Wall clock time and date at job start Mon Mar 30 2020 07:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47004 * 2 1 4 4 C 1.50700 * 109.47202 * 119.99354 * 2 1 3 5 5 H 1.08007 * 119.99886 * 119.99883 * 4 2 1 6 6 C 1.37871 * 120.00486 * 300.00263 * 4 2 1 7 7 N 1.31519 * 120.00352 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99758 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47037 * 90.00162 * 8 6 4 10 10 H 1.48497 * 109.47013 * 210.00152 * 8 6 4 11 11 H 1.48496 * 109.47089 * 330.00059 * 8 6 4 12 12 C 1.50690 * 109.47087 * 239.99802 * 2 1 3 13 13 N 1.31128 * 126.55541 * 120.30155 * 12 2 1 14 14 C 1.34495 * 105.61851 * 180.12070 * 13 12 2 15 15 C 1.50701 * 126.28775 * 179.90154 * 14 13 12 16 16 C 1.45537 * 108.89464 * 119.71588 * 15 14 13 17 17 C 1.54246 * 112.40731 * 182.68927 * 16 15 14 18 18 C 1.50470 * 108.51998 * 280.01038 * 17 16 15 19 19 C 1.54066 * 112.49875 * 94.14981 * 18 17 16 20 20 C 1.54065 * 112.81762 * 318.28617 * 19 18 17 21 21 C 1.50473 * 112.49668 * 318.28045 * 20 19 18 22 22 N 1.29947 * 107.42374 * 359.64114 * 14 13 12 23 23 O 1.21300 * 110.25126 * 0.22568 * 22 14 13 24 24 H 1.08997 * 109.47050 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46972 * 299.99997 * 1 2 3 26 26 H 1.08998 * 109.46988 * 59.99907 * 1 2 3 27 27 H 0.97002 * 119.99692 * 179.97438 * 7 6 4 28 28 H 1.08998 * 108.79330 * 1.15621 * 15 14 13 29 29 H 1.09001 * 108.89677 * 61.93671 * 16 15 14 30 30 H 1.08997 * 108.89347 * 303.44159 * 16 15 14 31 31 H 1.09003 * 109.62847 * 39.72340 * 17 16 15 32 32 H 1.09001 * 109.62858 * 160.30016 * 17 16 15 33 33 H 1.08997 * 108.87385 * 214.92923 * 18 17 16 34 34 H 1.09001 * 108.87633 * 333.37109 * 18 17 16 35 35 H 1.09005 * 108.81522 * 197.41965 * 19 18 17 36 36 H 1.09004 * 108.72741 * 79.08765 * 19 18 17 37 37 H 1.08999 * 108.87394 * 197.50477 * 20 19 18 38 38 H 1.08996 * 108.87702 * 79.05995 * 20 19 18 39 39 H 1.09006 * 109.62936 * 334.44242 * 21 20 19 40 40 H 1.09001 * 109.63058 * 213.86300 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 2.1382 -0.8588 3.5566 8 14 0.6259 1.2800 2.6541 9 1 -0.8019 0.8746 2.6993 10 1 0.9772 1.9956 3.9069 11 1 0.8491 2.1774 1.4922 12 6 2.0323 -0.7104 -1.2304 13 7 2.7937 -0.2024 -2.1694 14 6 2.9816 -1.1936 -3.0589 15 6 3.7894 -1.1114 -4.3284 16 6 4.8662 -2.0885 -4.2659 17 6 5.7874 -2.0281 -5.5016 18 6 5.1206 -2.7651 -6.6313 19 6 4.3080 -1.8299 -7.5471 20 6 3.5058 -0.7743 -6.7623 21 6 2.8534 -1.3443 -5.5320 22 7 2.3432 -2.2368 -2.6197 23 8 1.7912 -1.9802 -1.5705 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.9041 -0.5271 4.4376 28 1 4.2219 -0.1139 -4.4055 29 1 4.4337 -3.0866 -4.1966 30 1 5.4616 -1.9009 -3.3723 31 1 5.9491 -0.9887 -5.7874 32 1 6.7424 -2.4998 -5.2698 33 1 5.8851 -3.2645 -7.2264 34 1 4.4524 -3.5189 -6.2148 35 1 3.6157 -2.4303 -8.1374 36 1 4.9939 -1.3192 -8.2230 37 1 2.7337 -0.3630 -7.4125 38 1 4.1784 0.0300 -6.4643 39 1 2.6892 -2.4135 -5.6666 40 1 1.9009 -0.8439 -5.3574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594733700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:25 Heat of formation + Delta-G solvation = 40.950940 kcal Electronic energy + Delta-G solvation = -20272.337722 eV Core-core repulsion = 17282.439949 eV Total energy + Delta-G solvation = -2989.897773 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.82421 -39.21086 -35.45160 -34.99225 -32.83715 -32.26169 -31.66273 -29.99841 -25.54994 -25.36155 -24.83051 -23.71450 -22.62649 -21.19499 -19.53932 -19.26419 -17.39963 -16.86636 -16.53848 -15.93546 -15.17009 -14.84343 -14.65993 -14.15831 -13.98568 -13.40636 -13.15053 -13.03694 -12.46301 -12.39787 -12.26801 -11.91600 -11.75134 -11.43007 -11.31086 -11.02994 -10.88157 -10.70726 -10.64522 -10.51391 -10.47859 -10.40701 -10.31449 -10.19376 -9.70889 -9.51422 -9.01734 -8.73967 -6.25767 -4.30883 1.92987 2.91694 3.16660 3.26483 3.29792 3.72104 4.01486 4.23375 4.42063 4.63865 4.75354 4.77085 4.99318 5.04953 5.10834 5.17582 5.22122 5.31203 5.37325 5.62830 5.64250 5.82800 5.87089 5.93094 6.01351 6.04543 6.06539 6.08688 6.11158 6.17547 6.22913 6.29166 6.32846 6.37928 6.55292 6.65040 6.68580 7.08096 7.34989 8.22953 8.73132 8.91301 9.29521 10.86354 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.043022 B = 0.004232 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.671978 B = 6614.036989 C = 6858.888820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.094 3.906 3 H 0.074 0.926 4 C -0.527 4.527 5 H 0.080 0.920 6 C 0.081 3.919 7 N -0.886 5.886 8 Si 0.885 3.115 9 H -0.273 1.273 10 H -0.292 1.292 11 H -0.262 1.262 12 C 0.246 3.754 13 N -0.512 5.512 14 C 0.160 3.840 15 C 0.017 3.983 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.106 4.106 22 N -0.402 5.402 23 O 0.073 5.927 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.269 0.731 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 0.120 -18.518 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.074 3.926 3 H 0.092 0.908 4 C -0.565 4.565 5 H 0.098 0.902 6 C -0.123 4.123 7 N -0.522 5.522 8 Si 0.715 3.285 9 H -0.200 1.200 10 H -0.219 1.219 11 H -0.187 1.187 12 C 0.028 3.972 13 N -0.245 5.245 14 C -0.113 4.113 15 C -0.003 4.003 16 C -0.155 4.155 17 C -0.149 4.149 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.144 4.144 22 N -0.114 5.114 23 O 0.019 5.981 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.782 -0.342 -18.918 19.125 hybrid contribution -0.617 0.762 0.551 1.125 sum 2.165 0.420 -18.367 18.499 Atomic orbital electron populations 1.22209 0.96441 1.02298 0.99968 1.18137 0.92919 0.95965 0.85614 0.90807 1.20670 1.33935 1.14398 0.87543 0.90183 1.24874 0.95377 0.96686 0.95344 1.69860 1.44325 1.39911 0.98115 0.86874 0.80667 0.83340 0.77662 1.19961 1.21871 1.18726 1.29333 0.90312 0.81290 0.96305 1.71937 1.18867 1.29930 1.03795 1.25768 1.00259 0.85976 0.99325 1.18475 0.93308 1.01778 0.86720 1.20549 0.96355 0.99788 0.98793 1.21279 0.98004 1.01246 0.94419 1.21377 0.99070 0.98490 0.96956 1.21916 0.98409 0.97221 0.97797 1.21319 0.99259 0.98417 0.96527 1.21353 0.97878 1.02188 0.92989 1.74496 1.13960 1.24037 0.98872 1.85269 1.54252 1.30200 1.28425 0.91638 0.92478 0.94301 0.92053 0.88854 0.91249 0.91808 0.91374 0.91618 0.92399 0.91876 0.92379 0.92344 0.92055 0.91732 0.90909 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.66 37.16 0.32 -2.76 16 2 C 0.09 2.18 2.36 -92.93 -0.22 1.96 16 3 H 0.07 1.70 7.20 -51.93 -0.37 1.33 16 4 C -0.53 -14.28 9.13 -34.44 -0.31 -14.60 16 5 H 0.08 2.40 7.98 -52.48 -0.42 1.98 16 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 7 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 8 Si 0.89 20.32 24.37 -169.99 -4.14 16.17 16 9 H -0.27 -6.01 6.87 56.52 0.39 -5.63 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.26 -5.69 6.53 56.52 0.37 -5.32 16 12 C 0.25 5.50 6.96 -13.06 -0.09 5.41 16 13 N -0.51 -10.91 11.55 -9.87 -0.11 -11.02 16 14 C 0.16 3.03 6.48 -156.37 -1.01 2.01 16 15 C 0.02 0.24 2.15 -94.64 -0.20 0.04 16 16 C -0.12 -1.50 4.42 -29.60 -0.13 -1.63 16 17 C -0.11 -1.09 5.61 -27.34 -0.15 -1.25 16 18 C -0.12 -1.08 5.31 -27.44 -0.15 -1.23 16 19 C -0.12 -0.97 5.85 -25.62 -0.15 -1.12 16 20 C -0.12 -1.11 5.31 -27.44 -0.15 -1.26 16 21 C -0.11 -1.28 4.97 -27.34 -0.14 -1.41 16 22 N -0.40 -8.20 12.15 30.90 0.38 -7.83 16 23 O 0.07 1.62 11.31 18.08 0.20 1.83 16 24 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.06 1.18 3.27 -51.93 -0.17 1.01 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.09 1.28 7.47 -51.93 -0.39 0.89 16 29 H 0.07 0.95 7.47 -51.93 -0.39 0.56 16 30 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.07 0.63 6.98 -51.93 -0.36 0.27 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.62 6.63 -51.93 -0.34 0.27 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.60 6.63 -51.93 -0.34 0.26 16 39 H 0.07 0.89 6.98 -51.93 -0.36 0.53 16 40 H 0.06 0.84 7.97 -51.93 -0.41 0.43 16 LS Contribution 308.51 15.07 4.65 4.65 Total: -1.00 -28.96 308.51 -6.86 -35.82 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.13 Total: -0.80 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -2.48 Total: -13.71 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 1.04 Total: -43.96 kcal Atomic # 8 Polarization: 1.62 SS G_CDS: 0.20 Total: 1.83 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.14 Total: 16.17 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.96 -6.86 -35.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594733700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.772 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds