Wall clock time and date at job start Mon Mar 30 2020 06:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47336 * 2 1 4 4 N 1.46499 * 109.47356 * 179.97438 * 3 2 1 5 5 C 1.36879 * 126.39849 * 265.02962 * 4 3 2 6 6 C 1.34675 * 106.81522 * 179.97438 * 5 4 3 7 7 N 1.34124 * 108.02139 * 0.02562 * 6 5 4 8 8 C 1.30503 * 109.25583 * 359.97438 * 7 6 5 9 9 C 1.50704 * 125.64771 * 180.02562 * 8 7 6 10 10 H 1.08993 * 109.47893 * 164.97398 * 9 8 7 11 11 C 1.53088 * 109.47805 * 284.99825 * 9 8 7 12 12 C 1.53176 * 109.16151 * 177.58176 * 11 9 8 13 13 C 1.53171 * 109.04700 * 303.03503 * 12 11 9 14 14 C 1.53096 * 109.16383 * 56.97715 * 13 12 11 15 15 H 1.08999 * 109.48991 * 62.37640 * 14 13 12 16 16 C 1.50700 * 109.48241 * 182.40961 * 14 13 12 17 17 H 1.07998 * 119.99774 * 359.94158 * 16 14 13 18 18 C 1.37871 * 120.00083 * 179.97438 * 16 14 13 19 19 N 1.31520 * 120.00018 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 120.00402 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46513 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47128 * 119.99928 * 20 18 16 23 23 H 1.48493 * 109.47355 * 240.00413 * 20 18 16 24 24 O 1.42899 * 109.47980 * 44.95320 * 9 8 7 25 25 H 1.08998 * 109.47355 * 59.99860 * 1 2 3 26 26 H 1.09002 * 109.47591 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47251 * 299.99612 * 1 2 3 28 28 H 1.09003 * 109.47251 * 240.00388 * 2 1 3 29 29 H 1.09003 * 109.47257 * 120.00600 * 2 1 3 30 30 H 1.09003 * 109.46633 * 60.00010 * 3 2 1 31 31 H 1.08998 * 109.47013 * 300.00349 * 3 2 1 32 32 H 1.07999 * 126.59366 * 0.22329 * 5 4 3 33 33 H 1.07993 * 125.98561 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.52420 * 297.49770 * 11 9 8 35 35 H 1.09001 * 109.52611 * 57.68361 * 11 9 8 36 36 H 1.09003 * 109.54650 * 183.16423 * 12 11 9 37 37 H 1.09000 * 109.53355 * 62.90620 * 12 11 9 38 38 H 1.09009 * 109.52489 * 297.07064 * 13 12 11 39 39 H 1.08999 * 109.58105 * 176.91126 * 13 12 11 40 40 H 0.97003 * 120.00001 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3168 1.5381 1.0986 6 6 5.5858 1.4984 0.6494 7 7 5.5498 1.3822 -0.6863 8 6 4.3067 1.3479 -1.0820 9 6 3.8427 1.2232 -2.5104 10 1 2.7866 0.9546 -2.5273 11 6 4.0413 2.5597 -3.2301 12 6 3.6242 2.4081 -4.6962 13 6 4.4386 1.2780 -5.3332 14 6 4.2244 -0.0090 -4.5322 15 1 3.1732 -0.2938 -4.5757 16 6 5.0686 -1.1117 -5.1175 17 1 5.6945 -0.9151 -5.9754 18 6 5.0414 -2.3716 -4.5582 19 7 4.2783 -2.6112 -3.5142 20 14 6.0873 -3.7386 -5.2841 21 1 6.8493 -3.2148 -6.4460 22 1 7.0350 -4.2365 -4.2549 23 1 5.2094 -4.8509 -5.7281 24 8 4.6029 0.2098 -3.1716 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 4.0004 1.6244 2.1276 33 1 6.4763 1.5516 1.2581 34 1 3.4277 3.3245 -2.7540 35 1 5.0909 2.8491 -3.1782 36 1 3.8157 3.3400 -5.2281 37 1 2.5624 2.1676 -4.7500 38 1 5.4964 1.5411 -5.3238 39 1 4.1103 1.1258 -6.3614 40 1 4.2595 -3.4976 -3.1204 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385394174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:16 Heat of formation + Delta-G solvation = -0.101243 kcal Electronic energy + Delta-G solvation = -20918.498486 eV Core-core repulsion = 17926.820556 eV Total energy + Delta-G solvation = -2991.677929 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.66644 -37.99392 -35.48838 -32.96031 -32.42025 -31.72526 -30.90407 -28.30425 -26.29402 -25.57423 -23.62380 -22.01925 -21.69225 -20.96783 -19.44355 -18.95180 -17.00380 -16.36107 -15.28770 -15.10579 -14.79302 -14.57973 -14.29527 -13.86677 -13.66946 -13.50415 -13.04367 -13.00990 -12.58862 -12.28379 -12.09714 -11.89990 -11.71700 -11.37165 -10.94175 -10.85763 -10.80762 -10.65985 -10.32812 -10.26468 -9.85766 -9.74593 -9.32814 -9.14515 -8.86653 -8.49070 -8.03009 -7.75344 -5.98537 -4.09339 2.43223 3.08795 3.33842 3.42252 3.45694 3.69736 4.45966 4.67123 4.76108 4.89764 5.06374 5.17769 5.23682 5.28545 5.44190 5.49876 5.54114 5.64248 5.65910 5.74818 5.86778 5.96754 6.02554 6.07485 6.10211 6.16218 6.29051 6.32290 6.50191 6.68673 6.72121 6.86660 6.89341 6.90587 7.23025 7.52694 7.60299 7.93140 8.30114 8.68787 8.82021 9.14845 9.60719 11.09344 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.006769 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.257251 B = 4135.756054 C = 4417.772121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.106 3.894 4 N -0.457 5.457 5 C -0.073 4.073 6 C -0.033 4.033 7 N -0.467 5.467 8 C 0.239 3.761 9 C 0.172 3.828 10 H 0.049 0.951 11 C -0.137 4.137 12 C -0.118 4.118 13 C -0.145 4.145 14 C 0.218 3.782 15 H 0.013 0.987 16 C -0.522 4.522 17 H 0.066 0.934 18 C 0.079 3.921 19 N -0.859 5.859 20 Si 0.892 3.108 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.284 1.284 24 O -0.333 6.333 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 8.932 7.632 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C -0.017 4.017 4 N -0.140 5.140 5 C -0.206 4.206 6 C -0.182 4.182 7 N -0.184 5.184 8 C -0.024 4.024 9 C 0.111 3.889 10 H 0.067 0.933 11 C -0.176 4.176 12 C -0.156 4.156 13 C -0.183 4.183 14 C 0.163 3.837 15 H 0.031 0.969 16 C -0.559 4.559 17 H 0.084 0.916 18 C -0.128 4.128 19 N -0.495 5.495 20 Si 0.719 3.281 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.210 1.210 24 O -0.251 6.251 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.185 0.815 33 H 0.181 0.819 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.015 8.647 7.330 13.331 hybrid contribution -0.339 -0.626 0.429 0.831 sum -7.354 8.022 7.759 13.366 Atomic orbital electron populations 1.21671 0.94612 1.02448 1.01657 1.21944 0.96426 0.95539 1.04398 1.21895 0.77122 0.98807 1.03852 1.45431 1.06977 1.54774 1.06834 1.22501 0.91605 1.14258 0.92203 1.22306 0.96025 1.07929 0.91944 1.70320 1.18726 1.18343 1.11033 1.23142 0.85444 1.03248 0.90556 1.19816 0.94499 0.90714 0.83920 0.93294 1.22121 1.02509 0.96866 0.96113 1.21612 0.99786 0.99138 0.95074 1.22276 0.99645 0.96779 0.99624 1.19790 0.95808 0.90143 0.77961 0.96928 1.21022 1.28531 0.92730 1.13645 0.91615 1.25064 0.94723 0.98680 0.94288 1.70037 1.37259 1.21359 1.20825 0.86553 0.80462 0.81823 0.79240 1.19533 1.20829 1.20999 1.88537 1.57638 1.51901 1.26992 0.92333 0.91945 0.92852 0.89801 0.91392 0.89490 0.89324 0.81542 0.81919 0.92978 0.90721 0.92736 0.92702 0.92157 0.92300 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.15 0.37 -1.11 16 2 C -0.14 -1.91 6.26 -26.73 -0.17 -2.08 16 3 C 0.11 1.34 5.61 -4.04 -0.02 1.31 16 4 N -0.46 -7.62 2.75 -113.90 -0.31 -7.93 16 5 C -0.07 -1.13 11.58 -16.56 -0.19 -1.32 16 6 C -0.03 -0.59 11.87 -17.81 -0.21 -0.81 16 7 N -0.47 -10.43 11.25 -10.82 -0.12 -10.55 16 8 C 0.24 4.98 6.79 -155.41 -1.06 3.93 16 9 C 0.17 3.68 2.94 -27.84 -0.08 3.60 16 10 H 0.05 1.01 7.10 -51.93 -0.37 0.64 16 11 C -0.14 -2.54 5.40 -26.59 -0.14 -2.68 16 12 C -0.12 -2.09 6.03 -26.55 -0.16 -2.25 16 13 C -0.15 -3.11 5.36 -26.59 -0.14 -3.25 16 14 C 0.22 5.69 2.50 -27.83 -0.07 5.62 16 15 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 16 C -0.52 -14.92 8.79 -34.44 -0.30 -15.22 16 17 H 0.07 1.83 7.74 -52.49 -0.41 1.42 16 18 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 19 N -0.86 -25.69 12.84 55.43 0.71 -24.98 16 20 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 O -0.33 -8.95 9.42 -35.23 -0.33 -9.28 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 32 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 33 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 328.14 15.07 4.94 4.94 Total: -1.00 -33.68 328.14 -9.05 -42.72 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.64 Total: 0.32 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -2.28 Total: -12.10 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.28 Total: -43.46 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.33 Total: -9.28 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.68 -9.05 -42.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385394174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.624 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds