Wall clock time and date at job start Mon Mar 30 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99430 * 2 1 4 4 H 1.48503 * 109.47527 * 269.99797 * 3 2 1 5 5 H 1.48497 * 109.47331 * 30.00164 * 3 2 1 6 6 H 1.48504 * 109.47008 * 150.00265 * 3 2 1 7 7 C 1.37868 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00330 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99683 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46803 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47079 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47227 * 179.97438 * 11 10 9 13 13 N 1.31135 * 126.55051 * 90.25213 * 12 11 10 14 14 C 1.34495 * 105.61364 * 180.12412 * 13 12 11 15 15 C 1.50706 * 126.28274 * 179.90504 * 14 13 12 16 16 C 1.53000 * 109.46735 * 239.70709 * 15 14 13 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 19 19 C 1.53005 * 109.47159 * 300.00546 * 18 17 16 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 18 17 21 21 N 1.29941 * 107.42534 * 359.63836 * 14 13 12 22 22 O 1.21304 * 110.25169 * 0.22865 * 21 14 13 23 23 H 0.97000 * 120.00718 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46845 * 60.00538 * 9 7 2 25 25 H 1.08995 * 109.47179 * 299.99984 * 9 7 2 26 26 H 1.08997 * 109.47814 * 60.00040 * 10 9 7 27 27 H 1.09007 * 109.47401 * 299.99831 * 10 9 7 28 28 H 1.08997 * 109.46825 * 60.00111 * 11 10 9 29 29 H 1.08995 * 109.46923 * 299.99727 * 11 10 9 30 30 H 1.08992 * 109.47518 * 359.71054 * 15 14 13 31 31 H 1.09002 * 109.47398 * 300.00410 * 16 15 14 32 32 H 1.09001 * 109.47194 * 60.00591 * 16 15 14 33 33 H 1.08996 * 109.47853 * 180.02562 * 17 16 15 34 34 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 35 35 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 36 36 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 37 37 H 1.09002 * 109.46935 * 299.99411 * 19 18 17 38 38 H 1.09001 * 109.46812 * 179.97438 * 19 18 17 39 39 H 1.08993 * 109.47194 * 179.97438 * 20 19 18 40 40 H 1.09002 * 109.46695 * 59.99734 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 6 1.4805 -4.9870 -0.0012 12 6 2.4598 -6.1324 -0.0018 13 7 2.9639 -6.7295 1.0513 14 6 3.7839 -7.6808 0.5702 15 6 4.6071 -8.6445 1.3856 16 6 6.0890 -8.4558 1.0551 17 6 6.9247 -9.4345 1.8824 18 6 6.5069 -10.8686 1.5511 19 6 5.0249 -11.0573 1.8815 20 6 4.1892 -10.0785 1.0542 21 7 3.7317 -7.6200 -0.7268 22 8 2.9767 -6.7371 -1.0757 23 1 -0.4851 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6042 0.8894 27 1 2.8721 -3.6042 -0.8906 28 1 0.8542 -5.0445 -0.8914 29 1 0.8536 -5.0451 0.8886 30 1 4.4443 -8.4543 2.4464 31 1 6.2518 -8.6460 -0.0058 32 1 6.3866 -7.4340 1.2909 33 1 7.9804 -9.2999 1.6474 34 1 6.7619 -9.2447 2.9434 35 1 7.1019 -11.5659 2.1408 36 1 6.6696 -11.0585 0.4902 37 1 4.8621 -10.8675 2.9424 38 1 4.7272 -12.0789 1.6450 39 1 3.1335 -10.2133 1.2892 40 1 4.3520 -10.2684 -0.0068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594533200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:39 Heat of formation + Delta-G solvation = 18.154346 kcal Electronic energy + Delta-G solvation = -19347.594151 eV Core-core repulsion = 16356.707843 eV Total energy + Delta-G solvation = -2990.886308 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.36376 -38.91945 -35.82437 -35.01951 -33.06483 -31.70345 -31.06751 -30.38504 -27.73185 -24.51015 -24.25146 -22.88659 -22.75381 -21.08628 -20.37442 -19.64350 -17.75840 -17.32841 -16.30772 -15.88665 -14.80623 -14.66356 -14.48319 -14.46523 -14.32143 -13.98465 -13.08219 -12.79897 -12.59772 -12.50859 -12.49944 -12.07149 -11.56826 -11.48096 -11.40764 -11.34883 -10.92021 -10.90279 -10.86022 -10.77023 -10.58912 -10.56247 -10.40505 -9.83412 -9.77095 -9.37660 -9.11652 -8.38422 -6.03647 -4.06142 1.36371 2.40523 3.08326 3.31081 3.37512 3.41096 3.65274 4.15831 4.43815 4.46161 4.48222 4.60600 4.90142 4.95362 5.12824 5.17479 5.21240 5.22674 5.32703 5.35272 5.48181 5.58413 5.65387 5.72664 5.78002 5.82210 5.85109 5.85912 5.95764 6.00166 6.10365 6.15468 6.22571 6.50143 6.63942 6.95014 7.60355 7.72130 7.94904 8.36511 8.37542 9.00087 9.58344 11.07665 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.038174 B = 0.003114 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.303660 B = 8990.049754 C = 9395.476765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.106 4.106 11 C -0.033 4.033 12 C 0.204 3.796 13 N -0.491 5.491 14 C 0.171 3.829 15 C 0.007 3.993 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.111 4.111 21 N -0.391 5.391 22 O 0.070 5.930 23 H 0.261 0.739 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.214 -20.865 2.706 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.072 4.072 12 C -0.016 4.016 13 N -0.225 5.225 14 C -0.102 4.102 15 C -0.013 4.013 16 C -0.150 4.150 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.149 4.149 21 N -0.101 5.101 22 O 0.013 5.987 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.563 -21.354 2.616 23.544 hybrid contribution 0.274 1.170 -0.079 1.204 sum 9.837 -20.184 2.537 22.597 Atomic orbital electron populations 1.69950 1.06031 1.26725 1.50702 1.25001 0.94859 0.99276 0.95223 0.86588 0.79865 0.83398 0.78135 1.20631 1.21186 1.19868 1.21202 0.93085 0.90912 1.50835 0.92637 1.19104 0.93778 0.90800 0.97733 1.21734 0.99560 0.91675 1.01517 1.20643 0.93434 0.87574 1.05548 1.29335 0.96036 0.96141 0.80087 1.71946 1.12465 1.08991 1.29071 1.25757 0.98355 0.97547 0.88527 1.19550 0.92583 0.90861 0.98273 1.21585 0.92503 0.99950 1.01002 1.21519 0.99332 0.94470 1.00132 1.21572 0.96017 0.96652 1.01673 1.21522 0.94937 0.98867 1.00118 1.21577 0.99835 0.92513 1.00993 1.74527 1.11811 1.08094 1.15679 1.85288 1.42928 1.34368 1.36089 0.92919 0.96070 0.96073 0.92376 0.92577 0.88309 0.87490 0.88253 0.91190 0.91504 0.91541 0.91606 0.91849 0.91852 0.91613 0.91601 0.91679 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.07 5.14 -26.73 -0.14 -2.21 16 11 C -0.03 -0.52 5.84 -27.88 -0.16 -0.68 16 12 C 0.20 3.30 7.77 -13.06 -0.10 3.20 16 13 N -0.49 -8.22 11.55 -9.87 -0.11 -8.33 16 14 C 0.17 2.59 6.72 -156.37 -1.05 1.54 16 15 C 0.01 0.09 2.66 -91.77 -0.24 -0.16 16 16 C -0.11 -1.16 5.19 -26.73 -0.14 -1.29 16 17 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 18 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 19 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 20 C -0.11 -1.08 5.18 -26.73 -0.14 -1.22 16 21 N -0.39 -6.28 12.16 30.90 0.38 -5.90 16 22 O 0.07 1.14 11.31 18.11 0.20 1.34 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 28 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 329.43 15.07 4.96 4.96 Total: -1.00 -30.16 329.43 -8.58 -38.74 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -6.73 Total: -4.84 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -3.00 Total: -16.78 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 1.00 Total: -39.83 kcal Atomic # 8 Polarization: 1.14 SS G_CDS: 0.20 Total: 1.34 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.16 -8.58 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594533200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.892 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds