Wall clock time and date at job start Mon Mar 30 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38251 * 119.55278 * 2 1 4 4 C 1.38538 * 119.22043 * 180.02562 * 3 2 1 5 5 C 1.39139 * 118.37423 * 359.97438 * 4 3 2 6 6 O 1.35912 * 120.47319 * 180.02562 * 5 4 3 7 7 C 1.38707 * 119.05145 * 359.97438 * 5 4 3 8 8 C 1.50703 * 119.65846 * 180.30195 * 7 5 4 9 9 N 1.46904 * 109.46743 * 269.72721 * 8 7 5 10 10 C 1.46897 * 110.99890 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47267 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47281 * 300.00123 * 11 10 9 13 13 C 1.53003 * 109.46803 * 59.99991 * 11 10 9 14 14 C 1.50703 * 109.47372 * 179.97438 * 11 10 9 15 15 H 1.07993 * 119.99661 * 0.02562 * 14 11 10 16 16 C 1.37873 * 119.99986 * 179.97438 * 14 11 10 17 17 N 1.31508 * 120.00316 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99768 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47040 * 60.00423 * 18 16 14 20 20 H 1.48508 * 109.47089 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47522 * 300.00034 * 18 16 14 22 22 N 1.31839 * 119.55741 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.46984 * 270.01964 * 1 2 3 24 24 H 1.09000 * 109.47349 * 30.01973 * 1 2 3 25 25 H 1.09005 * 109.47224 * 150.02633 * 1 2 3 26 26 H 1.07997 * 120.39388 * 359.97438 * 3 2 1 27 27 H 1.08005 * 120.81504 * 179.97438 * 4 3 2 28 28 H 0.96701 * 113.99706 * 269.95493 * 6 5 4 29 29 H 1.09001 * 109.47147 * 29.71962 * 8 7 5 30 30 H 1.08995 * 109.47516 * 149.72813 * 8 7 5 31 31 H 1.00906 * 110.99797 * 303.94803 * 9 8 7 32 32 H 1.09004 * 109.47416 * 299.99860 * 10 9 8 33 33 H 1.09002 * 109.47318 * 59.99878 * 10 9 8 34 34 H 1.09006 * 109.47063 * 59.99986 * 12 11 10 35 35 H 1.08996 * 109.47372 * 179.97438 * 12 11 10 36 36 H 1.08995 * 109.47143 * 299.99975 * 12 11 10 37 37 H 1.09004 * 109.46924 * 60.00336 * 13 11 10 38 38 H 1.09009 * 109.46978 * 179.97438 * 13 11 10 39 39 H 1.08997 * 109.47180 * 299.99811 * 13 11 10 40 40 H 0.96998 * 120.00606 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1889 1.2026 0.0000 4 6 3.5742 1.1946 -0.0005 5 6 4.2284 -0.0334 -0.0005 6 8 5.5863 -0.0911 -0.0005 7 6 3.4748 -1.1980 0.0006 8 6 4.1691 -2.5355 0.0075 9 7 4.3939 -2.9776 -1.3753 10 6 5.0710 -4.2808 -1.4078 11 6 5.2867 -4.7074 -2.8611 12 6 3.9335 -4.8180 -3.5664 13 6 6.1504 -3.6659 -3.5754 14 6 5.9819 -6.0441 -2.8945 15 1 6.2433 -6.5399 -1.9714 16 6 6.2832 -6.6344 -4.1035 17 7 5.9644 -6.0309 -5.2276 18 14 7.1442 -8.2916 -4.1448 19 1 6.3061 -9.3023 -3.4511 20 1 7.3526 -8.7062 -5.5555 21 1 8.4579 -8.1841 -3.4608 22 7 2.1574 -1.1468 0.0005 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8903 -0.5134 26 1 1.6480 2.1374 -0.0004 27 1 4.1329 2.1190 -0.0010 28 1 5.9791 -0.1085 -0.8839 29 1 5.1268 -2.4451 0.5202 30 1 3.5470 -3.2652 0.5257 31 1 3.5270 -3.0072 -1.8908 32 1 6.0349 -4.2022 -0.9050 33 1 4.4555 -5.0229 -0.8992 34 1 3.4310 -3.8510 -3.5423 35 1 4.0871 -5.1215 -4.6019 36 1 3.3181 -5.5599 -3.0575 37 1 7.1146 -3.5872 -3.0730 38 1 6.3045 -3.9701 -4.6108 39 1 5.6480 -2.6990 -3.5514 40 1 6.1767 -6.4460 -6.0782 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459731326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:26 Heat of formation + Delta-G solvation = -17.662977 kcal Electronic energy + Delta-G solvation = -20009.451543 eV Core-core repulsion = 17017.012080 eV Total energy + Delta-G solvation = -2992.439463 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.58525 -37.30167 -36.89110 -34.33236 -32.28260 -31.98908 -30.63453 -27.58349 -25.77577 -25.54333 -25.17312 -23.35360 -22.36577 -21.46177 -18.45977 -18.38779 -16.93845 -16.11803 -15.80773 -15.40291 -14.80057 -14.46668 -14.43586 -13.82278 -13.66156 -13.35431 -12.94261 -12.55384 -12.38772 -12.24567 -12.11346 -12.03873 -11.66666 -11.15943 -11.10686 -10.95321 -10.63690 -10.59818 -10.16091 -10.05758 -9.83368 -9.41116 -9.35416 -9.05903 -8.65546 -8.57814 -8.27229 -7.73251 -5.89474 -3.99844 0.96420 1.16555 3.34422 3.38994 3.41802 3.53539 4.07133 4.29665 4.46225 4.61918 4.67505 4.97002 5.10731 5.33351 5.36022 5.39963 5.46273 5.53582 5.70369 5.83927 5.96102 6.01260 6.18898 6.34738 6.42881 6.54561 6.73556 6.91328 7.08665 7.19058 7.36523 7.46232 7.60339 7.70829 7.77192 7.83355 7.93053 8.01807 8.22369 8.35270 8.57271 9.01264 9.65051 11.11067 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.033686 B = 0.004115 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.003758 B = 6802.194975 C = 7114.654252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.114 3.886 3 C -0.163 4.163 4 C -0.104 4.104 5 C 0.072 3.928 6 O -0.489 6.489 7 C 0.125 3.875 8 C 0.106 3.894 9 N -0.680 5.680 10 C 0.076 3.924 11 C 0.069 3.931 12 C -0.132 4.132 13 C -0.118 4.118 14 C -0.507 4.507 15 H 0.052 0.948 16 C 0.066 3.934 17 N -0.885 5.885 18 Si 0.889 3.111 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.278 1.278 22 N -0.466 5.466 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.135 0.865 27 H 0.138 0.862 28 H 0.399 0.601 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.340 0.660 32 H 0.058 0.942 33 H 0.015 0.985 34 H 0.010 0.990 35 H 0.083 0.917 36 H 0.019 0.981 37 H 0.018 0.982 38 H 0.074 0.926 39 H 0.018 0.982 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.286 14.206 8.594 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.023 4.023 3 C -0.183 4.183 4 C -0.130 4.130 5 C 0.025 3.975 6 O -0.299 6.299 7 C -0.015 4.015 8 C -0.024 4.024 9 N -0.312 5.312 10 C -0.052 4.052 11 C 0.068 3.932 12 C -0.190 4.190 13 C -0.176 4.176 14 C -0.545 4.545 15 H 0.070 0.930 16 C -0.135 4.135 17 N -0.524 5.524 18 Si 0.717 3.283 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.204 1.204 22 N -0.178 5.178 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.152 0.848 27 H 0.156 0.844 28 H 0.256 0.744 29 H 0.108 0.892 30 H 0.060 0.940 31 H 0.160 0.840 32 H 0.077 0.923 33 H 0.034 0.966 34 H 0.028 0.972 35 H 0.102 0.898 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.092 0.908 39 H 0.037 0.963 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.193 13.753 8.927 17.905 hybrid contribution 0.366 -0.670 -0.244 0.802 sum -6.827 13.083 8.683 17.122 Atomic orbital electron populations 1.20683 0.88804 1.03501 1.02892 1.21260 0.97067 0.88205 0.95812 1.21830 0.94074 0.99266 1.03148 1.21898 0.94753 0.98105 0.98283 1.19199 0.84534 0.92302 1.01486 1.84723 1.14904 1.96011 1.34285 1.21718 0.88920 0.95856 0.94970 1.20766 0.98748 0.89961 0.92936 1.60687 1.28783 1.31806 1.09960 1.22183 0.96525 0.85839 1.00685 1.18093 0.92934 0.94055 0.88071 1.21831 0.96806 0.96087 1.04261 1.21633 0.97217 0.95873 1.02829 1.21068 1.37799 1.03463 0.92206 0.93008 1.24875 0.95680 0.97259 0.95715 1.69820 1.47362 1.38058 0.97164 0.86717 0.80169 0.84586 0.76811 1.20473 1.21390 1.20392 1.67370 1.08882 1.29364 1.12147 0.90594 0.90822 0.90359 0.84762 0.84436 0.74371 0.89234 0.93963 0.84043 0.92316 0.96629 0.97152 0.89847 0.96147 0.96243 0.90767 0.96323 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.17 36.01 0.37 -0.54 16 2 C 0.11 1.40 6.78 -82.58 -0.56 0.84 16 3 C -0.16 -1.71 9.73 -39.47 -0.38 -2.10 16 4 C -0.10 -1.18 10.13 -39.14 -0.40 -1.58 16 5 C 0.07 0.99 6.70 -39.07 -0.26 0.73 16 6 O -0.49 -6.36 12.57 -19.46 -0.24 -6.61 16 7 C 0.12 1.91 6.31 -82.41 -0.52 1.39 16 8 C 0.11 1.72 5.76 -4.97 -0.03 1.69 16 9 N -0.68 -12.43 5.70 -115.06 -0.66 -13.09 16 10 C 0.08 1.60 4.59 -3.83 -0.02 1.58 16 11 C 0.07 1.67 0.57 -155.66 -0.09 1.59 16 12 C -0.13 -3.17 7.92 37.16 0.29 -2.88 16 13 C -0.12 -2.84 8.09 37.16 0.30 -2.54 16 14 C -0.51 -13.67 8.01 -34.44 -0.28 -13.94 16 15 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 16 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 17 N -0.89 -24.54 9.35 55.43 0.52 -24.02 16 18 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 N -0.47 -7.04 10.18 -5.62 -0.06 -7.10 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 27 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 28 H 0.40 4.09 9.06 45.56 0.41 4.50 16 29 H 0.09 1.43 7.52 -51.93 -0.39 1.04 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.34 6.50 6.76 -39.29 -0.27 6.23 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 35 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 1.97 6.07 -51.92 -0.32 1.65 16 39 H 0.02 0.40 7.60 -51.93 -0.39 0.01 16 40 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -29.31 325.46 -7.59 -36.90 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.38 Total: 6.92 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -1.66 Total: -14.07 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.19 Total: -44.21 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.24 Total: -6.61 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.31 -7.59 -36.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459731326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.241 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds