Wall clock time and date at job start Mon Mar 30 2020 07:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47336 * 2 1 4 4 C 1.46500 * 119.99885 * 270.00290 * 3 2 1 5 5 C 1.50700 * 109.47252 * 269.99849 * 4 3 2 6 6 H 1.07997 * 120.00125 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00236 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99784 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00272 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47057 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47413 * 119.99894 * 9 7 5 12 12 H 1.48503 * 109.46851 * 239.99874 * 9 7 5 13 13 C 1.34777 * 119.99946 * 90.00085 * 3 2 1 14 14 O 1.21278 * 119.99916 * 180.02562 * 13 3 2 15 15 C 1.50698 * 119.99931 * 0.02562 * 13 3 2 16 16 C 1.52997 * 109.46933 * 179.97438 * 15 13 3 17 17 H 1.09001 * 109.47502 * 305.00351 * 16 15 13 18 18 C 1.53006 * 109.47127 * 65.00194 * 16 15 13 19 19 N 1.46500 * 109.47007 * 184.99975 * 16 15 13 20 20 C 1.36342 * 125.63529 * 299.69302 * 19 16 15 21 21 C 1.34855 * 108.21709 * 179.83229 * 20 19 16 22 22 C 1.40888 * 107.41813 * 0.42727 * 21 20 19 23 23 C 1.34850 * 107.41622 * 359.73240 * 22 21 20 24 24 H 1.09003 * 109.47170 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47026 * 300.00061 * 1 2 3 26 26 H 1.08996 * 109.47466 * 59.99489 * 1 2 3 27 27 H 1.09004 * 109.47026 * 239.99939 * 2 1 3 28 28 H 1.08996 * 109.47466 * 120.00511 * 2 1 3 29 29 H 1.09001 * 109.47381 * 29.99929 * 4 3 2 30 30 H 1.09009 * 109.47139 * 149.99884 * 4 3 2 31 31 H 0.96994 * 119.99946 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47172 * 60.00175 * 15 13 3 33 33 H 1.08998 * 109.47020 * 299.99696 * 15 13 3 34 34 H 1.09001 * 109.47002 * 299.99574 * 18 16 15 35 35 H 1.08993 * 109.46955 * 60.00011 * 18 16 15 36 36 H 1.09000 * 109.47050 * 179.97438 * 18 16 15 37 37 H 1.08002 * 125.89222 * 359.95776 * 20 19 16 38 38 H 1.08007 * 126.28947 * 180.16418 * 21 20 19 39 39 H 1.07994 * 126.29515 * 179.73538 * 22 21 20 40 40 H 1.08002 * 125.89108 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7039 6 1 4.3428 1.2309 -1.0959 7 6 4.1493 2.3904 -2.8776 8 7 3.3492 3.1265 -3.6177 9 14 5.9133 2.0963 -3.4173 10 1 6.6007 1.2403 -2.4173 11 1 5.9203 1.4182 -4.7383 12 1 6.6214 3.3972 -3.5249 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 6 2.3243 2.2431 3.6352 17 1 3.3460 2.6075 3.5279 18 6 1.3566 3.4282 3.6273 19 7 2.1955 1.5159 4.9004 20 6 1.0569 0.9282 5.3665 21 6 1.3341 0.3568 6.5562 22 6 2.6909 0.6092 6.8394 23 6 3.1928 1.3201 5.8093 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.5816 1.6877 -2.0284 30 1 2.0955 3.1411 -1.1384 31 1 3.6752 3.5170 -4.4435 32 1 2.6229 0.4186 2.5298 33 1 0.9445 1.0114 2.5302 34 1 1.4525 3.9693 2.6859 35 1 0.3350 3.0638 3.7346 36 1 1.5929 4.0957 4.4560 37 1 0.0989 0.9199 4.8679 38 1 0.6418 -0.1898 7.1795 39 1 3.2300 0.2916 7.7196 40 1 4.2094 1.6737 5.7198 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531409429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:06 Heat of formation + Delta-G solvation = 7.662138 kcal Electronic energy + Delta-G solvation = -20217.660879 eV Core-core repulsion = 17226.319595 eV Total energy + Delta-G solvation = -2991.341284 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.18343 -39.27293 -35.69324 -34.69120 -32.84003 -30.22472 -29.76559 -28.70397 -28.33589 -26.55038 -23.32722 -23.05923 -21.98619 -20.40417 -19.50106 -18.27798 -17.47654 -16.51864 -15.99180 -15.58532 -15.18131 -14.59298 -14.33644 -13.83712 -13.70174 -13.47212 -13.32293 -12.87580 -12.60404 -12.36828 -12.19901 -12.07087 -12.01763 -11.81523 -11.48282 -11.31610 -11.26514 -10.99049 -10.93260 -10.75215 -10.57022 -10.18129 -9.66945 -9.03081 -8.53643 -8.48452 -8.08685 -7.75333 -6.09571 -4.14471 2.37642 2.96461 3.12239 3.25993 3.26469 3.34355 3.38556 3.89592 4.40308 4.61651 4.88502 4.94600 5.12309 5.19226 5.25350 5.28938 5.34604 5.44217 5.54815 5.59078 5.64815 5.68961 5.75373 5.88213 5.96138 6.01885 6.16766 6.31553 6.34463 6.41170 6.42413 6.98462 7.07202 7.34301 7.37454 7.46224 7.48695 7.86549 8.17454 8.31781 8.82479 8.98312 9.50981 10.98558 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.025565 B = 0.004622 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.999048 B = 6056.998585 C = 6436.517017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.593 5.593 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.511 3.489 14 O -0.540 6.540 15 C -0.151 4.151 16 C 0.147 3.853 17 H 0.106 0.894 18 C -0.164 4.164 19 N -0.439 5.439 20 C -0.013 4.013 21 C -0.208 4.208 22 C -0.209 4.209 23 C -0.014 4.014 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.155 0.845 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.675 -6.320 14.564 16.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.324 5.324 4 C 0.127 3.873 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.296 3.704 14 O -0.419 6.419 15 C -0.191 4.191 16 C 0.045 3.955 17 H 0.124 0.876 18 C -0.221 4.221 19 N -0.114 5.114 20 C -0.143 4.143 21 C -0.233 4.233 22 C -0.233 4.233 23 C -0.144 4.144 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.173 0.827 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.433 -5.419 14.020 15.982 hybrid contribution 0.939 -0.330 -0.412 1.077 sum -4.494 -5.749 13.608 15.441 Atomic orbital electron populations 1.22211 0.96679 1.01521 1.02278 1.21443 0.93590 0.84133 1.02787 1.48253 1.63210 1.13272 1.07707 1.19298 0.96354 0.93640 0.78034 1.21456 0.96866 1.31927 1.06326 0.92455 1.24934 0.97881 0.94874 0.96371 1.69939 1.35610 1.33425 1.14335 0.86447 0.84576 0.78081 0.78349 1.19823 1.20924 1.20847 1.19959 0.78688 0.86849 0.84861 1.90649 1.46177 1.17959 1.87103 1.22062 1.03984 0.99785 0.93304 1.21172 1.02967 0.91402 0.79961 0.87563 1.22270 0.97905 0.97202 1.04761 1.44477 1.09073 1.41548 1.16288 1.21715 0.91489 1.03366 0.97765 1.20832 0.96758 1.07668 0.98049 1.20830 0.95711 1.06524 1.00267 1.21870 0.94345 1.06401 0.91808 0.92075 0.93150 0.91969 0.89838 0.91733 0.94963 0.93809 0.92733 0.88839 0.88926 0.88216 0.92651 0.92309 0.82723 0.85188 0.85157 0.82495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.10 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.59 -11.93 2.46 -175.06 -0.43 -12.36 16 4 C 0.25 6.22 5.16 -5.19 -0.03 6.19 16 5 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 9 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.51 9.84 7.39 -10.99 -0.08 9.76 16 14 O -0.54 -12.42 13.54 5.56 0.08 -12.35 16 15 C -0.15 -2.13 3.72 -27.89 -0.10 -2.23 16 16 C 0.15 2.01 2.67 -67.93 -0.18 1.83 16 17 H 0.11 1.57 7.88 -51.93 -0.41 1.16 16 18 C -0.16 -2.20 8.97 37.16 0.33 -1.87 16 19 N -0.44 -5.64 2.62 -110.02 -0.29 -5.93 16 20 C -0.01 -0.16 10.45 -16.75 -0.18 -0.33 16 21 C -0.21 -2.50 10.86 -39.78 -0.43 -2.93 16 22 C -0.21 -2.53 10.86 -39.78 -0.43 -2.97 16 23 C -0.01 -0.17 11.39 -16.75 -0.19 -0.36 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 28 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 29 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.04 1.25 7.42 -51.92 -0.39 0.86 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.09 1.27 7.40 -51.93 -0.38 0.88 16 33 H 0.09 1.13 7.11 -51.93 -0.37 0.76 16 34 H 0.10 1.59 5.95 -51.93 -0.31 1.28 16 35 H 0.05 0.66 7.91 -51.93 -0.41 0.25 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 39 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.16 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -31.49 331.50 -7.61 -39.10 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.32 Total: 1.83 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -1.35 Total: -6.42 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.02 Total: -43.73 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.35 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.49 -7.61 -39.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531409429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.758 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds