Wall clock time and date at job start Mon Mar 30 2020 06:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47161 * 2 1 4 4 N 1.30175 * 126.80567 * 270.02637 * 3 2 1 5 5 O 1.20912 * 111.60741 * 179.97438 * 4 3 2 6 6 C 1.34047 * 111.56828 * 359.76124 * 5 4 3 7 7 C 1.35449 * 106.44054 * 0.38078 * 6 5 4 8 8 C 1.50703 * 128.00250 * 179.90996 * 7 6 5 9 9 N 1.46894 * 109.47230 * 259.68013 * 8 7 6 10 10 C 1.46901 * 111.00108 * 180.02562 * 9 8 7 11 11 H 1.08998 * 110.05278 * 326.40717 * 10 9 8 12 12 C 1.53876 * 110.03578 * 87.83115 * 10 9 8 13 13 C 1.54268 * 106.59607 * 119.28576 * 12 10 9 14 14 C 1.54882 * 104.19992 * 23.60931 * 13 12 10 15 15 H 1.09004 * 110.75771 * 80.36858 * 14 13 12 16 16 C 1.50694 * 110.75918 * 203.74378 * 14 13 12 17 17 H 1.08002 * 120.00343 * 113.33094 * 16 14 13 18 18 C 1.37884 * 119.99869 * 293.32699 * 16 14 13 19 19 N 1.31509 * 119.99758 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 120.00064 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46856 * 90.00024 * 20 18 16 22 22 H 1.48497 * 109.47307 * 210.00030 * 20 18 16 23 23 H 1.48499 * 109.47027 * 330.00540 * 20 18 16 24 24 C 1.54268 * 110.02909 * 204.99960 * 10 9 8 25 25 H 1.08996 * 109.47385 * 300.00093 * 1 2 3 26 26 H 1.08999 * 109.47127 * 59.99988 * 1 2 3 27 27 H 1.08997 * 109.47366 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46967 * 240.00441 * 2 1 3 29 29 H 1.08999 * 109.47127 * 120.00012 * 2 1 3 30 30 H 1.07995 * 126.77548 * 180.28647 * 6 5 4 31 31 H 1.09002 * 109.47291 * 139.67766 * 8 7 6 32 32 H 1.09000 * 109.47406 * 19.68107 * 8 7 6 33 33 H 1.00899 * 111.00054 * 56.04641 * 9 8 7 34 34 H 1.08994 * 110.02975 * 238.56816 * 12 10 9 35 35 H 1.09000 * 110.03018 * 359.95500 * 12 10 9 36 36 H 1.09003 * 110.48471 * 264.93239 * 13 12 10 37 37 H 1.09004 * 110.48268 * 142.29006 * 13 12 10 38 38 H 0.97007 * 119.99881 * 179.97438 * 19 18 16 39 39 H 1.08999 * 110.49069 * 98.42729 * 24 10 9 40 40 H 1.08999 * 110.60474 * 335.83556 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2919 2.1563 -1.0423 5 8 2.6805 3.2565 -0.7253 6 6 2.7253 3.3984 0.6069 7 6 2.3145 2.2193 1.1320 8 6 2.1826 1.8471 2.5864 9 7 3.3482 1.0526 2.9962 10 6 3.2535 0.6703 4.4114 11 1 2.7556 1.4568 4.9785 12 6 2.4777 -0.6513 4.5498 13 6 3.4425 -1.6623 5.2032 14 6 4.4691 -0.7777 5.9531 15 1 4.0641 -0.4400 6.9071 16 6 5.7662 -1.5180 6.1539 17 1 6.6611 -1.1865 5.6484 18 6 5.8105 -2.6187 6.9832 19 7 4.7206 -3.0227 7.5984 20 14 7.4181 -3.5369 7.2316 21 1 8.1504 -2.9503 8.3827 22 1 7.1335 -4.9687 7.5038 23 1 8.2486 -3.4215 6.0059 24 6 4.6627 0.4163 4.9855 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0304 4.2784 1.1535 31 1 1.2747 1.2614 2.7307 32 1 2.1301 2.7532 3.1901 33 1 4.2071 1.5491 2.8121 34 1 1.6032 -0.5063 5.1840 35 1 2.1707 -1.0087 3.5668 36 1 3.9404 -2.2618 4.4410 37 1 2.9068 -2.3027 5.9040 38 1 4.7517 -3.7973 8.1816 39 1 5.0176 1.2928 5.5276 40 1 5.3594 0.1532 4.1896 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449445527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:40 Heat of formation + Delta-G solvation = 37.777599 kcal Electronic energy + Delta-G solvation = -19893.932967 eV Core-core repulsion = 16903.897588 eV Total energy + Delta-G solvation = -2990.035379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.95917 -37.98922 -35.98453 -34.30009 -32.53484 -31.37359 -31.09691 -28.09844 -27.43674 -25.02832 -24.38244 -23.51123 -21.38869 -20.93702 -19.32065 -18.97510 -17.59447 -17.41427 -16.42242 -15.62276 -15.14950 -14.61236 -14.46911 -14.46685 -14.02627 -13.49618 -13.35156 -12.77569 -12.66439 -12.30160 -11.92687 -11.72128 -11.59676 -11.52724 -11.01095 -10.89730 -10.81648 -10.56334 -10.49405 -10.11103 -9.93276 -9.86526 -9.54112 -9.47761 -9.09342 -8.76889 -8.33472 -8.14614 -5.98067 -4.00180 1.43178 2.17403 3.19976 3.32245 3.39223 3.42646 4.09039 4.44444 4.47490 4.60203 4.80529 5.02579 5.18580 5.22206 5.30869 5.34633 5.46276 5.50394 5.63011 5.71510 5.75595 5.84409 5.92878 5.94714 6.01825 6.20054 6.31187 6.48503 6.63046 6.76831 6.88117 7.00150 7.14872 7.35349 7.52554 7.62835 7.76463 7.93180 8.06279 8.24220 8.48919 9.02270 9.63603 11.11745 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.030328 B = 0.003879 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.019303 B = 7217.502391 C = 7438.175890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C 0.043 3.957 4 N -0.373 5.373 5 O 0.093 5.907 6 C -0.064 4.064 7 C -0.187 4.187 8 C 0.134 3.866 9 N -0.676 5.676 10 C 0.084 3.916 11 H 0.035 0.965 12 C -0.116 4.116 13 C -0.099 4.099 14 C 0.052 3.948 15 H 0.030 0.970 16 C -0.512 4.512 17 H 0.054 0.946 18 C 0.063 3.937 19 N -0.891 5.891 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.119 4.119 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.213 0.787 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.338 0.662 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.259 0.741 39 H 0.043 0.957 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 10.656 -11.604 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.117 4.117 4 N -0.078 5.078 5 O 0.029 5.971 6 C -0.146 4.146 7 C -0.191 4.191 8 C 0.004 3.996 9 N -0.308 5.308 10 C -0.025 4.025 11 H 0.053 0.947 12 C -0.154 4.154 13 C -0.138 4.138 14 C 0.034 3.966 15 H 0.049 0.951 16 C -0.550 4.550 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.157 4.157 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.229 0.771 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.156 0.844 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.989 9.734 -13.030 18.121 hybrid contribution 1.070 0.355 1.513 1.886 sum -6.919 10.089 -11.518 16.802 Atomic orbital electron populations 1.21700 0.94262 1.02293 1.01932 1.19990 0.95979 0.88235 1.04534 1.23492 1.01010 0.99106 0.88049 1.73819 1.16752 0.92884 1.24369 1.84800 1.62534 1.26835 1.22922 1.25787 1.03753 1.01209 0.83839 1.21307 1.06474 0.93539 0.97830 1.20168 0.96198 0.96101 0.87094 1.60699 1.03533 1.45559 1.21027 1.22322 0.98373 0.96576 0.85242 0.94725 1.22285 0.97866 0.95531 0.99757 1.22272 0.96296 0.97009 0.98199 1.19519 0.94548 0.89941 0.92630 0.95141 1.21126 0.94889 1.11994 1.26991 0.92766 1.24967 0.96041 0.97247 0.95619 1.69958 1.27116 1.25687 1.30149 0.86665 0.84191 0.79109 0.78446 1.20799 1.21298 1.19942 1.22665 0.93532 0.99857 0.99641 0.92421 0.92890 0.91596 0.90438 0.88249 0.77072 0.89759 0.94332 0.84393 0.93740 0.92431 0.93408 0.91991 0.93142 0.93838 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.05 -0.57 6.44 -27.88 -0.18 -0.75 16 3 C 0.04 0.55 6.58 -82.10 -0.54 0.01 16 4 N -0.37 -5.12 12.07 33.42 0.40 -4.72 16 5 O 0.09 1.12 11.20 17.16 0.19 1.31 16 6 C -0.06 -0.62 12.26 29.74 0.36 -0.26 16 7 C -0.19 -2.17 5.84 -104.42 -0.61 -2.78 16 8 C 0.13 1.58 6.00 -4.98 -0.03 1.55 16 9 N -0.68 -9.63 6.15 -106.81 -0.66 -10.29 16 10 C 0.08 1.40 3.25 -66.59 -0.22 1.18 16 11 H 0.03 0.55 7.81 -51.93 -0.41 0.15 16 12 C -0.12 -2.13 6.55 -25.61 -0.17 -2.29 16 13 C -0.10 -2.28 5.75 -25.07 -0.14 -2.42 16 14 C 0.05 1.28 2.73 -89.78 -0.24 1.03 16 15 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 16 C -0.51 -13.95 8.49 -34.44 -0.29 -14.24 16 17 H 0.05 1.46 7.77 -52.49 -0.41 1.06 16 18 C 0.06 1.74 5.36 -17.82 -0.10 1.64 16 19 N -0.89 -25.53 12.41 55.43 0.69 -24.85 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.12 -2.35 5.66 -25.07 -0.14 -2.49 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.21 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.04 0.41 8.07 -51.93 -0.42 -0.01 16 33 H 0.34 4.63 8.31 -39.29 -0.33 4.30 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.00 7.92 -51.93 -0.41 0.59 16 36 H 0.05 1.15 8.04 -51.93 -0.42 0.73 16 37 H 0.06 1.55 7.63 -51.93 -0.40 1.15 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.30 7.85 -51.93 -0.41 0.90 16 LS Contribution 330.56 15.07 4.98 4.98 Total: -1.00 -29.38 330.56 -7.90 -37.28 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.55 Total: 0.90 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -1.93 Total: -20.87 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.43 Total: -39.85 kcal Atomic # 8 Polarization: 1.12 SS G_CDS: 0.19 Total: 1.31 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.38 -7.90 -37.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.058 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds