Wall clock time and date at job start Mon Mar 30 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36768 * 125.80411 * 2 1 4 4 C 1.47263 * 126.93911 * 359.97436 * 3 2 1 5 5 O 1.21623 * 120.00126 * 359.71320 * 4 3 2 6 6 N 1.34777 * 119.99630 * 179.71006 * 4 3 2 7 7 C 1.46499 * 119.99665 * 179.72408 * 6 4 3 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 C 1.52998 * 109.46876 * 299.99984 * 8 7 6 10 10 C 1.53005 * 109.46795 * 60.00011 * 8 7 6 11 11 C 1.50700 * 109.47208 * 180.02562 * 8 7 6 12 12 H 1.08002 * 119.99770 * 359.97438 * 11 8 7 13 13 C 1.37876 * 119.99720 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00513 * 0.02562 * 13 11 8 15 15 Si 1.86809 * 119.99651 * 179.97438 * 13 11 8 16 16 H 1.48493 * 109.47037 * 59.99882 * 15 13 11 17 17 H 1.48501 * 109.46667 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47133 * 299.99829 * 15 13 11 19 19 C 1.46690 * 106.11787 * 179.71569 * 3 2 1 20 20 C 1.34493 * 106.32943 * 0.25821 * 19 3 2 21 21 N 1.34664 * 125.79869 * 180.16205 * 2 1 3 22 22 C 1.46499 * 124.85268 * 0.02562 * 21 2 1 23 23 H 1.09002 * 109.47222 * 90.00112 * 1 2 3 24 24 H 1.09006 * 109.47580 * 210.00227 * 1 2 3 25 25 H 1.09000 * 109.47476 * 330.00106 * 1 2 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 27 27 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 28 28 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 29 29 H 1.08996 * 109.47009 * 60.00253 * 9 8 7 30 30 H 1.09004 * 109.46783 * 179.97438 * 9 8 7 31 31 H 1.08998 * 109.47156 * 300.00070 * 9 8 7 32 32 H 1.09000 * 109.47011 * 60.00556 * 10 8 7 33 33 H 1.09004 * 109.46658 * 180.02562 * 10 8 7 34 34 H 1.08996 * 109.47069 * 299.99740 * 10 8 7 35 35 H 0.96999 * 120.00239 * 180.02562 * 14 13 11 36 36 H 1.07994 * 126.83697 * 180.29986 * 19 3 2 37 37 H 1.08002 * 125.56840 * 180.02562 * 20 19 3 38 38 H 1.09003 * 109.47017 * 270.30988 * 22 21 2 39 39 H 1.08993 * 109.47396 * 30.31257 * 22 21 2 40 40 H 1.09001 * 109.47185 * 150.31452 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6840 2.7839 -0.0063 6 7 2.7850 3.5053 0.0055 7 6 2.3505 4.9043 -0.0012 8 6 3.5768 5.8193 0.0007 9 6 4.4117 5.5505 1.2543 10 6 4.4219 5.5418 -1.2443 11 6 3.1298 7.2585 -0.0055 12 1 2.0764 7.4967 -0.0107 13 6 4.0656 8.2710 -0.0046 14 7 5.3484 7.9809 0.0012 15 14 3.5115 10.0550 -0.0130 16 1 2.6906 10.3240 1.1948 17 1 4.7018 10.9429 -0.0111 18 1 2.7017 10.3161 -1.2301 19 6 3.6882 0.6151 0.0070 20 6 3.6095 -0.7275 0.0048 21 7 2.2947 -1.0922 -0.0031 22 6 1.8093 -2.4745 -0.0075 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 3.7311 3.2914 0.0097 27 1 1.7556 5.0959 -0.8943 28 1 1.7484 5.1021 0.8856 29 1 4.7350 4.5096 1.2591 30 1 5.2856 6.2021 1.2553 31 1 3.8096 5.7482 2.1411 32 1 3.8271 5.7334 -2.1373 33 1 5.2958 6.1934 -1.2427 34 1 4.7452 4.5009 -1.2393 35 1 6.0067 8.6933 0.0023 36 1 4.5890 1.2108 0.0134 37 1 4.4497 -1.4061 0.0089 38 1 1.6833 -2.8186 1.0190 39 1 0.8521 -2.5218 -0.5267 40 1 2.5315 -3.1115 -0.5182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590916559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:14 Heat of formation + Delta-G solvation = -0.299151 kcal Electronic energy + Delta-G solvation = -20076.143858 eV Core-core repulsion = 17084.457346 eV Total energy + Delta-G solvation = -2991.686511 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.26345 -38.62436 -36.16086 -33.24890 -32.68317 -31.50454 -30.69020 -27.07786 -26.29343 -25.62407 -25.37388 -24.51947 -21.87558 -19.90283 -18.99633 -18.44490 -17.31880 -15.90051 -15.68018 -15.40132 -14.89766 -14.51993 -14.33044 -13.96009 -13.20791 -13.09272 -12.99181 -12.71778 -12.65339 -12.55383 -12.47611 -12.05864 -12.03131 -11.45250 -11.27181 -11.09360 -10.76956 -10.66713 -10.28361 -10.13017 -9.52753 -9.38127 -9.10456 -8.70017 -8.58008 -8.34324 -8.21874 -7.93847 -5.94643 -4.04425 1.97018 2.52069 2.78245 3.35092 3.38923 3.42785 4.05789 4.13906 4.47132 4.54746 4.77780 4.86614 4.94497 5.09811 5.24720 5.31748 5.52490 5.62468 5.70029 5.99480 6.04033 6.27984 6.41379 6.46326 6.62674 6.86531 6.92007 6.94200 7.04192 7.13089 7.13921 7.23197 7.26955 7.47885 7.65452 7.76924 8.10251 8.20683 8.38670 8.48101 8.94140 9.02401 9.60815 11.06672 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.043238 B = 0.004056 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.423550 B = 6901.644717 C = 7347.383900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.095 3.905 3 C -0.226 4.226 4 C 0.580 3.420 5 O -0.565 6.565 6 N -0.712 5.712 7 C 0.134 3.866 8 C 0.056 3.944 9 C -0.130 4.130 10 C -0.130 4.130 11 C -0.505 4.505 12 H 0.057 0.943 13 C 0.066 3.934 14 N -0.887 5.887 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.165 4.165 20 C -0.024 4.024 21 N -0.450 5.450 22 C 0.070 3.930 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.397 0.603 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.007 0.993 30 H 0.084 0.916 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.084 0.916 34 H 0.007 0.993 35 H 0.259 0.741 36 H 0.146 0.854 37 H 0.165 0.835 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 -19.655 -0.001 19.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 C -0.236 4.236 4 C 0.368 3.632 5 O -0.447 6.447 6 N -0.361 5.361 7 C 0.011 3.989 8 C 0.055 3.945 9 C -0.188 4.188 10 C -0.188 4.188 11 C -0.543 4.543 12 H 0.075 0.925 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.189 4.189 20 C -0.150 4.150 21 N -0.127 5.127 22 C -0.072 4.072 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.121 0.879 26 H 0.232 0.768 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.103 0.897 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.163 0.837 37 H 0.182 0.818 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.446 -19.675 -0.007 19.974 hybrid contribution 0.401 0.767 -0.012 0.865 sum -3.045 -18.908 -0.019 19.152 Atomic orbital electron populations 1.20526 0.87271 1.03878 1.03133 1.20294 0.93677 0.85157 1.02983 1.20348 0.93061 0.92549 1.17664 1.17365 0.85596 0.84006 0.76233 1.90676 1.16818 1.84593 1.52576 1.46073 1.09491 1.07014 1.73559 1.21666 0.98853 0.78061 1.00308 1.18350 0.90069 0.93279 0.92815 1.21816 1.02238 0.97149 0.97560 1.21818 1.02234 0.97138 0.97577 1.20973 0.92943 0.89733 1.50691 0.92514 1.24877 0.94895 0.98849 0.94893 1.69801 0.99932 1.32088 1.50703 0.86645 0.77942 0.84675 0.78646 1.20312 1.21391 1.20318 1.22086 0.96097 0.93510 1.07202 1.21628 0.85275 0.96215 1.11867 1.43503 1.06035 1.05899 1.57285 1.22031 1.01550 0.80376 1.03231 0.90780 0.92364 0.87929 0.76768 0.92888 0.92879 0.97430 0.89697 0.95505 0.95508 0.89700 0.97426 0.93037 0.83673 0.81798 0.90950 0.89827 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 9.26 36.00 0.33 -0.77 16 2 C 0.09 1.33 6.89 -81.88 -0.56 0.76 16 3 C -0.23 -3.74 6.29 -103.35 -0.65 -4.39 16 4 C 0.58 11.47 7.81 -12.59 -0.10 11.38 16 5 O -0.57 -12.55 14.82 5.26 0.08 -12.47 16 6 N -0.71 -14.11 4.95 -61.43 -0.30 -14.41 16 7 C 0.13 3.02 4.50 -4.04 -0.02 3.01 16 8 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 9 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 10 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 11 C -0.50 -13.60 8.01 -34.44 -0.28 -13.88 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 14 N -0.89 -24.10 9.35 55.43 0.52 -23.58 16 15 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.16 -2.27 10.56 -37.49 -0.40 -2.66 16 20 C -0.02 -0.27 11.34 -16.82 -0.19 -0.46 16 21 N -0.45 -4.96 3.09 -119.88 -0.37 -5.33 16 22 C 0.07 0.44 10.60 59.85 0.63 1.07 16 23 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.52 7.59 -51.93 -0.39 0.13 16 25 H 0.10 1.50 6.47 -51.93 -0.34 1.17 16 26 H 0.40 7.26 5.29 -40.82 -0.22 7.05 16 27 H 0.05 1.25 8.14 -51.92 -0.42 0.83 16 28 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.01 0.14 6.86 -51.93 -0.36 -0.21 16 30 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 34 H 0.01 0.14 6.86 -51.93 -0.36 -0.21 16 35 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.15 1.81 7.69 -52.49 -0.40 1.41 16 37 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.44 7.51 -51.93 -0.39 0.05 16 40 H 0.08 0.36 8.13 -51.93 -0.42 -0.06 16 LS Contribution 321.65 15.07 4.85 4.85 Total: -1.00 -31.07 321.65 -7.05 -38.12 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.01 Total: 5.23 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -0.80 Total: -8.50 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -0.16 Total: -43.32 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.47 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.07 -7.05 -38.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.822 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds