Wall clock time and date at job start Mon Mar 30 2020 07:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.50702 * 109.47427 * 269.72511 * 3 2 1 5 5 C 1.34850 * 125.88861 * 94.99702 * 4 3 2 6 6 C 1.40889 * 107.41623 * 180.02562 * 5 4 3 7 7 C 1.34848 * 107.41819 * 0.02562 * 6 5 4 8 8 N 1.36338 * 125.89119 * 274.68981 * 4 3 2 9 9 H 0.96997 * 125.63622 * 359.97438 * 8 4 3 10 10 C 1.34784 * 119.99635 * 179.72711 * 2 1 3 11 11 O 1.21283 * 119.99649 * 180.02562 * 10 2 1 12 12 C 1.50694 * 119.99988 * 0.02562 * 10 2 1 13 13 C 1.53001 * 109.47168 * 179.97438 * 12 10 2 14 14 C 1.53000 * 109.47355 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.46986 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46614 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00477 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99722 * 180.02562 * 16 15 14 19 19 N 1.31522 * 120.00282 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00039 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46889 * 90.00221 * 20 18 16 22 22 H 1.48501 * 109.46989 * 209.99665 * 20 18 16 23 23 H 1.48494 * 109.47191 * 330.00272 * 20 18 16 24 24 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 25 25 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 26 26 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 27 27 H 1.09002 * 109.47192 * 29.72648 * 3 2 1 28 28 H 1.08996 * 109.47342 * 149.72358 * 3 2 1 29 29 H 1.07999 * 126.29504 * 0.02664 * 5 4 3 30 30 H 1.07998 * 126.29066 * 179.97438 * 6 5 4 31 31 H 1.08001 * 125.89373 * 180.02562 * 7 6 5 32 32 H 1.08998 * 109.47224 * 299.99701 * 12 10 2 33 33 H 1.09002 * 109.47054 * 60.00213 * 12 10 2 34 34 H 1.09000 * 109.47339 * 299.99895 * 13 12 10 35 35 H 1.09002 * 109.46926 * 60.00175 * 13 12 10 36 36 H 1.09000 * 109.46966 * 300.00313 * 14 13 12 37 37 H 1.09002 * 109.46807 * 60.00291 * 14 13 12 38 38 H 1.08998 * 109.47018 * 300.00053 * 15 14 13 39 39 H 1.09002 * 109.47113 * 60.00475 * 15 14 13 40 40 H 0.96990 * 120.00017 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4546 1.7003 -1.4208 5 6 1.6918 2.5487 -2.1396 6 6 2.2863 2.6769 -3.4104 7 6 3.3895 1.9015 -3.4201 8 7 3.5019 1.3050 -2.1992 9 1 4.2083 0.6972 -1.9300 10 6 2.1388 -1.1673 0.0056 11 8 3.3516 -1.1673 0.0060 12 6 1.3852 -2.4723 0.0112 13 6 2.3794 -3.6353 0.0162 14 6 1.6143 -4.9603 0.0226 15 6 2.6086 -6.1232 0.0282 16 6 1.8549 -7.4282 0.0339 17 1 0.7750 -7.4282 0.0330 18 6 2.5443 -8.6223 0.0401 19 7 3.8595 -8.6224 0.0406 20 14 1.6102 -10.2400 0.0478 21 1 1.3633 -10.6756 -1.3503 22 1 2.4125 -11.2714 0.7532 23 1 0.3124 -10.0589 0.7463 24 1 -0.3634 0.0049 1.0276 25 1 -0.3633 0.8875 -0.5181 26 1 -0.3634 -0.8924 -0.5096 27 1 1.6064 2.0295 0.5096 28 1 3.1477 1.1395 0.5181 29 1 0.7907 3.0398 -1.8030 30 1 1.9245 3.2839 -4.2271 31 1 4.0701 1.7789 -4.2496 32 1 0.7583 -2.5260 0.9012 33 1 0.7589 -2.5340 -0.8788 34 1 3.0061 -3.5815 -0.8740 35 1 3.0060 -3.5737 0.9060 36 1 0.9880 -5.0138 0.9130 37 1 0.9874 -5.0220 -0.8670 38 1 3.2353 -6.0697 -0.8620 39 1 3.2352 -6.0612 0.9180 40 1 4.3444 -9.4624 0.0446 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588160405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:40 Heat of formation + Delta-G solvation = -12.793119 kcal Electronic energy + Delta-G solvation = -19239.901084 eV Core-core repulsion = 16247.672793 eV Total energy + Delta-G solvation = -2992.228290 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.28046 -39.73669 -35.81068 -34.90978 -32.68243 -31.04084 -30.98421 -29.43111 -27.13189 -26.24988 -24.72247 -22.19486 -20.67312 -20.37568 -20.01345 -19.17724 -17.78752 -16.86259 -16.30347 -16.12093 -15.72418 -14.56432 -14.44551 -14.08587 -13.91220 -13.56047 -13.35387 -13.14022 -12.89640 -12.69662 -12.50621 -12.36309 -12.15552 -11.80337 -11.64123 -11.52744 -10.98521 -10.54373 -10.50609 -10.40817 -9.87225 -9.61770 -9.23648 -8.99366 -8.97762 -8.93069 -8.30809 -8.21629 -5.95620 -3.98164 2.00052 2.63713 2.76570 3.16807 3.27115 3.33757 3.39761 3.43033 4.47705 4.53485 4.74313 4.91775 4.99634 5.09181 5.18745 5.28152 5.30876 5.34833 5.39664 5.43707 5.48766 5.58757 5.84871 6.07733 6.12632 6.13080 6.24078 6.32327 6.53920 6.83044 6.84621 6.99421 7.01221 7.18234 7.25370 7.48410 7.73609 7.89451 8.05650 8.14789 8.47607 9.09568 9.65539 11.15753 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.034754 B = 0.003029 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.480716 B = 9240.788499 C = 9528.809782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.619 5.619 3 C 0.180 3.820 4 C -0.001 4.001 5 C -0.190 4.190 6 C -0.207 4.207 7 C -0.011 4.011 8 N -0.544 5.544 9 H 0.418 0.582 10 C 0.515 3.485 11 O -0.540 6.540 12 C -0.137 4.137 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.162 0.838 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.301 23.892 -2.485 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.354 5.354 3 C 0.057 3.943 4 C -0.116 4.116 5 C -0.216 4.216 6 C -0.231 4.231 7 C -0.143 4.143 8 N -0.139 5.139 9 H 0.256 0.744 10 C 0.305 3.695 11 O -0.417 6.417 12 C -0.177 4.177 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.179 0.821 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.389 23.660 -2.411 24.386 hybrid contribution -0.251 -1.135 -0.076 1.165 sum -5.639 22.525 -2.487 23.353 Atomic orbital electron populations 1.21820 0.79117 1.03651 1.01886 1.48059 1.07231 1.05526 1.74553 1.19801 0.98514 0.85588 0.90373 1.20726 0.92245 1.03092 0.95532 1.20672 1.01792 1.04129 0.94968 1.20868 0.98267 1.05432 0.98576 1.21898 1.02062 1.01238 0.89118 1.42108 1.22422 1.37775 1.11562 0.74428 1.21169 0.88227 0.85565 0.74578 1.90653 1.14251 1.87438 1.49339 1.21825 1.00104 0.91924 1.03839 1.21456 0.97019 0.92792 1.02803 1.21649 0.99078 0.93979 1.00067 1.19092 0.94048 0.91287 0.97260 1.21285 0.92994 0.91201 1.50372 0.92743 1.25045 0.94844 0.99242 0.95452 1.69975 1.06060 1.26509 1.50974 0.86608 0.79832 0.83578 0.78053 1.20704 1.21245 1.19902 0.92369 0.90935 0.90594 0.88370 0.89315 0.85003 0.84905 0.82071 0.89079 0.89181 0.91992 0.91829 0.93445 0.93514 0.96664 0.96601 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 10.24 59.84 0.61 1.19 16 2 N -0.62 -6.57 2.86 -182.96 -0.52 -7.09 16 3 C 0.18 1.75 5.94 -5.20 -0.03 1.72 16 4 C 0.00 -0.01 6.75 -81.79 -0.55 -0.57 16 5 C -0.19 -1.95 10.76 -39.78 -0.43 -2.38 16 6 C -0.21 -2.12 10.86 -39.78 -0.43 -2.55 16 7 C -0.01 -0.11 11.94 -16.75 -0.20 -0.31 16 8 N -0.54 -6.03 6.07 -9.12 -0.06 -6.09 16 9 H 0.42 4.59 8.96 -40.82 -0.37 4.23 16 10 C 0.51 7.20 7.67 -10.98 -0.08 7.12 16 11 O -0.54 -9.31 15.56 5.56 0.09 -9.23 16 12 C -0.14 -1.86 4.25 -27.89 -0.12 -1.98 16 13 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 14 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 20 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 26 H 0.08 0.54 6.44 -51.93 -0.33 0.21 16 27 H 0.10 0.68 8.07 -51.93 -0.42 0.26 16 28 H 0.09 0.96 7.42 -51.93 -0.39 0.57 16 29 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 33 H 0.09 1.10 7.40 -51.93 -0.38 0.71 16 34 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.01 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 337.87 15.07 5.09 5.09 Total: -1.00 -34.16 337.87 -8.22 -42.38 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.49 Total: 0.51 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -2.04 Total: -15.62 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.16 Total: -40.08 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.16 -8.22 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.588 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds