Wall clock time and date at job start Mon Mar 30 2020 07:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47325 * 2 1 4 4 C 1.46493 * 120.00444 * 270.27624 * 3 2 1 5 5 C 1.50702 * 109.47427 * 269.72511 * 4 3 2 6 6 H 1.07999 * 119.99972 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99945 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99852 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00230 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47399 * 89.99911 * 9 7 5 11 11 H 1.48505 * 109.47222 * 210.00067 * 9 7 5 12 12 H 1.48500 * 109.47085 * 329.99867 * 9 7 5 13 13 C 1.34784 * 119.99635 * 90.00335 * 3 2 1 14 14 O 1.21283 * 119.99649 * 180.02562 * 13 3 2 15 15 C 1.50694 * 119.99988 * 0.02562 * 13 3 2 16 16 C 1.53001 * 109.47168 * 179.97438 * 15 13 3 17 17 H 1.09001 * 109.47216 * 54.99856 * 16 15 13 18 18 C 1.53001 * 109.47042 * 295.00098 * 16 15 13 19 19 N 1.46495 * 109.47320 * 174.99807 * 16 15 13 20 20 C 1.36345 * 125.63392 * 59.69856 * 19 16 15 21 21 C 1.34858 * 108.21931 * 179.83024 * 20 19 16 22 22 C 1.40892 * 107.41202 * 0.42129 * 21 20 19 23 23 C 1.34845 * 107.41997 * 359.73910 * 22 21 20 24 24 H 1.08998 * 109.46465 * 299.99693 * 1 2 3 25 25 H 1.08993 * 109.47021 * 59.99589 * 1 2 3 26 26 H 1.08996 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46903 * 240.00151 * 2 1 3 28 28 H 1.09004 * 109.47175 * 120.00822 * 2 1 3 29 29 H 1.09002 * 109.47192 * 29.72648 * 4 3 2 30 30 H 1.08996 * 109.47342 * 149.72358 * 4 3 2 31 31 H 0.97005 * 119.99840 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47224 * 299.99701 * 15 13 3 33 33 H 1.09002 * 109.47054 * 60.00213 * 15 13 3 34 34 H 1.08999 * 109.47109 * 299.99438 * 18 16 15 35 35 H 1.08995 * 109.47017 * 60.00139 * 18 16 15 36 36 H 1.09005 * 109.47003 * 179.97438 * 18 16 15 37 37 H 1.08001 * 125.89167 * 359.95635 * 20 19 16 38 38 H 1.07991 * 126.29475 * 180.15748 * 21 20 19 39 39 H 1.08010 * 126.28920 * 179.73419 * 22 21 20 40 40 H 1.08005 * 125.89260 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2568 2.0738 -1.2686 5 6 3.6801 1.8433 -1.7071 6 1 4.3408 1.2407 -1.1016 7 6 4.1384 2.4009 -2.8819 8 7 5.3803 2.1993 -3.2648 9 14 2.9954 3.4426 -3.9296 10 1 3.0939 4.8630 -3.5075 11 1 3.3855 3.3223 -5.3574 12 1 1.5980 2.9707 -3.7568 13 6 2.2431 2.0164 1.1673 14 8 2.6470 3.1600 1.1673 15 6 1.9925 1.3057 2.4723 16 6 2.3245 2.2428 3.6353 17 1 1.7589 3.1685 3.5289 18 6 3.8220 2.5563 3.6262 19 7 1.9687 1.5959 4.9006 20 6 2.4765 0.4171 5.3604 21 6 1.9116 0.1523 6.5560 22 6 1.0151 1.2014 6.8402 23 6 1.0707 2.0701 5.8104 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 1.5759 1.6876 -2.0271 30 1 2.0857 3.1422 -1.1370 31 1 5.7028 2.5919 -4.0911 32 1 0.9447 1.0113 2.5303 33 1 2.6231 0.4185 2.5298 34 1 4.3876 1.6307 3.7326 35 1 4.0866 3.0377 2.6848 36 1 4.0584 3.2243 4.4545 37 1 3.2070 -0.1976 4.8553 38 1 2.1069 -0.7080 7.1788 39 1 0.3969 1.2930 7.7212 40 1 0.5017 2.9838 5.7213 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531409430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:07 Heat of formation + Delta-G solvation = -6.336394 kcal Electronic energy + Delta-G solvation = -20262.389654 eV Core-core repulsion = 17270.441348 eV Total energy + Delta-G solvation = -2991.948306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.16169 -40.82100 -37.24259 -35.94330 -34.83951 -31.99585 -30.90394 -29.94479 -29.54046 -28.46815 -24.77338 -24.28313 -23.21435 -21.33320 -20.50659 -19.68039 -19.11599 -18.64281 -17.31726 -17.27603 -16.63360 -16.01905 -15.49505 -15.45289 -14.77202 -14.72590 -14.52482 -14.40186 -14.06177 -13.72633 -13.64243 -13.45253 -13.21829 -13.09296 -12.89566 -12.78287 -12.56573 -12.51472 -12.26072 -12.18422 -12.03456 -11.82711 -11.74907 -10.83878 -10.68245 -9.48890 -9.44408 -8.99787 -8.34718 -6.39635 1.32090 1.35597 1.43480 1.44242 1.70707 1.88882 2.22534 2.29883 2.42032 2.99924 3.48416 3.62345 3.78130 4.04269 4.15704 4.21651 4.36088 4.44635 4.45126 4.48044 4.60715 4.68687 4.74132 4.79226 4.83991 4.91445 4.94537 4.97275 4.99431 5.20638 5.35892 5.45669 5.46693 5.50528 5.62565 6.17933 6.22346 6.42730 6.53794 6.61753 6.66206 7.20206 7.36701 8.82090 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.030372 B = 0.004642 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.675074 B = 6029.852080 C = 6373.201538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 N -0.598 5.598 4 C 0.226 3.774 5 C -0.534 4.534 6 H 0.030 0.970 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.276 1.276 11 H -0.276 1.276 12 H -0.239 1.239 13 C 0.505 3.495 14 O -0.583 6.583 15 C -0.133 4.133 16 C 0.157 3.843 17 H 0.099 0.901 18 C -0.161 4.161 19 N -0.443 5.443 20 C -0.024 4.024 21 C -0.217 4.217 22 C -0.216 4.216 23 C -0.028 4.028 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.020 0.980 31 H 0.268 0.732 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.170 0.830 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.224 -5.397 14.913 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.329 5.329 4 C 0.103 3.897 5 C -0.573 4.573 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.768 3.232 10 H -0.202 1.202 11 H -0.202 1.202 12 H -0.162 1.162 13 C 0.294 3.706 14 O -0.464 6.464 15 C -0.173 4.173 16 C 0.054 3.946 17 H 0.118 0.882 18 C -0.218 4.218 19 N -0.119 5.119 20 C -0.153 4.153 21 C -0.241 4.241 22 C -0.241 4.241 23 C -0.157 4.157 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.187 0.813 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.810 -4.628 14.429 19.211 hybrid contribution 0.361 0.553 -0.850 1.076 sum -11.449 -4.075 13.578 18.223 Atomic orbital electron populations 1.22153 0.94061 1.03627 1.02037 1.21776 0.95543 0.81197 1.03970 1.48034 1.63919 1.15062 1.05851 1.19298 0.94810 0.93063 0.82502 1.21550 0.96968 1.32098 1.06683 0.95157 1.25821 0.96670 0.97182 0.98921 1.70049 1.17519 1.46544 1.24401 0.85748 0.80483 0.79091 0.77830 1.20150 1.20161 1.16202 1.20832 0.77080 0.86546 0.86156 1.90635 1.47613 1.20278 1.87880 1.21955 1.05735 0.99696 0.89927 1.20930 0.97685 0.95528 0.80468 0.88245 1.22174 0.93927 1.02524 1.03193 1.44393 1.32902 1.18524 1.16031 1.22089 1.04680 0.90442 0.98112 1.21151 1.02856 1.02141 0.97981 1.21147 1.05101 0.97108 1.00717 1.22235 0.98975 1.02602 0.91904 0.92160 0.93365 0.88882 0.90878 0.88705 0.93552 0.96179 0.92304 0.86390 0.87042 0.91678 0.91438 0.91689 0.81310 0.83659 0.83573 0.80969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.24 71.98 0.74 -2.66 16 2 C 0.10 2.70 5.93 86.38 0.51 3.21 16 3 N -0.60 -22.87 2.46 -826.17 -2.03 -24.90 16 4 C 0.23 10.64 4.23 85.64 0.36 11.00 16 5 C -0.53 -30.76 9.94 25.60 0.25 -30.50 16 6 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 7 C 0.01 0.71 5.47 84.65 0.46 1.17 16 8 N -0.94 -59.12 13.96 21.45 0.30 -58.82 16 9 Si 0.95 43.80 27.47 68.60 1.88 45.69 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 13 C 0.51 18.76 7.39 87.65 0.65 19.41 16 14 O -0.58 -26.66 13.55 -3.04 -0.04 -26.70 16 15 C -0.13 -3.39 3.71 29.85 0.11 -3.28 16 16 C 0.16 4.00 2.67 44.99 0.12 4.12 16 17 H 0.10 2.66 7.88 -2.39 -0.02 2.64 16 18 C -0.16 -4.55 8.98 71.98 0.65 -3.91 16 19 N -0.44 -10.21 2.62 -502.00 -1.31 -11.53 16 20 C -0.02 -0.51 10.45 83.21 0.87 0.36 16 21 C -0.22 -4.62 10.86 22.14 0.24 -4.38 16 22 C -0.22 -4.57 10.86 22.14 0.24 -4.33 16 23 C -0.03 -0.60 11.39 83.21 0.95 0.35 16 24 H 0.06 1.18 7.22 -2.39 -0.02 1.16 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 28 H 0.09 2.10 6.44 -2.38 -0.02 2.09 16 29 H 0.05 2.03 7.13 -2.39 -0.02 2.01 16 30 H 0.02 1.02 6.85 -2.39 -0.02 1.00 16 31 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 32 H 0.12 2.49 7.19 -2.39 -0.02 2.47 16 33 H 0.11 2.53 7.31 -2.39 -0.02 2.51 16 34 H 0.06 1.69 7.92 -2.39 -0.02 1.67 16 35 H 0.07 2.43 5.95 -2.39 -0.01 2.41 16 36 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 38 H 0.15 2.56 8.06 -2.92 -0.02 2.53 16 39 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 40 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -72.39 327.91 5.90 -66.49 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.95 Total: 19.23 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 6.15 Total: -9.46 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -3.04 Total: -95.25 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.04 Total: -26.70 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.69 kcal Total: -72.39 5.90 -66.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531409430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.157 kcal (2) G-P(sol) polarization free energy of solvation -72.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds