Wall clock time and date at job start Mon Mar 30 2020 06:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47085 * 2 1 4 4 N 1.46503 * 109.47367 * 179.97438 * 3 2 1 5 5 C 1.36884 * 126.39494 * 264.69194 * 4 3 2 6 6 C 1.34669 * 106.81372 * 180.26001 * 5 4 3 7 7 N 1.34128 * 108.02336 * 359.97438 * 6 5 4 8 8 C 1.30498 * 109.25660 * 0.02562 * 7 6 5 9 9 C 1.50700 * 125.65146 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.48184 * 194.97823 * 9 8 7 11 11 C 1.53093 * 109.47956 * 74.95894 * 9 8 7 12 12 C 1.53172 * 109.16542 * 182.40778 * 11 9 8 13 13 C 1.53184 * 109.03753 * 56.97927 * 12 11 9 14 14 C 1.53091 * 109.16147 * 303.02198 * 13 12 11 15 15 H 1.08996 * 109.48340 * 177.60056 * 14 13 12 16 16 C 1.50700 * 109.48198 * 297.62199 * 14 13 12 17 17 H 1.08000 * 119.99478 * 0.02562 * 16 14 13 18 18 C 1.37878 * 119.99890 * 179.97438 * 16 14 13 19 19 N 1.31517 * 119.99410 * 180.02562 * 18 16 14 20 20 Si 1.86791 * 120.00249 * 0.02562 * 18 16 14 21 21 H 1.48501 * 109.47183 * 89.99982 * 20 18 16 22 22 H 1.48503 * 109.47509 * 210.00065 * 20 18 16 23 23 H 1.48505 * 109.47065 * 330.00179 * 20 18 16 24 24 O 1.42901 * 109.48087 * 315.01612 * 9 8 7 25 25 H 1.09001 * 109.46449 * 60.00365 * 1 2 3 26 26 H 1.08998 * 109.46849 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47354 * 300.00571 * 1 2 3 28 28 H 1.08999 * 109.47590 * 240.00123 * 2 1 3 29 29 H 1.08998 * 109.47277 * 119.99257 * 2 1 3 30 30 H 1.09003 * 109.47257 * 59.99461 * 3 2 1 31 31 H 1.09004 * 109.46881 * 299.99891 * 3 2 1 32 32 H 1.07996 * 126.59325 * 0.22285 * 5 4 3 33 33 H 1.07998 * 125.98937 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.52213 * 302.31484 * 11 9 8 35 35 H 1.09006 * 109.52542 * 62.43990 * 11 9 8 36 36 H 1.09006 * 109.54962 * 176.84704 * 12 11 9 37 37 H 1.09007 * 109.54429 * 297.02566 * 12 11 9 38 38 H 1.08994 * 109.51713 * 62.92382 * 13 12 11 39 39 H 1.08996 * 109.52376 * 183.05280 * 13 12 11 40 40 H 0.97001 * 119.99508 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5051 1.4426 0.0006 5 6 4.3168 1.5448 1.0981 6 6 5.5858 1.5088 0.6487 7 7 5.5499 1.3875 -0.6866 8 6 4.3068 1.3474 -1.0819 9 6 3.8429 1.2157 -2.5096 10 1 2.7857 1.4731 -2.5736 11 6 4.0467 -0.2264 -2.9816 12 6 3.6293 -0.3382 -4.4511 13 6 4.4400 0.6643 -5.2785 14 6 4.2210 2.0719 -4.7177 15 1 4.8288 2.7841 -5.2758 16 6 2.7662 2.4435 -4.8464 17 1 2.0674 1.7458 -5.2837 18 6 2.3273 3.6737 -4.4048 19 7 1.0576 3.9977 -4.5166 20 14 3.5360 4.8800 -3.6478 21 1 4.1065 5.7433 -4.7129 22 1 2.8325 5.7250 -2.6495 23 1 4.6299 4.1308 -2.9790 24 8 4.5998 2.0987 -3.3400 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 4.0004 1.6371 2.1265 33 1 6.4763 1.5667 1.2569 34 1 5.0973 -0.4980 -2.8797 35 1 3.4366 -0.8973 -2.3767 36 1 3.8243 -1.3489 -4.8098 37 1 2.5663 -0.1162 -4.5463 38 1 5.4985 0.4106 -5.2228 39 1 4.1111 0.6297 -6.3171 40 1 0.7487 4.8630 -4.2056 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385394178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:18 Heat of formation + Delta-G solvation = 4.550761 kcal Electronic energy + Delta-G solvation = -21448.443123 eV Core-core repulsion = 18456.966920 eV Total energy + Delta-G solvation = -2991.476203 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.73766 -38.35296 -35.50894 -32.73080 -32.60008 -31.77107 -31.24175 -28.38764 -26.30527 -25.81827 -23.62584 -22.14157 -21.91542 -21.00634 -19.42156 -18.74911 -17.02231 -16.63849 -15.32868 -15.29524 -14.99679 -14.59761 -14.22797 -13.85101 -13.62882 -13.52494 -13.20354 -12.88370 -12.47110 -12.34528 -12.24427 -11.93190 -11.88092 -11.63469 -11.41243 -10.91170 -10.77141 -10.45295 -10.28911 -10.02087 -9.98607 -9.72234 -9.44762 -9.21470 -8.81439 -8.65866 -8.13461 -7.80265 -6.16736 -4.25006 2.38895 3.04512 3.36315 3.46624 3.58784 3.77797 4.51535 4.67705 4.75167 4.84652 5.02774 5.14971 5.24446 5.28859 5.40935 5.51675 5.62470 5.65224 5.67736 5.76338 5.88664 5.94161 6.00755 6.04269 6.07810 6.18897 6.25411 6.39061 6.48030 6.66987 6.72891 6.80249 6.85236 7.01347 7.15165 7.32086 7.53753 7.61434 8.17860 8.56828 8.68642 8.86897 9.48858 10.92835 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.008906 C = 0.008631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.569310 B = 3143.248201 C = 3243.309680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.097 3.903 4 N -0.452 5.452 5 C -0.071 4.071 6 C -0.036 4.036 7 N -0.476 5.476 8 C 0.232 3.768 9 C 0.185 3.815 10 H 0.083 0.917 11 C -0.130 4.130 12 C -0.109 4.109 13 C -0.132 4.132 14 C 0.172 3.828 15 H 0.064 0.936 16 C -0.550 4.550 17 H 0.077 0.923 18 C 0.086 3.914 19 N -0.891 5.891 20 Si 0.850 3.150 21 H -0.283 1.283 22 H -0.296 1.296 23 H -0.213 1.213 24 O -0.372 6.372 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 -7.741 9.949 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.025 4.025 4 N -0.135 5.135 5 C -0.204 4.204 6 C -0.185 4.185 7 N -0.194 5.194 8 C -0.031 4.031 9 C 0.125 3.875 10 H 0.100 0.900 11 C -0.169 4.169 12 C -0.146 4.146 13 C -0.169 4.169 14 C 0.116 3.884 15 H 0.082 0.918 16 C -0.587 4.587 17 H 0.095 0.905 18 C -0.118 4.118 19 N -0.528 5.528 20 Si 0.676 3.324 21 H -0.209 1.209 22 H -0.223 1.223 23 H -0.135 1.135 24 O -0.291 6.291 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.185 0.815 33 H 0.181 0.819 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.340 -7.532 9.537 12.226 hybrid contribution -0.497 0.801 0.975 1.356 sum 0.843 -6.731 10.512 12.510 Atomic orbital electron populations 1.21700 0.94296 1.02264 1.02537 1.21893 0.96880 0.95574 1.03177 1.22039 0.76688 0.98745 1.05071 1.45436 1.07254 1.53963 1.06836 1.22550 0.91570 1.13821 0.92461 1.22288 0.96034 1.08306 0.91865 1.70297 1.18846 1.19211 1.11003 1.23298 0.85405 1.03459 0.90927 1.19690 0.96376 0.90118 0.81309 0.89994 1.22026 1.01649 0.96168 0.97061 1.21461 1.01484 0.97753 0.93939 1.21970 0.98189 0.97423 0.99366 1.20221 0.96299 0.92699 0.79166 0.91838 1.21463 0.92752 1.02075 1.42377 0.90480 1.24957 0.94931 0.97849 0.94086 1.69958 1.14675 1.22121 1.46088 0.87306 0.84207 0.80834 0.80028 1.20935 1.22261 1.13531 1.88166 1.60281 1.60402 1.20265 0.91586 0.92134 0.92648 0.90766 0.91633 0.89290 0.88099 0.81459 0.81892 0.91535 0.92776 0.93379 0.90800 0.93472 0.91916 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.14 -1.65 6.26 -26.73 -0.17 -1.81 16 3 C 0.10 1.37 5.81 -4.04 -0.02 1.34 16 4 N -0.45 -7.68 2.75 -113.90 -0.31 -7.99 16 5 C -0.07 -1.08 11.58 -16.56 -0.19 -1.27 16 6 C -0.04 -0.61 11.87 -17.81 -0.21 -0.83 16 7 N -0.48 -10.00 11.25 -10.82 -0.12 -10.12 16 8 C 0.23 4.73 6.79 -155.42 -1.06 3.67 16 9 C 0.19 3.94 2.75 -27.84 -0.08 3.87 16 10 H 0.08 1.87 5.80 -51.93 -0.30 1.56 16 11 C -0.13 -2.42 5.40 -26.59 -0.14 -2.56 16 12 C -0.11 -2.00 5.77 -26.55 -0.15 -2.15 16 13 C -0.13 -2.63 5.59 -26.59 -0.15 -2.78 16 14 C 0.17 4.06 2.65 -27.84 -0.07 3.99 16 15 H 0.06 1.53 7.57 -51.93 -0.39 1.13 16 16 C -0.55 -14.57 7.18 -34.44 -0.25 -14.82 16 17 H 0.08 2.18 7.11 -52.49 -0.37 1.80 16 18 C 0.09 2.39 5.47 -17.82 -0.10 2.30 16 19 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 20 Si 0.85 21.79 26.99 -169.99 -4.59 17.20 16 21 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 23 H -0.21 -5.58 5.31 56.52 0.30 -5.28 16 24 O -0.37 -9.01 7.03 -35.23 -0.25 -9.26 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.99 7.30 -51.93 -0.38 0.61 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.10 1.64 7.14 -51.93 -0.37 1.27 16 32 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.16 2.24 8.06 -52.49 -0.42 1.81 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.05 0.89 7.30 -51.93 -0.38 0.51 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.45 6.86 -51.93 -0.36 1.10 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 315.29 15.07 4.75 4.75 Total: -1.00 -31.76 315.29 -8.41 -40.16 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.44 Total: 2.73 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.22 Total: -12.24 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.34 Total: -43.34 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.25 Total: -9.26 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.59 Total: 17.20 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.76 -8.41 -40.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385394178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.713 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds