Wall clock time and date at job start Mon Mar 30 2020 06:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46957 * 2 1 4 4 N 1.46500 * 109.46947 * 179.97438 * 3 2 1 5 5 C 1.34951 * 126.04008 * 125.00050 * 4 3 2 6 6 C 1.35314 * 107.74809 * 179.97438 * 5 4 3 7 7 C 1.50701 * 126.03937 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.48130 * 24.97405 * 7 6 5 9 9 C 1.53092 * 109.47888 * 264.93590 * 7 6 5 10 10 C 1.53184 * 109.16192 * 182.40623 * 9 7 6 11 11 C 1.53201 * 109.03821 * 56.98543 * 10 9 7 12 12 C 1.53099 * 109.15116 * 303.02043 * 11 10 9 13 13 H 1.08993 * 109.48124 * 177.59263 * 12 11 10 14 14 C 1.50697 * 109.48010 * 297.62164 * 12 11 10 15 15 H 1.07991 * 120.00449 * 359.69795 * 14 12 11 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 12 19 19 H 1.48498 * 109.47416 * 59.99812 * 18 16 14 20 20 H 1.48508 * 109.46609 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46903 * 299.99397 * 18 16 14 22 22 O 1.42904 * 109.41862 * 57.60832 * 12 11 10 23 23 C 1.39874 * 107.92039 * 0.25683 * 6 5 4 24 24 N 1.30835 * 108.20181 * 359.56388 * 23 6 5 25 25 H 1.09001 * 109.46541 * 60.00176 * 1 2 3 26 26 H 1.08996 * 109.46792 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47373 * 300.00151 * 1 2 3 28 28 H 1.09001 * 109.47373 * 239.99849 * 2 1 3 29 29 H 1.09004 * 109.46997 * 119.99605 * 2 1 3 30 30 H 1.08992 * 109.47382 * 60.00328 * 3 2 1 31 31 H 1.08991 * 109.47251 * 299.99470 * 3 2 1 32 32 H 1.08001 * 126.12129 * 359.95574 * 5 4 3 33 33 H 1.08996 * 109.52172 * 302.31570 * 9 7 6 34 34 H 1.09000 * 109.52173 * 62.44253 * 9 7 6 35 35 H 1.08994 * 109.54088 * 176.84843 * 10 9 7 36 36 H 1.08998 * 109.54386 * 297.11665 * 10 9 7 37 37 H 1.09007 * 109.53452 * 183.11935 * 11 10 9 38 38 H 1.08995 * 109.52371 * 62.92400 * 11 10 9 39 39 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 40 40 H 1.08004 * 125.89560 * 179.73574 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2994 2.0683 -0.8930 6 6 5.5840 1.8252 -0.5442 7 6 6.8086 2.3298 -1.2632 8 1 6.5607 3.2407 -1.8080 9 6 7.2987 1.2637 -2.2465 10 6 8.5774 1.7592 -2.9292 11 6 9.6220 2.0855 -1.8571 12 6 9.0419 3.1198 -0.8888 13 1 9.7649 3.3241 -0.0992 14 6 8.7398 4.3934 -1.6356 15 1 8.9457 4.4608 -2.6936 16 6 8.2059 5.4745 -0.9669 17 7 7.9551 5.3924 0.3215 18 14 7.8385 7.0558 -1.8911 19 1 6.8569 6.7814 -2.9710 20 1 7.2747 8.0584 -0.9518 21 1 9.0927 7.5849 -2.4847 22 8 7.8384 2.6084 -0.3124 23 6 5.5744 1.0185 0.5984 24 7 4.3288 0.7934 0.9294 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.9689 2.6573 -1.7358 33 1 7.5081 0.3398 -1.7075 34 1 6.5308 1.0809 -2.9982 35 1 8.9628 0.9823 -3.5893 36 1 8.3573 2.6558 -3.5087 37 1 10.5160 2.4913 -2.3309 38 1 9.8784 1.1782 -1.3103 39 1 7.5791 6.1529 0.7918 40 1 6.4450 0.6480 1.1193 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393851979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:19 Heat of formation + Delta-G solvation = 14.395423 kcal Electronic energy + Delta-G solvation = -20464.068512 eV Core-core repulsion = 17473.019206 eV Total energy + Delta-G solvation = -2991.049307 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71330 -37.94443 -35.31599 -32.65711 -32.23563 -31.38520 -30.81239 -28.48624 -26.20874 -25.28887 -22.98786 -22.19167 -21.96931 -20.28759 -19.57489 -18.77696 -16.78155 -16.05933 -15.54261 -14.82962 -14.49704 -14.37722 -14.20723 -13.84903 -13.47542 -13.38329 -13.01871 -12.58374 -12.44324 -12.17277 -12.04052 -11.71779 -11.48653 -11.34883 -11.15232 -10.96753 -10.86740 -10.61757 -10.52001 -10.15733 -10.05953 -9.65995 -9.44540 -8.89644 -8.67120 -8.39959 -7.95307 -7.50728 -5.92992 -4.08175 2.36556 2.88563 3.30653 3.36886 3.38324 3.43265 4.43728 4.53440 4.74727 4.97021 5.11688 5.18784 5.30801 5.37533 5.43877 5.52567 5.70845 5.76893 5.83121 5.87860 5.91826 5.99321 6.05454 6.25387 6.31450 6.34063 6.55127 6.57983 6.59947 6.84937 7.00349 7.06189 7.14042 7.21228 7.34858 7.47399 7.77321 7.93134 8.21220 8.29268 8.89789 9.19208 9.63772 11.10958 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.005618 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.534166 B = 4982.746612 C = 5675.191376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.139 3.861 4 N -0.383 5.383 5 C 0.045 3.955 6 C -0.198 4.198 7 C 0.180 3.820 8 H 0.065 0.935 9 C -0.134 4.134 10 C -0.109 4.109 11 C -0.142 4.142 12 C 0.213 3.787 13 H 0.059 0.941 14 C -0.559 4.559 15 H 0.056 0.944 16 C 0.081 3.919 17 N -0.856 5.856 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 O -0.365 6.365 23 C 0.074 3.926 24 N -0.311 5.311 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.167 0.833 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.040 0.960 39 H 0.259 0.741 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.704 -8.458 -3.308 14.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C 0.017 3.983 4 N -0.166 5.166 5 C -0.100 4.100 6 C -0.210 4.210 7 C 0.120 3.880 8 H 0.083 0.917 9 C -0.172 4.172 10 C -0.146 4.146 11 C -0.180 4.180 12 C 0.157 3.843 13 H 0.077 0.923 14 C -0.597 4.597 15 H 0.074 0.926 16 C -0.125 4.125 17 N -0.492 5.492 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 O -0.284 6.284 23 C -0.112 4.112 24 N -0.132 5.132 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.184 0.816 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -11.735 -8.958 -2.109 14.913 hybrid contribution 0.359 1.542 -1.397 2.112 sum -11.376 -7.416 -3.506 14.025 Atomic orbital electron populations 1.21714 0.94861 1.02180 1.01985 1.21800 0.95910 0.95994 1.03659 1.21619 0.75069 0.98314 1.03250 1.48436 1.05663 1.40907 1.21634 1.22120 0.90913 1.00105 0.96838 1.20140 0.94038 1.05989 1.00790 1.19601 0.85050 0.94704 0.88626 0.91732 1.22108 0.97271 0.99298 0.98564 1.21456 0.95561 0.99937 0.97675 1.22189 0.97988 0.99523 0.98287 1.19680 0.83588 0.89205 0.91802 0.92294 1.21502 1.44785 0.97890 0.95484 0.92621 1.25012 0.94916 0.98019 0.94591 1.70053 1.41190 1.30244 1.07675 0.86875 0.78712 0.83810 0.79839 1.20263 1.21329 1.20202 1.87907 1.23675 1.84056 1.32752 1.23705 0.94434 0.97138 0.95933 1.77207 1.01817 1.20426 1.13766 0.92551 0.92204 0.92397 0.91558 0.90477 0.90348 0.89195 0.81609 0.92795 0.93161 0.94262 0.91422 0.92736 0.94074 0.93080 0.80237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.14 -1.38 6.12 -26.73 -0.16 -1.54 16 3 C 0.14 1.60 6.51 -4.04 -0.03 1.57 16 4 N -0.38 -6.20 3.68 -61.37 -0.23 -6.43 16 5 C 0.04 0.77 11.36 -17.22 -0.20 0.58 16 6 C -0.20 -3.96 5.15 -105.05 -0.54 -4.51 16 7 C 0.18 3.94 2.82 -27.84 -0.08 3.86 16 8 H 0.06 1.57 7.09 -51.93 -0.37 1.20 16 9 C -0.13 -2.54 5.40 -26.59 -0.14 -2.68 16 10 C -0.11 -2.08 5.78 -26.53 -0.15 -2.23 16 11 C -0.14 -2.97 5.60 -26.58 -0.15 -3.12 16 12 C 0.21 5.37 3.16 -27.83 -0.09 5.28 16 13 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 14 C -0.56 -14.94 6.59 -34.44 -0.23 -15.17 16 15 H 0.06 1.46 6.88 -52.49 -0.36 1.10 16 16 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 17 N -0.86 -24.96 12.83 55.43 0.71 -24.25 16 18 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 O -0.36 -9.24 9.34 -35.23 -0.33 -9.57 16 23 C 0.07 1.44 11.64 -17.36 -0.20 1.24 16 24 N -0.31 -5.78 12.42 30.63 0.38 -5.40 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.81 8.07 -51.93 -0.42 0.40 16 32 H 0.17 2.37 8.06 -52.49 -0.42 1.95 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.36 6.85 -51.93 -0.36 1.01 16 37 H 0.05 1.10 8.14 -51.92 -0.42 0.67 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.18 3.33 8.06 -52.48 -0.42 2.91 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -30.84 325.58 -7.83 -38.67 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.56 Total: 1.46 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -1.70 Total: -15.34 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.87 Total: -36.07 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.33 Total: -9.57 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.84 -7.83 -38.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393851979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.068 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds