Wall clock time and date at job start Mon Mar 30 2020 07:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 119.99658 * 90.00442 * 3 2 1 5 5 C 1.52998 * 109.47482 * 90.00117 * 4 3 2 6 6 O 1.42898 * 109.47362 * 64.99328 * 5 4 3 7 7 C 1.42897 * 114.00447 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47682 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99878 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00556 * 180.02562 * 8 7 6 11 11 N 1.31524 * 119.99808 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00512 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46980 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47634 * 119.99208 * 12 10 8 15 15 H 1.48505 * 109.47351 * 239.99829 * 12 10 8 16 16 C 1.39668 * 120.00213 * 270.00040 * 3 2 1 17 17 C 1.38994 * 120.03429 * 179.72795 * 16 3 2 18 18 C 1.38141 * 120.06955 * 179.70096 * 17 16 3 19 19 C 1.38179 * 120.14509 * 0.59499 * 18 17 16 20 20 C 1.38943 * 120.07421 * 359.68365 * 19 18 17 21 21 N 1.39672 * 120.03804 * 179.97438 * 20 19 18 22 22 C 1.38743 * 120.03640 * 0.02562 * 16 3 2 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 28 28 H 1.08998 * 109.46888 * 209.99779 * 4 3 2 29 29 H 1.08994 * 109.47490 * 329.99842 * 4 3 2 30 30 H 1.08995 * 109.47620 * 184.99696 * 5 4 3 31 31 H 1.09002 * 109.46571 * 304.99979 * 5 4 3 32 32 H 1.09006 * 109.47099 * 300.00849 * 7 6 5 33 33 H 1.09006 * 109.47068 * 60.00229 * 7 6 5 34 34 H 0.96999 * 119.99818 * 180.02562 * 11 10 8 35 35 H 1.08001 * 119.96507 * 359.97438 * 17 16 3 36 36 H 1.08001 * 119.92264 * 180.27701 * 18 17 16 37 37 H 1.07995 * 119.96119 * 179.69710 * 19 18 17 38 38 H 0.97004 * 120.00068 * 180.02562 * 21 20 19 39 39 H 0.97000 * 119.99893 * 0.02562 * 21 20 19 40 40 H 1.08000 * 120.07472 * 359.97438 * 22 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.7075 1.8315 1.7104 6 8 4.5993 2.4373 0.7725 7 6 5.9817 2.2700 1.0933 8 6 6.8263 2.9451 0.0436 9 1 6.3545 3.4510 -0.7859 10 6 8.2012 2.9162 0.1414 11 7 8.7758 2.2998 1.1513 12 14 9.2481 3.7536 -1.1593 13 1 8.3663 4.3714 -2.1821 14 1 10.0810 4.8056 -0.5228 15 1 10.1293 2.7494 -1.8076 16 6 2.2510 2.0397 -1.2095 17 6 2.7089 3.3521 -1.2103 18 6 2.9452 4.0020 -2.4062 19 6 2.7158 3.3544 -3.6051 20 6 2.2526 2.0444 -3.6113 21 7 2.0204 1.3907 -4.8236 22 6 2.0196 1.3866 -2.4116 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.0955 3.1410 1.1385 29 1 1.5818 1.6876 2.0284 30 1 3.8640 2.2699 2.6959 31 1 3.9002 0.7595 1.7548 32 1 6.1856 2.7173 2.0662 33 1 6.2214 1.2071 1.1246 34 1 9.7431 2.2798 1.2203 35 1 2.8843 3.8627 -0.2750 36 1 3.3052 5.0202 -2.4040 37 1 2.8969 3.8669 -4.5382 38 1 1.6967 0.4763 -4.8274 39 1 2.1829 1.8511 -5.6618 40 1 1.6596 0.3683 -2.4137 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385793185.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:49 Heat of formation + Delta-G solvation = -38.664218 kcal Electronic energy + Delta-G solvation = -20312.755393 eV Core-core repulsion = 17319.405248 eV Total energy + Delta-G solvation = -2993.350145 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.54973 -38.71607 -37.44653 -34.92991 -34.85235 -32.49612 -31.53730 -29.64203 -28.90624 -27.92735 -24.63812 -24.45202 -23.62946 -22.44543 -20.97460 -18.70569 -18.47061 -17.72806 -17.29272 -16.81737 -16.53500 -16.33191 -15.81240 -15.71174 -15.42824 -14.80745 -14.60370 -14.17655 -13.92041 -13.75219 -13.46713 -13.40119 -13.17615 -12.82097 -12.71969 -12.57132 -12.47063 -12.17067 -11.96723 -11.85531 -11.59221 -11.45852 -11.20822 -10.84572 -10.29591 -10.15829 -8.50666 -8.31156 -7.86986 -6.41444 0.88083 1.08325 1.37793 1.38996 1.54346 2.30700 2.35508 3.02729 3.20132 3.28425 3.29684 4.04217 4.13992 4.24643 4.31312 4.48318 4.52361 4.54739 4.59900 4.63262 4.72091 4.80284 4.89697 4.92199 4.97646 5.04341 5.11869 5.17984 5.20640 5.40500 5.55278 5.58602 5.69183 5.96829 5.99845 6.01887 6.55033 6.63959 6.65749 6.88147 6.89899 7.17776 7.30460 8.81615 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.006356 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.323656 B = 4404.114057 C = 5586.721828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.114 3.886 3 N -0.625 5.625 4 C 0.135 3.865 5 C 0.031 3.969 6 O -0.388 6.388 7 C 0.213 3.787 8 C -0.534 4.534 9 H 0.058 0.942 10 C 0.006 3.994 11 N -0.933 5.933 12 Si 0.977 3.023 13 H -0.266 1.266 14 H -0.269 1.269 15 H -0.273 1.273 16 C 0.257 3.743 17 C -0.238 4.238 18 C -0.049 4.049 19 C -0.269 4.269 20 C 0.243 3.757 21 N -0.868 5.868 22 C -0.287 4.287 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.051 0.949 31 H 0.032 0.968 32 H -0.017 1.017 33 H -0.025 1.025 34 H 0.269 0.731 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.403 0.597 39 H 0.404 0.596 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.635 -3.601 -5.972 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.008 4.008 3 N -0.335 5.335 4 C 0.012 3.988 5 C -0.047 4.047 6 O -0.307 6.307 7 C 0.137 3.863 8 C -0.572 4.572 9 H 0.076 0.924 10 C -0.192 4.192 11 N -0.573 5.573 12 Si 0.800 3.200 13 H -0.190 1.190 14 H -0.194 1.194 15 H -0.198 1.198 16 C 0.153 3.847 17 C -0.262 4.262 18 C -0.068 4.068 19 C -0.293 4.293 20 C 0.137 3.863 21 N -0.409 5.409 22 C -0.314 4.314 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.136 0.864 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.001 0.999 33 H -0.008 1.008 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.232 0.768 39 H 0.234 0.766 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.574 -3.629 -5.854 18.876 hybrid contribution 1.140 -0.028 -0.179 1.154 sum -16.435 -3.657 -6.034 17.885 Atomic orbital electron populations 1.22113 0.94793 1.02660 1.02030 1.21499 0.94960 0.81696 1.02670 1.46597 1.70767 1.13577 1.02514 1.21515 0.92531 0.98703 0.86094 1.23166 0.92235 0.96465 0.92849 1.87950 1.16437 1.76782 1.49532 1.19723 0.78358 0.93417 0.94769 1.21351 0.91447 1.34910 1.09464 0.92392 1.25902 0.98802 0.96019 0.98475 1.70082 1.11032 1.44176 1.32001 0.85223 0.78017 0.78328 0.78415 1.19001 1.19450 1.19813 1.17576 0.90398 0.90761 0.85924 1.20502 1.11929 0.95441 0.98281 1.20772 0.94762 0.99236 0.92042 1.20440 1.15190 0.95478 0.98217 1.17509 0.90979 0.91114 0.86676 1.42312 1.76585 1.17566 1.04410 1.20065 1.19777 1.01563 0.90017 0.90160 0.92272 0.93339 0.90432 0.91383 0.90407 0.86404 0.93137 0.94967 0.99934 1.00755 0.92208 0.87520 0.86307 0.85778 0.76785 0.76623 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 10.24 71.98 0.74 -2.04 16 2 C 0.11 2.63 5.88 86.38 0.51 3.14 16 3 N -0.62 -18.71 2.58 -697.39 -1.80 -20.51 16 4 C 0.14 3.87 5.72 86.38 0.49 4.37 16 5 C 0.03 1.16 6.28 71.98 0.45 1.62 16 6 O -0.39 -19.15 8.17 -148.98 -1.22 -20.37 16 7 C 0.21 12.32 5.69 71.23 0.41 12.73 16 8 C -0.53 -32.86 9.43 25.60 0.24 -32.62 16 9 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 10 C 0.01 0.35 5.46 84.65 0.46 0.81 16 11 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 12 Si 0.98 46.07 29.54 68.60 2.03 48.10 16 13 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 16 C 0.26 8.92 6.29 38.19 0.24 9.16 16 17 C -0.24 -9.05 8.06 22.43 0.18 -8.87 16 18 C -0.05 -1.74 10.03 22.23 0.22 -1.51 16 19 C -0.27 -8.60 9.89 22.42 0.22 -8.38 16 20 C 0.24 7.23 6.75 38.20 0.26 7.48 16 21 N -0.87 -17.99 9.09 -51.42 -0.47 -18.46 16 22 C -0.29 -8.97 9.05 22.52 0.20 -8.77 16 23 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.08 1.64 8.07 -2.39 -0.02 1.62 16 27 H 0.07 1.62 6.19 -2.39 -0.01 1.61 16 28 H 0.08 2.32 6.18 -2.39 -0.01 2.30 16 29 H 0.12 2.41 8.07 -2.39 -0.02 2.39 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H -0.02 -1.03 8.14 -2.38 -0.02 -1.04 16 33 H -0.03 -1.56 8.14 -2.38 -0.02 -1.58 16 34 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.11 4.26 5.52 -2.91 -0.02 4.25 16 36 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 37 H 0.12 3.38 8.06 -2.91 -0.02 3.36 16 38 H 0.40 6.65 8.84 -92.71 -0.82 5.83 16 39 H 0.40 6.74 8.84 -92.71 -0.82 5.92 16 40 H 0.13 3.44 6.14 -2.91 -0.02 3.42 16 Total: -1.00 -72.80 329.85 2.86 -69.94 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -0.60 Total: 21.47 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 4.63 Total: -22.87 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -1.98 Total: -96.27 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -1.22 Total: -20.37 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -72.80 2.86 -69.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385793185.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.275 kcal (2) G-P(sol) polarization free energy of solvation -72.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds