Wall clock time and date at job start Mon Mar 30 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46880 * 299.18299 * 3 2 1 5 5 C 1.53002 * 109.46990 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47281 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47204 * 180.02562 * 6 5 4 8 8 O 1.21294 * 120.00111 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99992 * 180.02562 * 7 6 5 10 10 C 1.37092 * 119.99912 * 180.27456 * 9 7 6 11 11 H 1.08003 * 119.99727 * 222.78762 * 10 9 7 12 12 C 1.38953 * 120.00098 * 42.78926 * 10 9 7 13 13 N 1.31406 * 119.99855 * 19.09529 * 12 10 9 14 14 Si 1.86805 * 119.99804 * 199.09467 * 12 10 9 15 15 H 1.48498 * 109.47059 * 59.99796 * 14 12 10 16 16 H 1.48498 * 109.46747 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47164 * 299.99900 * 14 12 10 18 18 C 1.46497 * 120.00043 * 359.97438 * 9 7 6 19 19 C 1.54269 * 110.03443 * 239.87248 * 18 9 7 20 20 C 1.54959 * 104.16271 * 217.13320 * 19 18 9 21 21 C 1.54890 * 102.77553 * 37.88923 * 20 19 18 22 22 C 1.53874 * 110.03529 * 122.65169 * 18 9 7 23 23 H 1.08997 * 109.46709 * 179.18973 * 3 2 1 24 24 H 1.08994 * 109.47530 * 59.18662 * 3 2 1 25 25 H 1.09000 * 109.47248 * 60.00408 * 4 3 2 26 26 H 1.09007 * 109.47668 * 299.99986 * 4 3 2 27 27 H 1.09000 * 109.47011 * 59.99994 * 5 4 3 28 28 H 1.08994 * 109.47255 * 300.00263 * 5 4 3 29 29 H 1.09003 * 109.46670 * 59.99734 * 6 5 4 30 30 H 1.09000 * 109.46945 * 300.00017 * 6 5 4 31 31 H 0.97001 * 119.99613 * 174.74084 * 13 12 10 32 32 H 1.09006 * 110.01944 * 1.26139 * 18 9 7 33 33 H 1.08999 * 110.48342 * 335.78880 * 19 18 9 34 34 H 1.09006 * 110.48397 * 98.42653 * 19 18 9 35 35 H 1.08996 * 110.72047 * 279.57752 * 20 19 18 36 36 H 1.09002 * 110.92489 * 156.28921 * 20 19 18 37 37 H 1.09001 * 110.48895 * 203.40644 * 21 20 19 38 38 H 1.08999 * 110.60414 * 80.81750 * 21 20 19 39 39 H 1.08995 * 110.03602 * 238.57141 * 22 18 9 40 40 H 1.09003 * 110.03119 * 0.02562 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.7025 1.2594 5 6 4.6483 -0.7012 1.2597 6 6 5.1586 -1.4038 2.5195 7 6 6.6656 -1.4021 2.5201 8 8 7.2719 -0.8897 1.6030 9 7 7.3397 -1.9707 3.5393 10 6 8.7106 -1.9641 3.5426 11 1 9.2542 -2.8517 3.8310 12 6 9.4008 -0.8155 3.1750 13 7 8.7923 0.3491 3.1882 14 14 11.1936 -0.9270 2.6620 15 1 11.3151 -1.8135 1.4768 16 1 11.6956 0.4279 2.3197 17 1 11.9949 -1.4843 3.7812 18 6 6.6075 -2.5900 4.6467 19 6 6.9724 -1.8959 5.9753 20 6 7.0013 -3.0490 7.0100 21 6 7.6232 -4.2166 6.2044 22 6 7.0206 -4.0651 4.7923 23 1 2.9708 1.0284 -0.0145 24 1 2.9716 -0.5255 -0.8825 25 1 2.7554 -1.7302 1.2740 26 1 2.7547 -0.1762 2.1421 27 1 5.0108 0.3266 1.2453 28 1 5.0122 -1.2272 0.3772 29 1 4.7960 -2.4317 2.5343 30 1 4.7946 -0.8774 3.4018 31 1 9.2928 1.1598 3.0058 32 1 5.5341 -2.5185 4.4707 33 1 7.9522 -1.4240 5.9025 34 1 6.2130 -1.1611 6.2429 35 1 5.9921 -3.2995 7.3367 36 1 7.6291 -2.7910 7.8630 37 1 7.3386 -5.1746 6.6397 38 1 8.7085 -4.1225 6.1682 39 1 6.1477 -4.7094 4.6877 40 1 7.7662 -4.3201 4.0392 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593980202.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:37 Heat of formation + Delta-G solvation = -26.001729 kcal Electronic energy + Delta-G solvation = -20197.594298 eV Core-core repulsion = 17204.793240 eV Total energy + Delta-G solvation = -2992.801059 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.86882 -37.20087 -36.66084 -34.77877 -33.18290 -31.63662 -30.29099 -28.04113 -26.82069 -25.87534 -23.78757 -21.15107 -20.07544 -19.77318 -18.90681 -17.33870 -16.30559 -15.88539 -15.79204 -14.89462 -14.66059 -14.19964 -14.13677 -13.90506 -13.39158 -13.03978 -12.96045 -12.71771 -12.42384 -12.01623 -11.81850 -11.37795 -11.17630 -11.10849 -10.87691 -10.84489 -10.72182 -10.65358 -10.57639 -10.45224 -10.40000 -10.25562 -10.11864 -10.00880 -9.72279 -8.66361 -7.93365 -6.98763 -6.04494 -3.75867 2.70732 2.73846 3.33544 3.40413 3.44188 3.95098 4.26603 4.45711 4.87864 4.99907 5.09468 5.20272 5.26889 5.31170 5.41464 5.50907 5.64217 5.69615 5.80808 5.93203 6.03480 6.07401 6.11027 6.13730 6.16859 6.25016 6.27610 6.37625 6.46237 6.52559 6.63950 6.67304 6.80155 6.84238 6.99171 7.23892 7.50918 7.70742 8.36399 9.16468 9.27780 9.78271 10.41908 11.05105 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.016450 B = 0.005574 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.759317 B = 5022.522077 C = 6337.392907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.213 3.787 3 C -0.029 4.029 4 C -0.116 4.116 5 C -0.097 4.097 6 C -0.135 4.135 7 C 0.474 3.526 8 O -0.538 6.538 9 N -0.451 5.451 10 C -0.342 4.342 11 H 0.075 0.925 12 C 0.074 3.926 13 N -0.834 5.834 14 Si 0.907 3.093 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.280 1.280 18 C 0.130 3.870 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.131 4.131 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.262 0.738 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 -4.223 2.021 7.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.104 4.104 3 C -0.069 4.069 4 C -0.155 4.155 5 C -0.136 4.136 6 C -0.175 4.175 7 C 0.261 3.739 8 O -0.416 6.416 9 N -0.173 5.173 10 C -0.469 4.469 11 H 0.093 0.907 12 C -0.136 4.136 13 N -0.467 5.467 14 Si 0.735 3.265 15 H -0.201 1.201 16 H -0.214 1.214 17 H -0.206 1.206 18 C 0.025 3.975 19 C -0.164 4.164 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.169 4.169 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.762 -3.750 1.421 8.737 hybrid contribution 1.275 0.057 -0.031 1.276 sum -6.487 -3.693 1.391 7.593 Atomic orbital electron populations 1.81198 1.13302 1.09397 1.09157 1.29468 0.95536 0.92697 0.92746 1.19424 0.80828 1.04780 1.01892 1.21620 0.97424 1.00628 0.95789 1.21248 0.91514 1.02430 0.98361 1.21604 0.96593 1.00621 0.98724 1.19886 0.87627 0.83040 0.83310 1.90509 1.69588 1.45357 1.36127 1.43406 1.05271 1.52937 1.15682 1.18753 0.80116 0.97452 1.50625 0.90714 1.25163 0.98278 0.94671 0.95485 1.69815 1.36417 0.97506 1.43005 0.86367 0.83771 0.77186 0.79205 1.20119 1.21390 1.20593 1.21680 0.95095 0.91958 0.88799 1.22661 1.03393 0.96634 0.93672 1.22451 0.99574 0.96319 0.97745 1.22259 1.00518 0.97204 0.95523 1.22457 1.00235 0.96859 0.97393 0.87179 0.87244 0.91397 0.91317 0.90829 0.91194 0.91200 0.90993 0.92811 0.91491 0.89154 0.93088 0.92576 0.92421 0.92995 0.91641 0.93009 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.43 18.54 42.15 0.78 -5.65 16 2 C 0.21 2.39 15.43 -20.76 -0.32 2.07 16 3 C -0.03 -0.25 5.70 -29.52 -0.17 -0.42 16 4 C -0.12 -1.20 5.17 -26.73 -0.14 -1.34 16 5 C -0.10 -1.41 4.50 -26.73 -0.12 -1.53 16 6 C -0.13 -2.31 4.01 -27.88 -0.11 -2.42 16 7 C 0.47 11.22 6.96 -10.99 -0.08 11.14 16 8 O -0.54 -14.93 13.65 5.54 0.08 -14.85 16 9 N -0.45 -10.57 2.46 -106.54 -0.26 -10.83 16 10 C -0.34 -8.93 7.45 -14.93 -0.11 -9.04 16 11 H 0.08 1.91 7.08 -52.48 -0.37 1.54 16 12 C 0.07 2.02 4.35 -17.47 -0.08 1.94 16 13 N -0.83 -23.84 11.67 55.50 0.65 -23.19 16 14 Si 0.91 21.53 29.60 -169.99 -5.03 16.50 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 C 0.13 2.43 3.20 -66.81 -0.21 2.22 16 19 C -0.13 -2.27 6.42 -25.03 -0.16 -2.43 16 20 C -0.12 -1.80 6.91 -24.70 -0.17 -1.97 16 21 C -0.12 -1.75 6.83 -25.07 -0.17 -1.92 16 22 C -0.13 -2.17 6.20 -25.61 -0.16 -2.33 16 23 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 28 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 29 H 0.07 1.05 7.77 -51.93 -0.40 0.65 16 30 H 0.07 1.18 7.82 -51.93 -0.41 0.77 16 31 H 0.26 7.27 8.32 -40.82 -0.34 6.93 16 32 H 0.07 1.12 5.83 -51.93 -0.30 0.82 16 33 H 0.09 1.97 7.10 -51.93 -0.37 1.60 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.41 6.85 -51.93 -0.36 1.05 16 LS Contribution 328.77 15.07 4.95 4.95 Total: -1.00 -32.24 328.77 -7.24 -39.48 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.41 Total: -0.38 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.00 Total: -6.03 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 1.17 Total: -39.67 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.08 Total: -14.85 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.24 -7.24 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593980202.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.482 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds