Wall clock time and date at job start Mon Mar 30 2020 07:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47325 * 2 1 4 4 C 1.46493 * 120.00444 * 270.27624 * 3 2 1 5 5 C 1.50702 * 109.47427 * 269.72511 * 4 3 2 6 6 H 1.07999 * 119.99972 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99945 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99852 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00230 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47399 * 89.99911 * 9 7 5 11 11 H 1.48505 * 109.47222 * 210.00067 * 9 7 5 12 12 H 1.48500 * 109.47085 * 329.99867 * 9 7 5 13 13 C 1.34784 * 119.99635 * 90.00335 * 3 2 1 14 14 O 1.21283 * 119.99649 * 180.02562 * 13 3 2 15 15 C 1.50694 * 119.99988 * 0.02562 * 13 3 2 16 16 C 1.53001 * 109.47168 * 179.97438 * 15 13 3 17 17 H 1.09001 * 109.47216 * 54.99856 * 16 15 13 18 18 C 1.53001 * 109.47042 * 295.00098 * 16 15 13 19 19 N 1.46495 * 109.47320 * 174.99807 * 16 15 13 20 20 C 1.36345 * 125.63392 * 59.69856 * 19 16 15 21 21 C 1.34858 * 108.21931 * 179.83024 * 20 19 16 22 22 C 1.40892 * 107.41202 * 0.42129 * 21 20 19 23 23 C 1.34845 * 107.41997 * 359.73910 * 22 21 20 24 24 H 1.08998 * 109.46465 * 299.99693 * 1 2 3 25 25 H 1.08993 * 109.47021 * 59.99589 * 1 2 3 26 26 H 1.08996 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46903 * 240.00151 * 2 1 3 28 28 H 1.09004 * 109.47175 * 120.00822 * 2 1 3 29 29 H 1.09002 * 109.47192 * 29.72648 * 4 3 2 30 30 H 1.08996 * 109.47342 * 149.72358 * 4 3 2 31 31 H 0.97005 * 119.99840 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47224 * 299.99701 * 15 13 3 33 33 H 1.09002 * 109.47054 * 60.00213 * 15 13 3 34 34 H 1.08999 * 109.47109 * 299.99438 * 18 16 15 35 35 H 1.08995 * 109.47017 * 60.00139 * 18 16 15 36 36 H 1.09005 * 109.47003 * 179.97438 * 18 16 15 37 37 H 1.08001 * 125.89167 * 359.95635 * 20 19 16 38 38 H 1.07991 * 126.29475 * 180.15748 * 21 20 19 39 39 H 1.08010 * 126.28920 * 179.73419 * 22 21 20 40 40 H 1.08005 * 125.89260 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2568 2.0738 -1.2686 5 6 3.6801 1.8433 -1.7071 6 1 4.3408 1.2407 -1.1016 7 6 4.1384 2.4009 -2.8819 8 7 5.3803 2.1993 -3.2648 9 14 2.9954 3.4426 -3.9296 10 1 3.0939 4.8630 -3.5075 11 1 3.3855 3.3223 -5.3574 12 1 1.5980 2.9707 -3.7568 13 6 2.2431 2.0164 1.1673 14 8 2.6470 3.1600 1.1673 15 6 1.9925 1.3057 2.4723 16 6 2.3245 2.2428 3.6353 17 1 1.7589 3.1685 3.5289 18 6 3.8220 2.5563 3.6262 19 7 1.9687 1.5959 4.9006 20 6 2.4765 0.4171 5.3604 21 6 1.9116 0.1523 6.5560 22 6 1.0151 1.2014 6.8402 23 6 1.0707 2.0701 5.8104 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 1.5759 1.6876 -2.0271 30 1 2.0857 3.1422 -1.1370 31 1 5.7028 2.5919 -4.0911 32 1 0.9447 1.0113 2.5303 33 1 2.6231 0.4185 2.5298 34 1 4.3876 1.6307 3.7326 35 1 4.0866 3.0377 2.6848 36 1 4.0584 3.2243 4.4545 37 1 3.2070 -0.1976 4.8553 38 1 2.1069 -0.7080 7.1788 39 1 0.3969 1.2930 7.7212 40 1 0.5017 2.9838 5.7213 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531409430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:08 Heat of formation + Delta-G solvation = 12.337590 kcal Electronic energy + Delta-G solvation = -20261.579889 eV Core-core repulsion = 17270.441348 eV Total energy + Delta-G solvation = -2991.138541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.20303 -39.38539 -35.80244 -34.74061 -32.76716 -30.49363 -29.81786 -28.74250 -28.49116 -26.93433 -23.19519 -23.06292 -21.83360 -20.41530 -19.50182 -18.29413 -17.52967 -16.98369 -16.06682 -15.76816 -15.16283 -14.53598 -14.26716 -14.03929 -13.62974 -13.56414 -13.32304 -12.89333 -12.67110 -12.42752 -12.31099 -12.21796 -12.02878 -11.95279 -11.60229 -11.57772 -11.20131 -11.10088 -10.99620 -10.70364 -10.54495 -10.21202 -9.60809 -9.14132 -8.64184 -8.55159 -8.10126 -7.83070 -6.14000 -4.13258 2.35985 2.92802 3.10946 3.18322 3.24921 3.30878 3.32715 3.76986 4.34578 4.59432 4.81633 4.89549 5.10762 5.13468 5.19726 5.25710 5.30659 5.42044 5.50264 5.57128 5.61136 5.65742 5.71311 5.89189 5.94160 5.99684 6.07691 6.31791 6.33100 6.36793 6.44795 6.63258 6.86769 7.05805 7.24263 7.32923 7.46741 7.54789 8.12888 8.40318 8.80883 8.89727 9.45988 10.99270 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.030372 B = 0.004642 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.675074 B = 6029.852080 C = 6373.201538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.589 5.589 4 C 0.216 3.784 5 C -0.530 4.530 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.513 3.487 14 O -0.539 6.539 15 C -0.150 4.150 16 C 0.148 3.852 17 H 0.105 0.895 18 C -0.166 4.166 19 N -0.439 5.439 20 C -0.011 4.011 21 C -0.208 4.208 22 C -0.208 4.208 23 C -0.016 4.016 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.037 0.963 31 H 0.265 0.735 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.156 0.844 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.800 -4.550 13.956 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.320 5.320 4 C 0.096 3.904 5 C -0.568 4.568 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.299 3.701 14 O -0.417 6.417 15 C -0.191 4.191 16 C 0.046 3.954 17 H 0.123 0.877 18 C -0.223 4.223 19 N -0.114 5.114 20 C -0.142 4.142 21 C -0.233 4.233 22 C -0.233 4.233 23 C -0.146 4.146 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.174 0.826 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.353 -3.731 13.439 16.793 hybrid contribution -0.474 0.350 -0.659 0.884 sum -9.827 -3.380 12.781 16.473 Atomic orbital electron populations 1.22227 0.96660 1.01732 1.02198 1.21474 0.93481 0.83739 1.03229 1.47929 1.63701 1.13362 1.06992 1.19669 0.97442 0.93329 0.79995 1.21303 0.95215 1.33106 1.07196 0.90765 1.24852 0.95003 0.95780 0.97316 1.69896 1.15228 1.44861 1.23488 0.86856 0.81460 0.81576 0.79816 1.19893 1.21030 1.19109 1.19986 0.78356 0.86854 0.84855 1.90653 1.45874 1.18102 1.87104 1.22055 1.03999 0.99972 0.93066 1.21161 0.98637 0.95652 0.79934 0.87731 1.22289 0.92797 1.02346 1.04910 1.44474 1.32362 1.18228 1.16355 1.21757 1.04279 0.90436 0.97708 1.20839 1.03028 1.01584 0.97850 1.20832 1.04984 0.97243 1.00223 1.21840 0.98935 1.01842 0.91992 0.93036 0.92169 0.91853 0.89584 0.91355 0.95223 0.94548 0.92513 0.88811 0.88628 0.92451 0.87982 0.92323 0.82612 0.85149 0.85167 0.82563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.10 1.55 5.93 -4.04 -0.02 1.53 16 3 N -0.59 -11.43 2.46 -175.06 -0.43 -11.86 16 4 C 0.22 5.10 4.23 -5.20 -0.02 5.07 16 5 C -0.53 -14.81 9.94 -34.44 -0.34 -15.15 16 6 H 0.07 2.28 8.06 -52.49 -0.42 1.85 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 9 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 13 C 0.51 9.62 7.39 -10.98 -0.08 9.53 16 14 O -0.54 -12.04 13.55 5.56 0.08 -11.97 16 15 C -0.15 -2.06 3.71 -27.89 -0.10 -2.17 16 16 C 0.15 1.99 2.67 -67.93 -0.18 1.81 16 17 H 0.10 1.44 7.88 -51.93 -0.41 1.03 16 18 C -0.17 -2.36 8.98 37.16 0.33 -2.03 16 19 N -0.44 -5.55 2.62 -110.02 -0.29 -5.83 16 20 C -0.01 -0.14 10.45 -16.74 -0.18 -0.31 16 21 C -0.21 -2.49 10.86 -39.78 -0.43 -2.92 16 22 C -0.21 -2.46 10.86 -39.78 -0.43 -2.90 16 23 C -0.02 -0.19 11.39 -16.75 -0.19 -0.38 16 24 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 28 H 0.07 0.86 6.44 -51.93 -0.33 0.52 16 29 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 30 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.09 1.16 7.19 -51.93 -0.37 0.78 16 33 H 0.10 1.21 7.31 -51.93 -0.38 0.83 16 34 H 0.06 0.76 7.92 -51.93 -0.41 0.35 16 35 H 0.10 1.77 5.95 -51.93 -0.31 1.46 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 40 H 0.16 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -32.24 327.91 -7.25 -39.49 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.29 Total: 2.76 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -1.37 Total: -7.61 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.06 Total: -44.12 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.24 -7.25 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531409430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.827 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds