Wall clock time and date at job start Mon Mar 30 2020 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00098 * 2 1 4 4 H 1.48502 * 109.47214 * 270.00416 * 3 2 1 5 5 H 1.48498 * 109.47151 * 30.00324 * 3 2 1 6 6 H 1.48500 * 109.47172 * 150.00368 * 3 2 1 7 7 C 1.37873 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00194 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99970 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47000 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47070 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47293 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47201 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00184 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99772 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99705 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46911 * 179.97438 * 16 15 13 18 18 C 1.50704 * 109.47000 * 179.97438 * 17 16 15 19 19 C 1.34845 * 125.88833 * 84.99859 * 18 17 16 20 20 C 1.40883 * 107.41891 * 180.02562 * 19 18 17 21 21 C 1.34854 * 107.41814 * 0.02562 * 20 19 18 22 22 N 1.36343 * 108.21624 * 0.26031 * 21 20 19 23 23 H 0.96994 * 125.63652 * 179.73195 * 22 21 20 24 24 H 0.97002 * 119.99824 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46960 * 60.00150 * 9 7 2 26 26 H 1.08998 * 109.47523 * 300.00168 * 9 7 2 27 27 H 1.08998 * 109.47090 * 60.00293 * 10 9 7 28 28 H 1.09002 * 109.47177 * 299.99939 * 10 9 7 29 29 H 1.09007 * 109.47365 * 60.00222 * 11 10 9 30 30 H 1.08998 * 109.47226 * 300.00092 * 11 10 9 31 31 H 1.09007 * 109.46477 * 59.99992 * 12 11 10 32 32 H 1.08998 * 109.47315 * 300.00351 * 12 11 10 33 33 H 0.96991 * 120.00095 * 359.97438 * 15 13 12 34 34 H 1.08998 * 109.47421 * 59.99731 * 16 15 13 35 35 H 1.09002 * 109.46734 * 299.99445 * 16 15 13 36 36 H 1.09007 * 109.46845 * 59.99715 * 17 16 15 37 37 H 1.08998 * 109.47171 * 299.99937 * 17 16 15 38 38 H 1.08010 * 126.29149 * 0.02562 * 19 18 17 39 39 H 1.08008 * 126.29481 * 179.97438 * 20 19 18 40 40 H 1.08002 * 125.89007 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0009 12 6 6.0615 -4.0791 -0.0002 13 6 7.5685 -4.0790 -0.0008 14 8 8.1749 -3.0288 -0.0012 15 7 8.2423 -5.2463 -0.0008 16 6 9.7074 -5.2463 -0.0008 17 6 10.2173 -6.6888 -0.0001 18 6 11.7244 -6.6888 -0.0007 19 6 12.5153 -6.5929 1.0872 20 6 13.8514 -6.6315 0.6420 21 6 13.8261 -6.7489 -0.7012 22 7 12.5232 -6.7784 -1.1020 23 1 12.2155 -6.8536 -2.0188 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8746 -0.6800 -0.8911 27 1 3.6578 -3.1505 -0.8907 28 1 3.6585 -3.1502 0.8893 29 1 5.9148 -2.1227 0.8891 30 1 5.9148 -2.1228 -0.8909 31 1 5.6981 -4.5933 -0.8900 32 1 5.6981 -4.5925 0.8900 33 1 7.7574 -6.0863 0.0000 34 1 10.0707 -4.7324 0.8892 35 1 10.0706 -4.7325 -0.8908 36 1 9.8539 -7.2030 -0.8899 37 1 9.8540 -7.2022 0.8901 38 1 12.1852 -6.5030 2.1117 39 1 14.7338 -6.5762 1.2623 40 1 14.6890 -6.8049 -1.3483 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588663442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:05 Heat of formation + Delta-G solvation = -22.932712 kcal Electronic energy + Delta-G solvation = -18375.662057 eV Core-core repulsion = 15382.994081 eV Total energy + Delta-G solvation = -2992.667976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.44910 -39.69763 -35.82048 -34.92002 -32.65360 -32.17041 -31.25989 -30.12671 -27.74978 -25.81745 -23.48739 -21.89680 -20.97353 -20.57504 -20.19798 -20.00712 -17.83063 -16.78707 -16.57908 -16.05819 -16.01382 -15.08593 -14.49793 -14.18051 -14.09753 -13.84059 -13.71502 -13.49281 -12.67850 -12.63475 -12.55435 -12.34936 -12.24562 -12.01299 -11.73505 -11.62361 -11.09478 -10.72234 -10.52232 -9.97721 -9.80640 -9.63256 -9.41342 -9.25047 -9.18041 -9.10480 -8.48162 -8.39013 -5.99374 -3.96747 1.86567 2.66814 2.68028 2.89446 3.16527 3.36450 3.43434 3.49795 4.49606 4.51323 4.54930 4.60412 4.85829 4.89962 5.07959 5.18880 5.24873 5.29185 5.33711 5.35957 5.52131 5.64495 5.81182 5.89979 6.00650 6.04752 6.16918 6.24434 6.43348 6.64474 6.70056 6.78124 6.84200 7.00804 7.21642 7.37353 7.39930 7.52631 7.86133 8.21320 8.59568 9.05572 9.64082 11.14080 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.057217 B = 0.002329 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.246686 B =12017.386694 C =12285.924784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.107 4.107 12 C -0.139 4.139 13 C 0.511 3.489 14 O -0.536 6.536 15 N -0.740 5.740 16 C 0.124 3.876 17 C -0.060 4.060 18 C 0.016 3.984 19 C -0.190 4.190 20 C -0.201 4.201 21 C -0.014 4.014 22 N -0.557 5.557 23 H 0.413 0.587 24 H 0.262 0.738 25 H 0.016 0.984 26 H 0.011 0.989 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.400 0.600 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.789 -18.177 -1.392 31.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.179 4.179 13 C 0.299 3.701 14 O -0.412 6.412 15 N -0.394 5.394 16 C 0.000 4.000 17 C -0.099 4.099 18 C -0.097 4.097 19 C -0.215 4.215 20 C -0.226 4.226 21 C -0.146 4.146 22 N -0.152 5.152 23 H 0.249 0.751 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.234 0.766 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 26.037 -17.285 -1.532 31.290 hybrid contribution 0.122 0.408 -0.454 0.622 sum 26.159 -16.877 -1.986 31.194 Atomic orbital electron populations 1.69922 1.06294 1.26803 1.51515 1.25048 0.94749 0.99241 0.94640 0.86769 0.80443 0.83535 0.78525 1.20338 1.21462 1.18887 1.21186 0.89674 0.94370 1.50459 0.91113 1.19582 0.96897 0.92532 0.96327 1.21477 0.91711 0.99905 1.00921 1.21486 0.97188 0.92887 1.02902 1.21776 0.90131 1.01741 1.04207 1.21097 0.90910 0.83114 0.74983 1.90710 1.70658 1.31358 1.48466 1.46096 1.06842 1.09138 1.77325 1.21283 0.80073 0.95818 1.02852 1.20268 0.88800 0.96840 1.03966 1.20024 0.92291 1.10628 0.86794 1.20757 0.92858 1.09989 0.97876 1.20938 0.97382 1.10230 0.94038 1.21850 0.86098 1.10240 0.96365 1.41993 1.06251 1.58390 1.08539 0.75100 0.92837 0.96601 0.97063 0.92883 0.92821 0.91779 0.91843 0.89014 0.88918 0.76595 0.91002 0.91832 0.90681 0.88932 0.84677 0.84717 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.49 13.96 55.43 0.77 -27.72 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.50 27.47 -169.99 -4.67 17.83 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 9 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 10 C -0.10 -2.02 5.15 -26.73 -0.14 -2.16 16 11 C -0.11 -1.80 4.50 -26.73 -0.12 -1.92 16 12 C -0.14 -1.72 5.70 -27.88 -0.16 -1.88 16 13 C 0.51 6.78 7.83 -10.98 -0.09 6.69 16 14 O -0.54 -9.57 15.98 5.56 0.09 -9.48 16 15 N -0.74 -6.72 5.56 -60.29 -0.33 -7.05 16 16 C 0.12 1.09 5.66 -4.04 -0.02 1.07 16 17 C -0.06 -0.36 5.87 -27.88 -0.16 -0.52 16 18 C 0.02 0.12 6.42 -81.79 -0.52 -0.41 16 19 C -0.19 -1.66 10.76 -39.79 -0.43 -2.09 16 20 C -0.20 -1.66 10.86 -39.78 -0.43 -2.09 16 21 C -0.01 -0.10 11.94 -16.75 -0.20 -0.30 16 22 N -0.56 -3.62 6.08 -9.12 -0.06 -3.67 16 23 H 0.41 1.63 8.96 -40.82 -0.37 1.26 16 24 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 25 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 26 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 30 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.40 2.32 8.47 -40.82 -0.35 1.98 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 40 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -36.05 337.67 -8.48 -44.53 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -6.56 Total: -1.73 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.82 Total: -17.81 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.38 Total: -38.44 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.67 Total: 17.83 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.05 -8.48 -44.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588663442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.601 kcal (2) G-P(sol) polarization free energy of solvation -36.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds