Wall clock time and date at job start Mon Mar 30 2020 07:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47079 * 2 1 4 4 C 1.50700 * 109.47125 * 239.99952 * 2 1 3 5 5 H 1.08000 * 119.99960 * 239.99990 * 4 2 1 6 6 C 1.37875 * 120.00079 * 60.00222 * 4 2 1 7 7 N 1.31509 * 119.99861 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99882 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47506 * 89.99810 * 8 6 4 10 10 H 1.48502 * 109.47014 * 209.99872 * 8 6 4 11 11 H 1.48500 * 109.46993 * 329.99699 * 8 6 4 12 12 C 1.53003 * 109.46897 * 119.99572 * 2 1 3 13 13 C 1.50690 * 109.47386 * 295.00412 * 12 2 1 14 14 N 1.31126 * 126.55526 * 89.97920 * 13 12 2 15 15 C 1.34492 * 105.61910 * 180.02562 * 14 13 12 16 16 C 1.50703 * 126.28978 * 180.02562 * 15 14 13 17 17 H 1.09000 * 110.43625 * 0.70618 * 16 15 14 18 18 C 1.54889 * 110.48526 * 123.24624 * 16 15 14 19 19 C 1.55031 * 102.68432 * 156.52169 * 18 16 15 20 20 C 1.54268 * 104.27666 * 322.22741 * 19 18 16 21 21 C 1.53872 * 106.59868 * 23.52366 * 20 19 18 22 22 H 1.08998 * 110.03758 * 119.28279 * 21 20 19 23 23 C 1.52997 * 110.07233 * 240.69109 * 21 20 19 24 24 N 1.29948 * 107.42516 * 0.02562 * 15 14 13 25 25 O 1.21303 * 110.24669 * 359.97438 * 24 15 14 26 26 H 1.09001 * 109.47636 * 300.00089 * 1 2 3 27 27 H 1.09001 * 109.47279 * 60.00198 * 1 2 3 28 28 H 1.09007 * 109.47333 * 179.97438 * 1 2 3 29 29 H 0.97010 * 119.99919 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46835 * 174.99958 * 12 2 1 31 31 H 1.09005 * 109.46533 * 55.00465 * 12 2 1 32 32 H 1.09003 * 110.75620 * 274.93447 * 18 16 15 33 33 H 1.08999 * 110.76037 * 38.30304 * 18 16 15 34 34 H 1.09003 * 110.52067 * 203.49008 * 19 18 16 35 35 H 1.08996 * 110.48389 * 80.95059 * 19 18 16 36 36 H 1.08999 * 110.03373 * 264.23350 * 20 19 18 37 37 H 1.09001 * 110.07057 * 142.82485 * 20 19 18 38 38 H 1.08996 * 109.47510 * 177.18946 * 23 21 20 39 39 H 1.09004 * 109.47150 * 297.19282 * 23 21 20 40 40 H 1.08997 * 109.47397 * 57.18803 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3450 -2.1616 -4.4124 10 1 2.4874 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7118 12 6 2.0399 -0.7212 1.2493 13 6 1.6412 0.0571 2.4766 14 7 0.5344 -0.0840 3.1654 15 6 0.6124 0.8135 4.1640 16 6 -0.4199 1.0461 5.2369 17 1 -1.2623 0.3664 5.1083 18 6 0.2090 0.8702 6.6415 19 6 -0.7357 1.7045 7.5443 20 6 -1.1013 2.9305 6.6822 21 6 -0.9006 2.5118 5.2152 22 1 -1.8430 2.5877 4.6729 23 6 0.1561 3.4001 4.5555 24 7 1.7416 1.4434 4.0337 25 8 2.3477 1.0236 3.0704 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7082 1.1608 -3.4845 30 1 3.1262 -0.7994 1.2057 31 1 1.6053 -1.7198 1.2952 32 1 0.2039 -0.1785 6.9384 33 1 1.2209 1.2745 6.6650 34 1 -0.2193 2.0168 8.4520 35 1 -1.6296 1.1324 7.7925 36 1 -0.4455 3.7666 6.9250 37 1 -2.1410 3.2103 6.8517 38 1 0.3266 3.0637 3.5328 39 1 -0.1925 4.4328 4.5450 40 1 1.0871 3.3367 5.1187 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395121636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:10 Heat of formation + Delta-G solvation = 42.884324 kcal Electronic energy + Delta-G solvation = -20335.662495 eV Core-core repulsion = 17345.848559 eV Total energy + Delta-G solvation = -2989.813935 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.05039 -38.93005 -35.77859 -34.78050 -32.60281 -31.22159 -30.57487 -28.92388 -26.61133 -25.47470 -25.13948 -23.32835 -22.15329 -20.70193 -20.01845 -18.77044 -17.54526 -16.88446 -16.37237 -15.88739 -15.27351 -14.65745 -14.20440 -13.73025 -13.62734 -13.20204 -12.88911 -12.73337 -12.54506 -12.08206 -11.84725 -11.59103 -11.31200 -11.27651 -11.18266 -10.97260 -10.87180 -10.67501 -10.65153 -10.63864 -10.52349 -10.36642 -10.15886 -9.88539 -9.85278 -9.01140 -8.92293 -8.40228 -6.04978 -4.13499 1.70554 2.73178 3.28612 3.35458 3.37444 3.46600 3.95623 4.32793 4.40104 4.48803 4.68007 4.76697 5.19145 5.24946 5.26454 5.29881 5.37825 5.47585 5.51898 5.68308 5.72941 5.81978 5.90260 6.00762 6.03841 6.05486 6.18855 6.20430 6.24051 6.27787 6.45336 6.54558 6.59507 6.93151 7.14764 7.26508 7.64413 7.85428 8.06524 8.30989 8.71125 8.88954 9.52063 11.01067 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.044279 B = 0.004082 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.207433 B = 6857.385040 C = 7055.075733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.050 3.950 3 H 0.031 0.969 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C -0.026 4.026 13 C 0.213 3.787 14 N -0.493 5.493 15 C 0.173 3.827 16 C 0.002 3.998 17 H 0.101 0.899 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.088 4.088 22 H 0.076 0.924 23 C -0.143 4.143 24 N -0.391 5.391 25 O 0.062 5.938 26 H 0.010 0.990 27 H 0.082 0.918 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 1.793 16.520 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.031 3.969 3 H 0.049 0.951 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.066 4.066 13 C -0.006 4.006 14 N -0.226 5.226 15 C -0.100 4.100 16 C -0.018 4.018 17 H 0.119 0.881 18 C -0.152 4.152 19 C -0.160 4.160 20 C -0.155 4.155 21 C -0.108 4.108 22 H 0.094 0.906 23 C -0.200 4.200 24 N -0.103 5.103 25 O 0.007 5.993 26 H 0.029 0.971 27 H 0.100 0.900 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.717 2.362 17.007 17.384 hybrid contribution 0.285 -0.473 -1.149 1.275 sum -2.432 1.889 15.858 16.154 Atomic orbital electron populations 1.21815 0.97886 0.99468 1.00251 1.18721 0.93458 0.95901 0.88860 0.95101 1.21035 1.31813 1.12702 0.90029 0.92149 1.24947 0.94902 0.94903 0.99080 1.69901 1.36309 1.22750 1.23530 0.86542 0.79274 0.79350 0.82524 1.20640 1.21241 1.19778 1.20808 1.02195 0.97426 0.86133 1.29474 0.85901 0.88592 0.96617 1.71951 1.20900 1.23469 1.06309 1.25454 0.94703 0.92259 0.97542 1.20422 0.93730 0.98060 0.89613 0.88065 1.22592 0.99555 1.00402 0.92684 1.22353 0.99231 0.96431 0.97946 1.22215 1.01445 0.98140 0.93708 1.21729 0.99340 0.93134 0.96552 0.90576 1.22038 0.98659 0.98356 1.00948 1.74645 1.09255 1.21177 1.05189 1.85276 1.42226 1.41545 1.30285 0.97093 0.89973 0.95198 0.92871 0.89276 0.88449 0.91131 0.90771 0.91411 0.91380 0.91405 0.91618 0.92908 0.93027 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.78 37.16 0.33 -2.99 16 2 C 0.05 1.21 2.29 -91.77 -0.21 1.00 16 3 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.52 -13.48 8.56 -34.44 -0.29 -13.78 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 12 C -0.03 -0.52 5.26 -27.89 -0.15 -0.66 16 13 C 0.21 4.12 6.97 -13.06 -0.09 4.03 16 14 N -0.49 -9.49 10.87 -9.87 -0.11 -9.60 16 15 C 0.17 2.97 5.82 -156.37 -0.91 2.06 16 16 C 0.00 0.02 3.31 -90.11 -0.30 -0.27 16 17 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 18 C -0.11 -1.27 6.33 -24.66 -0.16 -1.42 16 19 C -0.12 -1.08 6.83 -24.99 -0.17 -1.25 16 20 C -0.12 -1.11 6.46 -25.61 -0.17 -1.28 16 21 C -0.09 -1.07 3.42 -89.50 -0.31 -1.38 16 22 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 23 C -0.14 -1.98 7.45 37.16 0.28 -1.70 16 24 N -0.39 -6.99 8.92 30.90 0.28 -6.71 16 25 O 0.06 1.17 11.31 18.10 0.20 1.38 16 26 H 0.01 0.24 6.85 -51.93 -0.36 -0.12 16 27 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 30 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.91 7.94 -51.93 -0.41 0.50 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.89 6.45 -51.93 -0.33 0.56 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.97 7.23 -51.93 -0.38 0.60 16 LS Contribution 317.88 15.07 4.79 4.79 Total: -1.00 -28.14 317.88 -7.85 -36.00 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.38 Total: -1.10 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -2.24 Total: -16.04 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.80 Total: -40.60 kcal Atomic # 8 Polarization: 1.17 SS G_CDS: 0.20 Total: 1.38 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.14 -7.85 -36.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395121636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.880 kcal (2) G-P(sol) polarization free energy of solvation -28.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds