 C -0.160 4.160 18 N -0.577 5.577 19 Si 0.800 3.200 20 H -0.237 1.237 21 H -0.168 1.168 22 H -0.254 1.254 23 O -0.296 6.296 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.141 0.859 30 H 0.094 0.906 31 H 0.235 0.765 32 H 0.207 0.793 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.687 -9.856 15.152 18.089 hybrid contribution -0.462 1.101 0.562 1.320 sum -1.150 -8.755 15.714 18.025 Atomic orbital electron populations 1.21688 0.92885 1.03194 1.02672 1.21847 0.97895 0.93964 1.03130 1.22305 0.74943 1.00314 1.05455 1.45644 1.08434 1.52884 1.06325 1.23317 0.90523 1.09882 0.93725 1.22861 0.98296 1.09166 0.90644 1.70181 1.19569 1.19736 1.13573 1.22791 0.86306 1.07223 0.90775 1.21056 0.93464 0.92770 0.82711 0.91702 1.22924 1.03041 0.94213 0.95487 1.22867 1.02410 0.95675 0.95363 1.20258 0.93826 0.91661 0.80200 1.22053 0.96077 1.00860 0.99776 1.21590 1.15390 0.93301 1.25955 0.92777 1.25495 0.96025 0.98836 0.95639 1.70062 1.31083 1.09978 1.46606 0.85405 0.82641 0.75060 0.76913 1.23694 1.16821 1.25430 1.88708 1.65845 1.55354 1.19694 0.90863 0.93013 0.90968 0.92490 0.90137 0.85920 0.90620 0.76539 0.79336 0.88686 0.90574 0.91073 0.89646 0.94686 0.93027 0.90741 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 71.98 0.71 -1.44 16 2 C -0.13 -2.38 6.26 30.59 0.19 -2.19 16 3 C 0.09 2.04 5.84 86.38 0.50 2.55 16 4 N -0.45 -13.26 2.75 -514.29 -1.41 -14.67 16 5 C -0.04 -1.03 11.58 83.09 0.96 -0.06 16 6 C -0.06 -1.88 11.87 83.52 0.99 -0.89 16 7 N -0.51 -20.49 11.24 -188.13 -2.11 -22.60 16 8 C 0.19 7.32 6.89 138.13 0.95 8.27 16 9 C 0.16 6.58 3.61 30.53 0.11 6.69 16 10 H 0.07 2.79 6.98 -2.39 -0.02 2.78 16 11 C -0.12 -4.06 6.57 31.90 0.21 -3.85 16 12 C -0.13 -4.73 6.26 31.58 0.20 -4.53 16 13 C 0.18 8.40 0.70 -11.17 -0.01 8.40 16 14 C -0.13 -5.66 8.15 71.98 0.59 -5.08 16 15 C -0.52 -29.43 8.61 25.60 0.22 -29.21 16 16 H 0.05 3.25 7.82 -2.91 -0.02 3.22 16 17 C 0.04 2.34 5.46 84.65 0.46 2.80 16 18 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 19 Si 0.97 52.83 24.54 68.60 1.68 54.51 16 20 H -0.31 -17.45 7.11 99.48 0.71 -16.74 16 21 H -0.24 -13.02 5.08 99.48 0.51 -12.52 16 22 H -0.32 -17.62 7.11 99.48 0.71 -16.92 16 23 O -0.38 -18.52 6.05 -148.98 -0.90 -19.42 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 1.24 7.74 -2.39 -0.02 1.22 16 28 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.12 1.94 8.13 -2.39 -0.02 1.92 16 30 H 0.08 2.02 7.16 -2.39 -0.02 2.01 16 31 H 0.22 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.19 4.49 8.06 -2.91 -0.02 4.47 16 33 H 0.09 2.69 7.74 -2.39 -0.02 2.67 16 34 H 0.08 2.59 8.05 -2.39 -0.02 2.57 16 35 H 0.07 2.71 7.54 -2.39 -0.02 2.69 16 36 H 0.08 2.79 7.70 -2.39 -0.02 2.77 16 37 H 0.03 1.62 5.80 -2.39 -0.01 1.61 16 38 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 40 H 0.26 15.78 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -75.29 317.46 4.45 -70.84 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.80 Total: 8.60 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 6.09 Total: -18.54 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -3.23 Total: -95.99 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.90 Total: -19.42 kcal Atomic # 14 Polarization: 52.83 SS G_CDS: 1.68 Total: 54.51 kcal Total: -75.29 4.45 -70.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385326093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.048 kcal (2) G-P(sol) polarization free energy of solvation -75.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds