Wall clock time and date at job start Mon Mar 30 2020 06:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46964 * 2 1 4 4 N 1.46494 * 109.47385 * 120.00321 * 2 1 3 5 5 N 1.40084 * 126.03695 * 300.02765 * 4 2 1 6 6 C 1.30840 * 108.20883 * 179.97438 * 5 4 2 7 7 C 1.39869 * 108.19794 * 359.77564 * 6 5 4 8 8 C 1.34950 * 126.03950 * 120.00028 * 4 2 1 9 9 C 1.50700 * 126.12355 * 359.97438 * 8 4 2 10 10 H 1.09002 * 109.48161 * 24.99722 * 9 8 4 11 11 C 1.53093 * 109.47903 * 264.97289 * 9 8 4 12 12 C 1.53178 * 109.16255 * 182.39629 * 11 9 8 13 13 C 1.53178 * 109.03511 * 56.98447 * 12 11 9 14 14 C 1.53096 * 109.16278 * 303.01594 * 13 12 11 15 15 H 1.08992 * 109.48175 * 297.62679 * 14 13 12 16 16 C 1.50697 * 109.48058 * 177.60246 * 14 13 12 17 17 H 1.08003 * 120.00234 * 0.02562 * 16 14 13 18 18 C 1.37882 * 119.99843 * 180.02562 * 16 14 13 19 19 N 1.31513 * 120.00253 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99728 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47374 * 90.00389 * 20 18 16 22 22 H 1.48508 * 109.46783 * 210.00067 * 20 18 16 23 23 H 1.48496 * 109.47521 * 329.99584 * 20 18 16 24 24 O 1.42904 * 109.47876 * 145.02192 * 9 8 4 25 25 H 1.08997 * 109.47333 * 299.99303 * 1 2 3 26 26 H 1.08997 * 109.47569 * 60.00106 * 1 2 3 27 27 H 1.09006 * 109.47220 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47333 * 240.00697 * 2 1 3 29 29 H 1.08994 * 109.47539 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47222 * 300.00743 * 3 2 1 31 31 H 1.09006 * 109.46685 * 60.00084 * 3 2 1 32 32 H 1.07993 * 125.89958 * 180.02562 * 6 5 4 33 33 H 1.08003 * 126.04426 * 180.22910 * 7 6 5 34 34 H 1.09000 * 109.52228 * 302.30610 * 11 9 8 35 35 H 1.08997 * 109.52191 * 62.43104 * 11 9 8 36 36 H 1.09002 * 109.54461 * 176.84793 * 12 11 9 37 37 H 1.08992 * 109.54753 * 297.02597 * 12 11 9 38 38 H 1.08999 * 109.52488 * 62.92180 * 13 12 11 39 39 H 1.08996 * 109.52248 * 183.05161 * 13 12 11 40 40 H 0.96992 * 120.00131 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.7587 -0.3243 2.5230 6 6 2.3625 -1.1788 3.3086 7 6 3.0208 -2.1183 2.5084 8 6 2.7974 -1.7924 1.2142 9 6 3.3194 -2.5314 0.0090 10 1 3.3696 -1.8509 -0.8410 11 6 2.3807 -3.6944 -0.3227 12 6 2.9492 -4.4761 -1.5110 13 6 4.3638 -4.9513 -1.1656 14 6 5.2260 -3.7397 -0.8014 15 1 5.3011 -3.0751 -1.6620 16 6 6.6032 -4.2043 -0.4034 17 1 6.8405 -5.2580 -0.4098 18 6 7.5603 -3.2843 -0.0310 19 7 7.2712 -2.0014 -0.0226 20 14 9.2676 -3.8602 0.4616 21 1 10.1392 -3.9096 -0.7397 22 1 9.8425 -2.9143 1.4517 23 1 9.1785 -5.2143 1.0647 24 8 4.6249 -3.0398 0.2903 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 2.3508 -1.1639 4.3884 33 1 3.6061 -2.9546 2.8611 34 1 2.2983 -4.3538 0.5413 35 1 1.3954 -3.3054 -0.5793 36 1 2.3151 -5.3385 -1.7171 37 1 2.9839 -3.8311 -2.3888 38 1 4.3215 -5.6361 -0.3187 39 1 4.7967 -5.4620 -2.0258 40 1 7.9443 -1.3543 0.2397 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394509932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:29 Heat of formation + Delta-G solvation = 15.939586 kcal Electronic energy + Delta-G solvation = -20931.584651 eV Core-core repulsion = 17940.602305 eV Total energy + Delta-G solvation = -2990.982347 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.85359 -38.05341 -35.42959 -33.07913 -32.53719 -31.30464 -29.55295 -28.42825 -27.25672 -25.68630 -23.65174 -22.66026 -21.86507 -20.29334 -19.21042 -18.82382 -16.93528 -16.17781 -15.02979 -14.82825 -14.65838 -14.48000 -14.35123 -13.98430 -13.69314 -13.18201 -12.85769 -12.72759 -12.54947 -12.19373 -12.09132 -11.91121 -11.73779 -11.30801 -11.16819 -10.98436 -10.91892 -10.72341 -10.40209 -10.33216 -10.21311 -9.93023 -9.72063 -8.97768 -8.81555 -8.52287 -8.06151 -7.83731 -6.03877 -4.16443 2.35409 2.83939 3.29994 3.37548 3.40168 3.40654 4.40246 4.61318 4.75920 4.97320 5.06241 5.19700 5.31879 5.41707 5.46880 5.52477 5.59911 5.68403 5.73320 5.75507 5.80414 5.95037 5.99906 6.05240 6.19327 6.23432 6.31235 6.35042 6.46059 6.58900 6.72531 6.78655 6.83024 6.89782 7.21757 7.45171 7.51199 7.86941 8.20653 8.23094 8.72489 9.05390 9.54239 11.03480 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020646 B = 0.006351 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.861829 B = 4407.434506 C = 4903.579141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.154 3.846 3 C -0.160 4.160 4 N -0.365 5.365 5 N -0.306 5.306 6 C 0.037 3.963 7 C -0.248 4.248 8 C 0.108 3.892 9 C 0.149 3.851 10 H 0.047 0.953 11 C -0.137 4.137 12 C -0.119 4.119 13 C -0.145 4.145 14 C 0.220 3.780 15 H 0.014 0.986 16 C -0.526 4.526 17 H 0.065 0.935 18 C 0.079 3.921 19 N -0.857 5.857 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.272 1.272 24 O -0.340 6.340 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.177 0.823 33 H 0.147 0.853 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.839 2.207 -0.980 12.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.052 3.948 3 C -0.218 4.218 4 N -0.150 5.150 5 N -0.128 5.128 6 C -0.148 4.148 7 C -0.276 4.276 8 C -0.018 4.018 9 C 0.088 3.912 10 H 0.065 0.935 11 C -0.175 4.175 12 C -0.157 4.157 13 C -0.183 4.183 14 C 0.164 3.836 15 H 0.032 0.968 16 C -0.564 4.564 17 H 0.083 0.917 18 C -0.128 4.128 19 N -0.493 5.493 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.197 1.197 24 O -0.259 6.259 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.194 0.806 33 H 0.165 0.835 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.459 3.527 -0.947 12.983 hybrid contribution 1.365 -0.945 0.163 1.668 sum -11.094 2.583 -0.785 11.418 Atomic orbital electron populations 1.22108 0.93734 1.02688 1.02972 1.21226 0.95052 0.94019 0.84482 1.22114 1.02348 0.94520 1.02781 1.48593 1.39958 1.21378 1.05046 1.77141 1.25382 1.23662 0.86569 1.23742 0.97506 0.93908 0.99685 1.21208 1.09689 1.05577 0.91173 1.20880 0.94486 0.89103 0.97377 1.20052 0.88041 0.92573 0.90540 0.93496 1.22127 0.97772 0.98223 0.99420 1.21620 0.97924 0.99043 0.97122 1.22272 0.94151 1.00995 1.00848 1.19770 0.90261 0.86965 0.86565 0.96843 1.20974 0.93191 0.93388 1.48800 0.91658 1.25076 0.98702 0.94818 0.94164 1.70025 1.33878 1.00660 1.44703 0.86609 0.84168 0.78841 0.78436 1.20564 1.21075 1.19656 1.88454 1.24014 1.72920 1.40488 0.91272 0.91055 0.92248 0.88348 0.91700 0.91091 0.91354 0.80648 0.83535 0.91130 0.92801 0.92760 0.92631 0.92253 0.92255 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.45 37.16 0.35 -1.44 16 2 C 0.15 2.17 3.64 -67.93 -0.25 1.92 16 3 C -0.16 -2.08 9.45 37.16 0.35 -1.72 16 4 N -0.36 -6.45 3.28 -50.70 -0.17 -6.62 16 5 N -0.31 -5.51 12.43 30.62 0.38 -5.13 16 6 C 0.04 0.64 12.03 -17.36 -0.21 0.43 16 7 C -0.25 -4.84 10.37 -40.01 -0.41 -5.26 16 8 C 0.11 2.14 6.00 -82.26 -0.49 1.65 16 9 C 0.15 3.04 2.78 -27.84 -0.08 2.96 16 10 H 0.05 0.96 6.88 -51.93 -0.36 0.61 16 11 C -0.14 -2.36 5.40 -26.59 -0.14 -2.50 16 12 C -0.12 -2.02 6.03 -26.55 -0.16 -2.18 16 13 C -0.14 -2.95 5.36 -26.59 -0.14 -3.09 16 14 C 0.22 5.51 2.50 -27.83 -0.07 5.44 16 15 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 16 C -0.53 -14.50 8.79 -34.44 -0.30 -14.80 16 17 H 0.07 1.75 7.74 -52.48 -0.41 1.34 16 18 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 19 N -0.86 -25.11 12.84 55.43 0.71 -24.40 16 20 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 24 O -0.34 -8.60 9.13 -35.23 -0.32 -8.92 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.10 1.34 6.56 -51.93 -0.34 1.00 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 33 H 0.15 2.91 8.06 -52.48 -0.42 2.49 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 327.19 15.07 4.93 4.93 Total: -1.00 -31.09 327.19 -7.72 -38.81 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.58 Total: 1.63 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -1.65 Total: -16.48 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.93 Total: -36.14 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.32 Total: -8.92 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.09 -7.72 -38.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394509932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.753 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds