Wall clock time and date at job start Mon Mar 30 2020 06:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46499 * 109.46799 * 240.00475 * 2 1 3 5 5 N 1.40080 * 126.04290 * 60.02247 * 4 2 1 6 6 C 1.30835 * 108.21156 * 179.97438 * 5 4 2 7 7 C 1.39872 * 108.19727 * 0.02562 * 6 5 4 8 8 C 1.34950 * 126.03517 * 239.71649 * 4 2 1 9 9 C 1.50703 * 126.12816 * 0.02562 * 8 4 2 10 10 H 1.08996 * 110.27286 * 27.08658 * 9 8 4 11 11 C 1.54951 * 110.30628 * 264.99862 * 9 8 4 12 12 C 1.55307 * 100.94263 * 204.63819 * 11 9 8 13 13 C 1.54378 * 102.25033 * 34.13305 * 12 11 9 14 14 C 1.53000 * 109.83357 * 98.24772 * 13 12 11 15 15 C 1.50703 * 109.83181 * 219.13258 * 13 12 11 16 16 H 1.07997 * 119.99854 * 359.97438 * 15 13 12 17 17 C 1.37878 * 120.00112 * 180.02562 * 15 13 12 18 18 N 1.31507 * 119.99893 * 179.97438 * 17 15 13 19 19 Si 1.86798 * 119.99839 * 359.97438 * 17 15 13 20 20 H 1.48501 * 109.47094 * 90.00254 * 19 17 15 21 21 H 1.48503 * 109.47225 * 210.00118 * 19 17 15 22 22 H 1.48500 * 109.47325 * 330.00250 * 19 17 15 23 23 O 1.43240 * 107.59040 * 338.64496 * 13 12 11 24 24 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 26 26 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 27 27 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 28 28 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 29 29 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 31 31 H 1.07996 * 125.90322 * 179.97438 * 6 5 4 32 32 H 1.08007 * 126.03484 * 179.97438 * 7 6 5 33 33 H 1.08996 * 111.12595 * 322.55744 * 11 9 8 34 34 H 1.09000 * 111.12635 * 86.67909 * 11 9 8 35 35 H 1.08994 * 110.84863 * 152.32311 * 12 11 9 36 36 H 1.09002 * 110.84731 * 275.94820 * 12 11 9 37 37 H 1.09002 * 109.46792 * 59.99838 * 14 13 12 38 38 H 1.08991 * 109.47688 * 179.97438 * 14 13 12 39 39 H 1.09006 * 109.46823 * 300.00242 * 14 13 12 40 40 H 0.97006 * 119.99980 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 7 1.7594 -0.3236 -2.5231 6 6 2.3637 -1.1775 -3.3088 7 6 3.0254 -2.1147 -2.5087 8 6 2.8017 -1.7892 -1.2145 9 6 3.3295 -2.5243 -0.0095 10 1 2.6612 -2.3854 0.8403 11 6 4.7552 -2.0286 0.3410 12 6 5.3202 -3.2643 1.0933 13 6 4.6458 -4.4371 0.3498 14 6 5.6103 -5.0185 -0.6858 15 6 4.2484 -5.5061 1.3349 16 1 4.4519 -5.3732 2.3872 17 6 3.6261 -6.6542 0.8927 18 7 3.2798 -7.5873 1.7523 19 14 3.2749 -6.8844 -0.9275 20 1 4.4297 -7.5589 -1.5730 21 1 2.0576 -7.7182 -1.0952 22 1 3.0583 -5.5590 -1.5613 23 8 3.4804 -3.9219 -0.3045 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9562 0.8901 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 2.3527 -1.1620 -4.3886 32 1 3.6145 -2.9484 -2.8616 33 1 5.3313 -1.8203 -0.5605 34 1 4.7184 -1.1548 0.9915 35 1 6.4046 -3.3153 0.9957 36 1 5.0243 -3.2485 2.1422 37 1 6.5082 -5.3791 -0.1839 38 1 5.1287 -5.8460 -1.2067 39 1 5.8815 -4.2449 -1.4043 40 1 2.8423 -8.3952 1.4412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394561046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:11 Heat of formation + Delta-G solvation = 15.485083 kcal Electronic energy + Delta-G solvation = -21113.323175 eV Core-core repulsion = 18122.321119 eV Total energy + Delta-G solvation = -2991.002056 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.29804 -40.27361 -36.56118 -35.11326 -33.20427 -32.99143 -31.08441 -30.27811 -28.21655 -27.26957 -26.47878 -23.89649 -23.29498 -21.60404 -21.08921 -20.17392 -18.66097 -18.13274 -17.51591 -16.36346 -16.06209 -15.87301 -15.64140 -15.28755 -14.70154 -14.65255 -14.37311 -14.11916 -13.95601 -13.84249 -13.54900 -13.13810 -13.05349 -12.97727 -12.82183 -12.38540 -12.35288 -12.30849 -12.21413 -12.00567 -11.67272 -11.51846 -11.39735 -10.83724 -10.73031 -10.27756 -9.99249 -9.39472 -8.33216 -6.42983 0.88600 1.32493 1.40434 1.55063 1.67819 1.93011 2.40825 2.92639 3.33308 3.50235 3.61615 3.82685 3.95552 3.98524 4.10860 4.19598 4.29774 4.38581 4.53502 4.65012 4.67611 4.68552 4.71671 4.79056 4.81145 4.84797 4.92746 4.97292 5.03029 5.13125 5.18145 5.22429 5.23720 5.35210 5.60319 5.66697 5.81375 6.10049 6.20450 6.52364 6.74297 6.81058 7.34928 8.81083 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.023546 B = 0.006642 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.884309 B = 4214.506657 C = 4375.331641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 C -0.148 4.148 4 N -0.361 5.361 5 N -0.313 5.313 6 C 0.040 3.960 7 C -0.272 4.272 8 C 0.082 3.918 9 C 0.133 3.867 10 H 0.066 0.934 11 C -0.126 4.126 12 C -0.124 4.124 13 C 0.185 3.815 14 C -0.146 4.146 15 C -0.523 4.523 16 H 0.043 0.957 17 C 0.032 3.968 18 N -0.942 5.942 19 Si 0.936 3.064 20 H -0.277 1.277 21 H -0.316 1.316 22 H -0.212 1.212 23 O -0.381 6.381 24 H 0.042 0.958 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.210 0.790 32 H 0.139 0.861 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.029 0.971 39 H 0.065 0.935 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 17.828 -5.674 18.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.038 3.962 3 C -0.206 4.206 4 N -0.146 5.146 5 N -0.135 5.135 6 C -0.145 4.145 7 C -0.302 4.302 8 C -0.046 4.046 9 C 0.074 3.926 10 H 0.083 0.917 11 C -0.164 4.164 12 C -0.162 4.162 13 C 0.147 3.853 14 C -0.203 4.203 15 C -0.560 4.560 16 H 0.061 0.939 17 C -0.167 4.167 18 N -0.581 5.581 19 Si 0.765 3.235 20 H -0.204 1.204 21 H -0.245 1.245 22 H -0.135 1.135 23 O -0.301 6.301 24 H 0.061 0.939 25 H 0.121 0.879 26 H 0.081 0.919 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.226 0.774 32 H 0.157 0.843 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.910 18.686 -5.583 19.523 hybrid contribution 0.169 -1.789 -0.383 1.837 sum -0.741 16.897 -5.966 17.935 Atomic orbital electron populations 1.22090 0.92761 1.02153 1.04193 1.21684 0.96252 0.94950 0.83320 1.22056 1.01460 0.93026 1.04066 1.48943 1.38296 1.21514 1.05834 1.77150 1.24634 1.24772 0.86952 1.24242 0.96199 0.92795 1.01219 1.21344 1.11844 1.05301 0.91673 1.21123 0.95738 0.90427 0.97333 1.21196 0.97159 0.83429 0.90850 0.91667 1.23169 0.93463 0.98509 1.01266 1.22965 1.01169 0.92705 0.99325 1.20101 0.83284 0.92267 0.89650 1.22237 0.99242 0.99922 0.98897 1.21516 1.39181 1.01311 0.94027 0.93869 1.25777 0.93813 0.95295 1.01865 1.70050 1.42192 1.09185 1.36721 0.86145 0.75611 0.79864 0.81905 1.20401 1.24521 1.13536 1.88772 1.48257 1.20077 1.72956 0.93918 0.87862 0.91934 0.87602 0.88033 0.92419 0.92129 0.77381 0.84324 0.89823 0.88202 0.89147 0.91734 0.91256 0.95283 0.91563 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.45 71.98 0.68 -2.50 16 2 C 0.14 3.12 3.65 44.99 0.16 3.29 16 3 C -0.15 -2.58 9.45 71.98 0.68 -1.90 16 4 N -0.36 -10.71 3.28 -314.29 -1.03 -11.74 16 5 N -0.31 -9.55 12.43 -57.03 -0.71 -10.26 16 6 C 0.04 1.15 12.03 85.24 1.03 2.18 16 7 C -0.27 -9.02 10.34 21.99 0.23 -8.79 16 8 C 0.08 2.74 6.05 41.41 0.25 2.99 16 9 C 0.13 4.72 3.54 30.52 0.11 4.83 16 10 H 0.07 2.31 7.01 -2.39 -0.02 2.29 16 11 C -0.13 -3.65 6.56 32.05 0.21 -3.44 16 12 C -0.12 -4.32 6.07 31.85 0.19 -4.13 16 13 C 0.18 8.15 0.78 -11.07 -0.01 8.14 16 14 C -0.15 -5.89 8.22 71.98 0.59 -5.30 16 15 C -0.52 -29.13 8.83 25.60 0.23 -28.91 16 16 H 0.04 2.62 7.76 -2.91 -0.02 2.60 16 17 C 0.03 1.85 5.45 84.66 0.46 2.32 16 18 N -0.94 -59.32 13.96 21.45 0.30 -59.02 16 19 Si 0.94 47.15 23.91 68.60 1.64 48.79 16 20 H -0.28 -13.28 6.87 99.48 0.68 -12.59 16 21 H -0.32 -16.37 7.11 99.48 0.71 -15.66 16 22 H -0.21 -10.28 5.38 99.48 0.54 -9.75 16 23 O -0.38 -16.97 7.09 -148.98 -1.06 -18.02 16 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.11 2.26 6.62 -2.39 -0.02 2.25 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.21 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.14 4.69 8.06 -2.91 -0.02 4.67 16 33 H 0.08 2.30 8.05 -2.39 -0.02 2.28 16 34 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 2.75 7.82 -2.39 -0.02 2.73 16 36 H 0.06 2.35 7.65 -2.39 -0.02 2.34 16 37 H 0.07 2.63 8.14 -2.39 -0.02 2.62 16 38 H 0.03 1.26 3.18 -2.39 -0.01 1.26 16 39 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 40 H 0.26 15.78 8.31 -92.70 -0.77 15.00 16 Total: -1.00 -70.30 316.24 4.77 -65.53 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.81 Total: 15.95 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 4.81 Total: -31.22 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -1.44 Total: -81.02 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -1.06 Total: -18.02 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.64 Total: 48.79 kcal Total: -70.30 4.77 -65.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394561046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.020 kcal (2) G-P(sol) polarization free energy of solvation -70.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds