Wall clock time and date at job start Mon Mar 30 2020 06:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46953 * 2 1 4 4 N 1.46505 * 109.47296 * 119.99523 * 2 1 3 5 5 N 1.40088 * 126.03894 * 299.98292 * 4 2 1 6 6 C 1.30830 * 108.20253 * 180.02562 * 5 4 2 7 7 C 1.39872 * 108.20635 * 359.77185 * 6 5 4 8 8 C 1.34952 * 126.03463 * 120.00042 * 4 2 1 9 9 C 1.50697 * 126.12799 * 359.94745 * 8 4 2 10 10 H 1.08992 * 110.55193 * 27.87758 * 9 8 4 11 11 C 1.55003 * 110.61605 * 264.99873 * 9 8 4 12 12 C 1.54808 * 102.09032 * 204.32074 * 11 9 8 13 13 C 1.54104 * 104.19150 * 20.87777 * 12 11 9 14 14 C 1.52993 * 109.87886 * 242.46015 * 13 12 11 15 15 C 1.50702 * 109.87764 * 121.45660 * 13 12 11 16 16 H 1.08001 * 120.00027 * 6.23069 * 15 13 12 17 17 C 1.37869 * 119.99776 * 186.23490 * 15 13 12 18 18 N 1.31517 * 120.00212 * 5.51367 * 17 15 13 19 19 Si 1.86800 * 119.99926 * 185.51939 * 17 15 13 20 20 H 1.48501 * 109.47276 * 84.99444 * 19 17 15 21 21 H 1.48500 * 109.47228 * 324.99554 * 19 17 15 22 22 H 1.48502 * 109.47124 * 204.99439 * 19 17 15 23 23 O 1.43749 * 107.41430 * 1.95768 * 13 12 11 24 24 H 1.08997 * 109.47211 * 300.00071 * 1 2 3 25 25 H 1.08995 * 109.47255 * 60.00645 * 1 2 3 26 26 H 1.09002 * 109.46839 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47457 * 239.99438 * 2 1 3 28 28 H 1.08995 * 109.47042 * 299.99425 * 3 2 1 29 29 H 1.08997 * 109.47220 * 59.99934 * 3 2 1 30 30 H 1.09009 * 109.46843 * 179.97438 * 3 2 1 31 31 H 1.08012 * 125.89663 * 180.02562 * 6 5 4 32 32 H 1.08003 * 126.03765 * 180.23409 * 7 6 5 33 33 H 1.08996 * 110.90860 * 86.11985 * 11 9 8 34 34 H 1.09002 * 110.90411 * 322.51432 * 11 9 8 35 35 H 1.09007 * 110.48493 * 262.20504 * 12 11 9 36 36 H 1.08998 * 110.49000 * 139.55696 * 12 11 9 37 37 H 1.09002 * 109.47349 * 294.50453 * 14 13 12 38 38 H 1.08996 * 109.47788 * 54.51249 * 14 13 12 39 39 H 1.08999 * 109.47112 * 174.51068 * 14 13 12 40 40 H 0.96999 * 119.99828 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 7 1.7594 -0.3236 2.5232 6 6 2.3638 -1.1775 3.3087 7 6 3.0218 -2.1173 2.5087 8 6 2.7974 -1.7923 1.2145 9 6 3.3189 -2.5318 0.0094 10 1 3.4240 -1.8553 -0.8387 11 6 2.3861 -3.7165 -0.3497 12 6 3.3447 -4.6648 -1.1103 13 6 4.7500 -4.2273 -0.6537 14 6 5.5511 -3.7168 -1.8529 15 6 5.4667 -5.3898 -0.0163 16 1 5.0194 -6.3727 -0.0292 17 6 6.6933 -5.1983 0.5833 18 7 7.1884 -3.9851 0.6953 19 14 7.6522 -6.6623 1.2364 20 1 8.4442 -7.2666 0.1351 21 1 6.7070 -7.6716 1.7779 22 1 8.5679 -6.2127 2.3156 23 8 4.5809 -3.1712 0.3067 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4425 0.0005 31 1 2.3529 -1.1620 4.3887 32 1 3.6074 -2.9534 2.8616 33 1 1.5710 -3.3883 -0.9945 34 1 1.9999 -4.1942 0.5507 35 1 3.2355 -4.5343 -2.1870 36 1 3.1579 -5.7014 -0.8298 37 1 5.7284 -4.5378 -2.5477 38 1 4.9900 -2.9295 -2.3563 39 1 6.5061 -3.3192 -1.5092 40 1 8.0515 -3.8505 1.1169 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394561045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:09 Heat of formation + Delta-G solvation = 27.276926 kcal Electronic energy + Delta-G solvation = -20981.388355 eV Core-core repulsion = 17990.897632 eV Total energy + Delta-G solvation = -2990.490723 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86758 -38.28584 -35.47586 -33.07713 -31.09267 -31.00603 -29.51873 -28.48511 -27.31574 -25.52092 -24.56856 -22.69929 -21.43581 -20.05651 -19.34333 -18.79273 -17.10431 -16.13297 -15.19620 -14.71181 -14.61468 -14.38103 -14.16366 -13.53278 -13.33142 -12.98398 -12.87841 -12.65820 -12.33169 -12.24486 -12.02610 -11.62932 -11.38050 -11.37036 -11.19501 -10.90623 -10.82863 -10.78419 -10.48195 -10.29401 -10.20560 -9.86621 -9.66314 -9.10008 -8.80032 -8.50846 -8.11126 -7.88919 -5.96026 -4.10187 2.31529 2.80542 3.31602 3.38253 3.38989 3.40950 4.43296 4.56447 4.79673 4.92150 5.00643 5.22654 5.29690 5.41802 5.47168 5.50821 5.63091 5.67980 5.71079 5.71761 5.86648 6.02012 6.10313 6.13920 6.26589 6.36235 6.43782 6.48287 6.67564 6.72762 6.79484 6.84200 7.05647 7.17318 7.21999 7.48613 7.75548 7.96555 8.17830 8.30116 8.49572 9.00744 9.59266 11.08256 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.026580 B = 0.005960 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.179853 B = 4697.017899 C = 5098.659499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 C -0.160 4.160 4 N -0.367 5.367 5 N -0.306 5.306 6 C 0.037 3.963 7 C -0.244 4.244 8 C 0.103 3.897 9 C 0.126 3.874 10 H 0.055 0.945 11 C -0.138 4.138 12 C -0.140 4.140 13 C 0.225 3.775 14 C -0.144 4.144 15 C -0.529 4.529 16 H 0.063 0.937 17 C 0.081 3.919 18 N -0.852 5.852 19 Si 0.887 3.113 20 H -0.280 1.280 21 H -0.274 1.274 22 H -0.286 1.286 23 O -0.315 6.315 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.177 0.823 32 H 0.151 0.849 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.011 0.989 39 H 0.074 0.926 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.545 6.442 -2.403 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.053 3.947 3 C -0.217 4.217 4 N -0.153 5.153 5 N -0.128 5.128 6 C -0.148 4.148 7 C -0.273 4.273 8 C -0.024 4.024 9 C 0.065 3.935 10 H 0.073 0.927 11 C -0.176 4.176 12 C -0.178 4.178 13 C 0.187 3.813 14 C -0.202 4.202 15 C -0.566 4.566 16 H 0.081 0.919 17 C -0.125 4.125 18 N -0.487 5.487 19 Si 0.714 3.286 20 H -0.206 1.206 21 H -0.199 1.199 22 H -0.212 1.212 23 O -0.233 6.233 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.194 0.806 32 H 0.169 0.831 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.030 0.970 39 H 0.093 0.907 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.005 7.718 -2.347 13.645 hybrid contribution 1.020 -1.501 0.292 1.838 sum -9.985 6.217 -2.055 11.941 Atomic orbital electron populations 1.22107 0.93682 1.02815 1.02961 1.21218 0.95207 0.93860 0.84460 1.22119 1.02061 0.94667 1.02899 1.48602 1.40083 1.21521 1.05045 1.77142 1.25245 1.23854 0.86556 1.23773 0.97399 0.93920 0.99735 1.21303 1.09506 1.05371 0.91114 1.20915 0.94858 0.89175 0.97438 1.21241 0.88836 0.93307 0.90140 0.92712 1.23055 0.97519 0.96529 1.00530 1.23084 0.96783 0.99662 0.98266 1.19704 0.89337 0.85725 0.86547 1.22115 1.02423 0.98108 0.97517 1.21009 1.03122 0.92978 1.39511 0.91888 1.25023 0.97347 0.95331 0.94819 1.70063 1.17778 1.19777 1.41132 0.86715 0.80064 0.83135 0.78664 1.20570 1.19883 1.21213 1.89486 1.31332 1.48027 1.54472 0.91267 0.91063 0.92140 0.88396 0.91062 0.91277 0.91942 0.80594 0.83141 0.92346 0.90897 0.92819 0.91203 0.94001 0.96986 0.90698 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.45 37.15 0.35 -1.39 16 2 C 0.15 2.05 3.65 -67.93 -0.25 1.80 16 3 C -0.16 -1.88 9.45 37.16 0.35 -1.53 16 4 N -0.37 -6.26 3.28 -50.69 -0.17 -6.43 16 5 N -0.31 -5.38 12.43 30.63 0.38 -5.00 16 6 C 0.04 0.63 12.02 -17.37 -0.21 0.42 16 7 C -0.24 -4.81 10.35 -40.01 -0.41 -5.22 16 8 C 0.10 1.99 6.09 -82.26 -0.50 1.49 16 9 C 0.13 2.53 3.36 -26.83 -0.09 2.44 16 10 H 0.06 1.05 7.07 -51.93 -0.37 0.68 16 11 C -0.14 -2.51 6.58 -24.72 -0.16 -2.67 16 12 C -0.14 -2.81 6.26 -25.20 -0.16 -2.97 16 13 C 0.22 5.44 0.74 -91.20 -0.07 5.38 16 14 C -0.14 -3.34 8.39 37.15 0.31 -3.03 16 15 C -0.53 -14.20 8.21 -34.44 -0.28 -14.48 16 16 H 0.06 1.66 7.36 -52.49 -0.39 1.27 16 17 C 0.08 2.22 5.25 -17.82 -0.09 2.12 16 18 N -0.85 -24.33 11.28 55.43 0.63 -23.71 16 19 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 O -0.31 -7.94 9.29 -35.23 -0.33 -8.26 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.10 1.23 6.65 -51.93 -0.35 0.89 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.18 2.36 8.06 -52.48 -0.42 1.94 16 32 H 0.15 3.15 8.06 -52.48 -0.42 2.73 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.36 8.05 -51.93 -0.42 0.94 16 35 H 0.05 0.97 7.70 -51.92 -0.40 0.57 16 36 H 0.07 1.40 7.41 -51.93 -0.38 1.02 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 1.94 6.86 -51.93 -0.36 1.59 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 325.73 15.07 4.91 4.91 Total: -1.00 -30.40 325.73 -7.25 -37.66 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.44 Total: 2.58 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -1.21 Total: -17.64 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.84 Total: -35.14 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.33 Total: -8.26 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.40 -7.25 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394561045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.934 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds