Wall clock time and date at job start Mon Mar 30 2020 07:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 119.99658 * 90.00442 * 3 2 1 5 5 C 1.52998 * 109.47482 * 90.00117 * 4 3 2 6 6 O 1.42898 * 109.47362 * 64.99328 * 5 4 3 7 7 C 1.42897 * 114.00447 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47682 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99878 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00556 * 180.02562 * 8 7 6 11 11 N 1.31524 * 119.99808 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00512 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46980 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47634 * 119.99208 * 12 10 8 15 15 H 1.48505 * 109.47351 * 239.99829 * 12 10 8 16 16 C 1.39668 * 120.00213 * 270.00040 * 3 2 1 17 17 C 1.38994 * 120.03429 * 179.72795 * 16 3 2 18 18 C 1.38141 * 120.06955 * 179.70096 * 17 16 3 19 19 C 1.38179 * 120.14509 * 0.59499 * 18 17 16 20 20 C 1.38943 * 120.07421 * 359.68365 * 19 18 17 21 21 N 1.39672 * 120.03804 * 179.97438 * 20 19 18 22 22 C 1.38743 * 120.03640 * 0.02562 * 16 3 2 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 28 28 H 1.08998 * 109.46888 * 209.99779 * 4 3 2 29 29 H 1.08994 * 109.47490 * 329.99842 * 4 3 2 30 30 H 1.08995 * 109.47620 * 184.99696 * 5 4 3 31 31 H 1.09002 * 109.46571 * 304.99979 * 5 4 3 32 32 H 1.09006 * 109.47099 * 300.00849 * 7 6 5 33 33 H 1.09006 * 109.47068 * 60.00229 * 7 6 5 34 34 H 0.96999 * 119.99818 * 180.02562 * 11 10 8 35 35 H 1.08001 * 119.96507 * 359.97438 * 17 16 3 36 36 H 1.08001 * 119.92264 * 180.27701 * 18 17 16 37 37 H 1.07995 * 119.96119 * 179.69710 * 19 18 17 38 38 H 0.97004 * 120.00068 * 180.02562 * 21 20 19 39 39 H 0.97000 * 119.99893 * 0.02562 * 21 20 19 40 40 H 1.08000 * 120.07472 * 359.97438 * 22 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.7075 1.8315 1.7104 6 8 4.5993 2.4373 0.7725 7 6 5.9817 2.2700 1.0933 8 6 6.8263 2.9451 0.0436 9 1 6.3545 3.4510 -0.7859 10 6 8.2012 2.9162 0.1414 11 7 8.7758 2.2998 1.1513 12 14 9.2481 3.7536 -1.1593 13 1 8.3663 4.3714 -2.1821 14 1 10.0810 4.8056 -0.5228 15 1 10.1293 2.7494 -1.8076 16 6 2.2510 2.0397 -1.2095 17 6 2.7089 3.3521 -1.2103 18 6 2.9452 4.0020 -2.4062 19 6 2.7158 3.3544 -3.6051 20 6 2.2526 2.0444 -3.6113 21 7 2.0204 1.3907 -4.8236 22 6 2.0196 1.3866 -2.4116 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.0955 3.1410 1.1385 29 1 1.5818 1.6876 2.0284 30 1 3.8640 2.2699 2.6959 31 1 3.9002 0.7595 1.7548 32 1 6.1856 2.7173 2.0662 33 1 6.2214 1.2071 1.1246 34 1 9.7431 2.2798 1.2203 35 1 2.8843 3.8627 -0.2750 36 1 3.3052 5.0202 -2.4040 37 1 2.8969 3.8669 -4.5382 38 1 1.6967 0.4763 -4.8274 39 1 2.1829 1.8511 -5.6618 40 1 1.6596 0.3683 -2.4137 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385793185.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:49 Heat of formation + Delta-G solvation = -17.141019 kcal Electronic energy + Delta-G solvation = -20311.822078 eV Core-core repulsion = 17319.405248 eV Total energy + Delta-G solvation = -2992.416829 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.32377 -37.20600 -35.94881 -33.75661 -32.70312 -31.28100 -30.28949 -28.10644 -27.32764 -26.40788 -23.46100 -22.50300 -22.09834 -21.24322 -19.77618 -17.38316 -16.58754 -16.31745 -15.70994 -15.40288 -15.16299 -14.71648 -14.46375 -14.08091 -13.91926 -13.57851 -13.17609 -12.79309 -12.73764 -12.44142 -12.14565 -11.87144 -11.84210 -11.29172 -11.08634 -10.86121 -10.78095 -10.73298 -10.62690 -10.40040 -10.22841 -9.99923 -9.05930 -8.98558 -8.74790 -8.08788 -7.35478 -6.64406 -6.04194 -4.04255 2.16560 2.35683 3.33585 3.39934 3.44653 3.47861 4.20687 4.41520 4.56941 4.89991 5.03610 5.25924 5.32679 5.35157 5.52819 5.54131 5.66209 5.69482 5.74890 5.86091 5.97788 6.03716 6.07107 6.18560 6.22010 6.26836 6.31472 6.39068 6.77711 6.93516 7.16722 7.19156 7.29653 7.49992 7.75259 7.81459 7.88960 8.03905 8.11396 8.23904 8.67204 9.10967 9.60368 11.07662 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.006356 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.323656 B = 4404.114057 C = 5586.721828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 N -0.620 5.620 4 C 0.128 3.872 5 C 0.041 3.959 6 O -0.379 6.379 7 C 0.196 3.804 8 C -0.504 4.504 9 H 0.068 0.932 10 C 0.054 3.946 11 N -0.902 5.902 12 Si 0.904 3.096 13 H -0.269 1.269 14 H -0.283 1.283 15 H -0.284 1.284 16 C 0.269 3.731 17 C -0.207 4.207 18 C -0.033 4.033 19 C -0.255 4.255 20 C 0.243 3.757 21 N -0.885 5.885 22 C -0.276 4.276 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.034 0.966 32 H 0.001 0.999 33 H 0.000 1.000 34 H 0.262 0.738 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.391 0.609 39 H 0.393 0.607 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.891 -3.035 -4.804 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.330 5.330 4 C 0.005 3.995 5 C -0.039 4.039 6 O -0.298 6.298 7 C 0.122 3.878 8 C -0.542 4.542 9 H 0.086 0.914 10 C -0.146 4.146 11 N -0.542 5.542 12 Si 0.731 3.269 13 H -0.194 1.194 14 H -0.209 1.209 15 H -0.210 1.210 16 C 0.167 3.833 17 C -0.230 4.230 18 C -0.053 4.053 19 C -0.279 4.279 20 C 0.139 3.861 21 N -0.424 5.424 22 C -0.303 4.303 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.071 0.929 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.218 0.782 39 H 0.220 0.780 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.795 -3.031 -4.673 17.695 hybrid contribution 0.969 -0.136 -0.566 1.130 sum -15.826 -3.166 -5.239 16.969 Atomic orbital electron populations 1.22229 0.96935 1.01329 1.02307 1.21286 0.93308 0.83318 1.02415 1.46389 1.71044 1.12559 1.03056 1.21482 0.94568 0.98378 0.85094 1.22785 0.91113 0.96892 0.93065 1.87960 1.17925 1.76120 1.47819 1.20153 0.76057 0.95542 0.96092 1.21098 0.90310 1.33851 1.08980 0.91380 1.24936 0.97697 0.95782 0.96195 1.69983 1.10226 1.43587 1.30389 0.86332 0.79998 0.79101 0.81420 1.19371 1.20938 1.20983 1.17363 0.90472 0.90863 0.84603 1.20488 1.09650 0.94358 0.98533 1.20560 0.94460 0.98680 0.91566 1.20210 1.14888 0.94830 0.98002 1.17357 0.92045 0.91207 0.85495 1.42374 1.77747 1.17091 1.05173 1.19840 1.19510 1.00750 0.90187 0.92345 0.92756 0.92344 0.91348 0.90939 0.90033 0.90555 0.94157 0.94787 0.98086 0.98221 0.92891 0.85914 0.86795 0.87566 0.78166 0.77958 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.24 37.16 0.38 -1.33 16 2 C 0.12 1.49 5.88 -4.04 -0.02 1.47 16 3 N -0.62 -9.52 2.58 -171.78 -0.44 -9.97 16 4 C 0.13 1.89 5.72 -4.04 -0.02 1.87 16 5 C 0.04 0.75 6.28 37.16 0.23 0.98 16 6 O -0.38 -9.07 8.17 -35.23 -0.29 -9.36 16 7 C 0.20 5.47 5.69 36.00 0.20 5.68 16 8 C -0.50 -15.14 9.43 -34.44 -0.32 -15.46 16 9 H 0.07 2.06 7.81 -52.48 -0.41 1.65 16 10 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 12 Si 0.90 22.48 29.54 -169.99 -5.02 17.46 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 C 0.27 4.68 6.29 -83.82 -0.53 4.15 16 17 C -0.21 -3.82 8.06 -39.34 -0.32 -4.14 16 18 C -0.03 -0.58 10.03 -39.64 -0.40 -0.98 16 19 C -0.26 -4.15 9.89 -39.34 -0.39 -4.54 16 20 C 0.24 3.76 6.75 -83.82 -0.57 3.19 16 21 N -0.88 -10.16 9.09 32.40 0.29 -9.87 16 22 C -0.28 -4.43 9.05 -39.19 -0.35 -4.79 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 27 H 0.07 0.92 6.19 -51.93 -0.32 0.60 16 28 H 0.08 1.21 6.18 -51.93 -0.32 0.89 16 29 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 33 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.12 2.33 5.52 -52.49 -0.29 2.04 16 36 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 38 H 0.39 3.74 8.84 -40.82 -0.36 3.37 16 39 H 0.39 3.77 8.84 -40.82 -0.36 3.41 16 40 H 0.11 1.58 6.14 -52.49 -0.32 1.26 16 LS Contribution 329.85 15.07 4.97 4.97 Total: -1.00 -33.36 329.85 -8.12 -41.47 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.16 Total: 4.52 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -2.20 Total: -12.38 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.59 Total: -46.69 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.29 Total: -9.36 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.36 -8.12 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385793185.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.333 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds