Wall clock time and date at job start Mon Mar 30 2020 06:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47161 * 2 1 4 4 N 1.30175 * 126.80567 * 270.02637 * 3 2 1 5 5 O 1.20912 * 111.60741 * 179.97438 * 4 3 2 6 6 C 1.34047 * 111.56828 * 359.76124 * 5 4 3 7 7 C 1.35449 * 106.44054 * 0.38078 * 6 5 4 8 8 C 1.50703 * 128.00250 * 179.90996 * 7 6 5 9 9 N 1.46894 * 109.47230 * 259.68013 * 8 7 6 10 10 C 1.46901 * 111.00108 * 180.02562 * 9 8 7 11 11 H 1.08998 * 110.05278 * 326.40717 * 10 9 8 12 12 C 1.53876 * 110.03578 * 87.83115 * 10 9 8 13 13 C 1.54268 * 106.59607 * 119.28576 * 12 10 9 14 14 C 1.54882 * 104.19992 * 23.60931 * 13 12 10 15 15 H 1.09004 * 110.75771 * 80.36858 * 14 13 12 16 16 C 1.50694 * 110.75918 * 203.74378 * 14 13 12 17 17 H 1.08002 * 120.00343 * 113.33094 * 16 14 13 18 18 C 1.37884 * 119.99869 * 293.32699 * 16 14 13 19 19 N 1.31509 * 119.99758 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 120.00064 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46856 * 90.00024 * 20 18 16 22 22 H 1.48497 * 109.47307 * 210.00030 * 20 18 16 23 23 H 1.48499 * 109.47027 * 330.00540 * 20 18 16 24 24 C 1.54268 * 110.02909 * 204.99960 * 10 9 8 25 25 H 1.08996 * 109.47385 * 300.00093 * 1 2 3 26 26 H 1.08999 * 109.47127 * 59.99988 * 1 2 3 27 27 H 1.08997 * 109.47366 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46967 * 240.00441 * 2 1 3 29 29 H 1.08999 * 109.47127 * 120.00012 * 2 1 3 30 30 H 1.07995 * 126.77548 * 180.28647 * 6 5 4 31 31 H 1.09002 * 109.47291 * 139.67766 * 8 7 6 32 32 H 1.09000 * 109.47406 * 19.68107 * 8 7 6 33 33 H 1.00899 * 111.00054 * 56.04641 * 9 8 7 34 34 H 1.08994 * 110.02975 * 238.56816 * 12 10 9 35 35 H 1.09000 * 110.03018 * 359.95500 * 12 10 9 36 36 H 1.09003 * 110.48471 * 264.93239 * 13 12 10 37 37 H 1.09004 * 110.48268 * 142.29006 * 13 12 10 38 38 H 0.97007 * 119.99881 * 179.97438 * 19 18 16 39 39 H 1.08999 * 110.49069 * 98.42729 * 24 10 9 40 40 H 1.08999 * 110.60474 * 335.83556 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2919 2.1563 -1.0423 5 8 2.6805 3.2565 -0.7253 6 6 2.7253 3.3984 0.6069 7 6 2.3145 2.2193 1.1320 8 6 2.1826 1.8471 2.5864 9 7 3.3482 1.0526 2.9962 10 6 3.2535 0.6703 4.4114 11 1 2.7556 1.4568 4.9785 12 6 2.4777 -0.6513 4.5498 13 6 3.4425 -1.6623 5.2032 14 6 4.4691 -0.7777 5.9531 15 1 4.0641 -0.4400 6.9071 16 6 5.7662 -1.5180 6.1539 17 1 6.6611 -1.1865 5.6484 18 6 5.8105 -2.6187 6.9832 19 7 4.7206 -3.0227 7.5984 20 14 7.4181 -3.5369 7.2316 21 1 8.1504 -2.9503 8.3827 22 1 7.1335 -4.9687 7.5038 23 1 8.2486 -3.4215 6.0059 24 6 4.6627 0.4163 4.9855 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0304 4.2784 1.1535 31 1 1.2747 1.2614 2.7307 32 1 2.1301 2.7532 3.1901 33 1 4.2071 1.5491 2.8121 34 1 1.6032 -0.5063 5.1840 35 1 2.1707 -1.0087 3.5668 36 1 3.9404 -2.2618 4.4410 37 1 2.9068 -2.3027 5.9040 38 1 4.7517 -3.7973 8.1816 39 1 5.0176 1.2928 5.5276 40 1 5.3594 0.1532 4.1896 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449445527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:40 Heat of formation + Delta-G solvation = 20.454941 kcal Electronic energy + Delta-G solvation = -19894.684134 eV Core-core repulsion = 16903.897588 eV Total energy + Delta-G solvation = -2990.786546 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.86146 -39.42903 -37.06132 -35.56207 -34.19758 -32.61334 -31.99292 -29.84462 -28.83820 -26.42114 -25.38496 -25.09729 -22.33989 -21.78223 -21.06421 -20.50422 -18.53428 -18.41778 -18.24802 -16.87765 -16.56824 -16.35297 -15.54698 -15.46930 -15.26236 -14.65282 -14.39131 -14.24250 -13.91660 -13.57666 -13.45363 -13.00676 -12.92366 -12.70540 -12.51429 -12.39482 -12.35714 -11.98785 -11.81566 -11.71689 -11.51724 -11.29617 -10.98350 -10.78669 -10.76570 -10.42516 -10.38324 -9.26083 -8.09580 -6.18237 0.62356 1.26542 1.41412 1.42715 1.52487 2.44759 2.45680 3.19277 3.21784 3.46682 3.67121 3.95986 4.05616 4.09707 4.23060 4.36534 4.39295 4.42647 4.48677 4.66229 4.79802 4.83922 4.86761 4.91322 5.03126 5.03956 5.12772 5.17310 5.22994 5.23721 5.33631 5.35614 5.43848 5.52706 5.69131 5.94016 6.04475 6.27743 6.43427 6.54984 6.92923 7.39216 7.48877 8.99504 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.030328 B = 0.003879 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.019303 B = 7217.502391 C = 7438.175890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.030 3.970 4 N -0.402 5.402 5 O 0.087 5.913 6 C -0.040 4.040 7 C -0.206 4.206 8 C 0.140 3.860 9 N -0.682 5.682 10 C 0.099 3.901 11 H 0.053 0.947 12 C -0.106 4.106 13 C -0.092 4.092 14 C 0.040 3.960 15 H 0.002 0.998 16 C -0.530 4.530 17 H 0.051 0.949 18 C 0.012 3.988 19 N -0.920 5.920 20 Si 0.950 3.050 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.269 1.269 24 C -0.108 4.108 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.256 0.744 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.344 0.656 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.031 0.969 38 H 0.259 0.741 39 H 0.054 0.946 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.550 12.259 -12.172 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 C -0.129 4.129 4 N -0.109 5.109 5 O 0.024 5.976 6 C -0.121 4.121 7 C -0.210 4.210 8 C 0.011 3.989 9 N -0.315 5.315 10 C -0.010 4.010 11 H 0.071 0.929 12 C -0.144 4.144 13 C -0.131 4.131 14 C 0.021 3.979 15 H 0.020 0.980 16 C -0.568 4.568 17 H 0.069 0.931 18 C -0.186 4.186 19 N -0.560 5.560 20 Si 0.775 3.225 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.194 1.194 24 C -0.146 4.146 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.272 0.728 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.163 0.837 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.946 11.355 -13.615 19.428 hybrid contribution 1.070 -0.115 1.690 2.003 sum -6.876 11.241 -11.925 17.772 Atomic orbital electron populations 1.21656 0.93007 1.03050 1.01855 1.19993 0.97067 0.87838 1.03857 1.23789 1.00956 0.99595 0.88603 1.73823 1.18218 0.93681 1.25225 1.84768 1.62348 1.26267 1.24167 1.26547 1.00963 1.01798 0.82840 1.21321 1.08105 0.94213 0.97402 1.20133 0.94767 0.96584 0.87394 1.60564 1.04862 1.46999 1.19033 1.22009 0.95839 0.96146 0.86981 0.92928 1.22175 0.97178 0.95114 0.99952 1.22062 0.96680 0.97311 0.97035 1.19520 0.93701 0.92027 0.92655 0.98007 1.21533 0.96014 1.12428 1.26848 0.93068 1.25733 0.99151 0.98203 0.95543 1.70083 1.28973 1.26142 1.30806 0.85687 0.80436 0.77778 0.78552 1.20077 1.21087 1.19375 1.22480 0.95606 0.98128 0.98429 0.92226 0.93143 0.90450 0.90791 0.89159 0.72838 0.90037 0.92072 0.83739 0.92629 0.91339 0.95432 0.95018 0.93204 0.92732 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.89 71.98 0.71 -1.83 16 2 C -0.05 -1.10 6.44 29.85 0.19 -0.91 16 3 C 0.03 0.72 6.58 43.58 0.29 1.01 16 4 N -0.40 -10.59 12.07 -49.57 -0.60 -11.19 16 5 O 0.09 1.90 11.20 71.58 0.80 2.70 16 6 C -0.04 -0.64 12.26 67.17 0.82 0.19 16 7 C -0.21 -4.23 5.84 -19.74 -0.12 -4.34 16 8 C 0.14 2.84 6.00 85.56 0.51 3.35 16 9 N -0.68 -17.58 6.15 -491.83 -3.03 -20.61 16 10 C 0.10 3.10 3.25 45.64 0.15 3.24 16 11 H 0.05 1.49 7.81 -2.39 -0.02 1.47 16 12 C -0.11 -3.75 6.55 31.32 0.21 -3.55 16 13 C -0.09 -4.32 5.75 31.67 0.18 -4.14 16 14 C 0.04 1.97 2.73 -10.25 -0.03 1.94 16 15 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 16 C -0.53 -29.33 8.49 25.60 0.22 -29.11 16 17 H 0.05 2.79 7.77 -2.91 -0.02 2.76 16 18 C 0.01 0.68 5.36 84.66 0.45 1.14 16 19 N -0.92 -54.02 12.41 21.45 0.27 -53.75 16 20 Si 0.95 44.00 29.54 68.60 2.03 46.02 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C -0.11 -4.17 5.66 31.67 0.18 -3.99 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.26 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.01 8.07 -2.39 -0.02 0.99 16 33 H 0.34 8.39 8.31 -89.69 -0.75 7.65 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 2.28 7.92 -2.39 -0.02 2.26 16 36 H 0.03 1.35 8.04 -2.39 -0.02 1.33 16 37 H 0.03 1.63 7.63 -2.39 -0.02 1.61 16 38 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 2.28 7.85 -2.39 -0.02 2.26 16 Total: -1.00 -64.67 330.56 3.51 -61.15 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.27 Total: 12.66 kcal Atomic # 6 Polarization: -40.76 SS G_CDS: 3.77 Total: -36.99 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -3.36 Total: -85.55 kcal Atomic # 8 Polarization: 1.90 SS G_CDS: 0.80 Total: 2.70 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -64.67 3.51 -61.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.609 kcal (2) G-P(sol) polarization free energy of solvation -64.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds