Wall clock time and date at job start Mon Mar 30 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.51534 * 121.03205 * 2 1 4 4 C 1.53894 * 107.75022 * 134.58091 * 3 2 1 5 5 H 1.09006 * 112.39896 * 181.77354 * 4 3 2 6 6 C 1.54061 * 107.83969 * 305.66130 * 4 3 2 7 7 C 1.54234 * 105.01233 * 90.56960 * 6 4 3 8 8 C 1.54462 * 104.97835 * 359.80466 * 7 6 4 9 9 H 1.08996 * 112.03113 * 145.49505 * 8 7 6 10 10 C 1.52367 * 120.97247 * 179.71668 * 2 1 3 11 11 N 1.48194 * 104.54857 * 23.94120 * 8 7 6 12 12 C 1.34773 * 127.84536 * 140.28748 * 11 8 7 13 13 O 1.21591 * 120.00000 * 0.02562 * 12 11 8 14 14 N 1.34777 * 120.00462 * 180.02562 * 12 11 8 15 15 C 1.46500 * 120.00376 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47473 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47432 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46890 * 120.00210 * 21 19 17 24 24 H 1.48501 * 109.47062 * 240.00257 * 21 19 17 25 25 H 1.08004 * 119.99718 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00240 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.80294 * 15.02049 * 3 2 1 28 28 H 1.09001 * 109.80695 * 254.14428 * 3 2 1 29 29 H 1.08999 * 110.47980 * 331.59622 * 6 4 3 30 30 H 1.08999 * 110.24270 * 209.41727 * 6 4 3 31 31 H 1.09003 * 110.33801 * 240.93219 * 7 6 4 32 32 H 1.09003 * 110.43325 * 118.72794 * 7 6 4 33 33 H 1.09003 * 109.75420 * 105.92110 * 10 2 1 34 34 H 1.09001 * 109.98804 * 344.96202 * 10 2 1 35 35 H 0.97004 * 120.00228 * 0.02562 * 14 12 11 36 36 H 1.09002 * 109.47129 * 59.99747 * 15 14 12 37 37 H 1.08998 * 109.46845 * 300.00553 * 15 14 12 38 38 H 1.09002 * 109.47153 * 59.99757 * 16 15 14 39 39 H 1.09001 * 109.46832 * 299.99948 * 16 15 14 40 40 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0912 1.2985 0.0000 4 6 3.2146 1.1701 1.0439 5 1 3.8086 2.0801 1.1289 6 6 2.5689 0.7762 2.3861 7 6 2.5726 -0.7661 2.3938 8 6 3.2173 -1.1705 1.0497 9 1 3.8134 -2.0786 1.1390 10 6 2.0941 -1.3064 0.0065 11 7 4.0410 -0.0002 0.6649 12 6 5.2661 -0.0001 0.1032 13 8 5.8211 -1.0530 -0.1454 14 7 5.8762 1.1671 -0.1830 15 6 7.2077 1.1672 -0.7941 16 6 7.6685 2.6097 -1.0126 17 6 9.0384 2.6097 -1.6407 18 1 9.5309 1.6744 -1.8623 19 6 9.6626 3.8038 -1.9334 20 7 9.0626 4.9427 -1.6640 21 14 11.3603 3.8038 -2.7125 22 1 11.8128 2.4037 -2.9135 23 1 11.3030 4.4981 -4.0240 24 1 12.3145 4.5095 -1.8200 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.4328 2.1255 0.2658 28 1 2.5217 1.4705 -0.9865 29 1 1.5477 1.1531 2.4432 30 1 3.1610 1.1607 3.2166 31 1 1.5531 -1.1471 2.4547 32 1 3.1668 -1.1411 3.2271 33 1 2.5250 -1.4823 -0.9792 34 1 1.4376 -2.1336 0.2763 35 1 5.4338 2.0072 0.0156 36 1 7.1677 0.6491 -1.7523 37 1 7.9101 0.6576 -0.1346 38 1 7.7086 3.1274 -0.0542 39 1 6.9661 3.1195 -1.6720 40 1 9.5019 5.7827 -1.8696 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595579633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:00 Heat of formation + Delta-G solvation = -17.750407 kcal Electronic energy + Delta-G solvation = -20219.740680 eV Core-core repulsion = 17227.297426 eV Total energy + Delta-G solvation = -2992.443254 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.90525 -38.41148 -34.80431 -34.20291 -32.89002 -31.75486 -31.38864 -29.27326 -27.52830 -24.80982 -24.58533 -22.47639 -21.11863 -20.56978 -19.99414 -18.63374 -17.16088 -16.39704 -15.95149 -15.42309 -15.03410 -14.56042 -14.52816 -14.17672 -13.92976 -13.73942 -13.34017 -13.03336 -12.86329 -12.56918 -12.28519 -12.08745 -11.85768 -11.42510 -11.19213 -11.09810 -11.02655 -10.60004 -10.58407 -10.53662 -10.31042 -9.87371 -9.53668 -9.37994 -9.22942 -8.66703 -8.44142 -8.14209 -6.08128 -4.10481 2.09205 2.85489 3.29516 3.37072 3.42701 3.58832 4.19724 4.35829 4.41639 4.55248 4.72798 4.79132 4.85475 4.88811 5.11119 5.21027 5.29185 5.39699 5.51228 5.58253 5.64517 5.70820 5.72484 5.79540 5.88460 5.93382 6.00091 6.23767 6.42041 6.42957 6.48695 6.69729 6.79198 7.03594 7.39137 7.59175 7.64794 7.91328 8.27681 8.42953 8.94651 9.03474 9.54263 11.03642 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.036322 B = 0.003857 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.705044 B = 7257.536085 C = 7494.894125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.099 4.099 4 C 0.132 3.868 5 H 0.096 0.904 6 C -0.126 4.126 7 C -0.128 4.128 8 C 0.155 3.845 9 H 0.101 0.899 10 C -0.097 4.097 11 N -0.637 5.637 12 C 0.722 3.278 13 O -0.596 6.596 14 N -0.737 5.737 15 C 0.140 3.860 16 C 0.013 3.987 17 C -0.519 4.519 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.896 3.104 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.391 0.609 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.674 -7.576 7.661 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.104 4.104 3 C -0.137 4.137 4 C 0.027 3.973 5 H 0.114 0.886 6 C -0.165 4.165 7 C -0.166 4.166 8 C 0.051 3.949 9 H 0.119 0.881 10 C -0.135 4.135 11 N -0.376 5.376 12 C 0.424 3.576 13 O -0.475 6.475 14 N -0.390 5.390 15 C 0.018 3.982 16 C -0.024 4.024 17 C -0.558 4.558 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.209 1.209 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.225 0.775 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.052 -8.162 7.384 21.143 hybrid contribution 0.621 0.650 -0.396 0.983 sum -17.430 -7.512 6.989 20.226 Atomic orbital electron populations 1.23528 0.94734 1.01707 1.04182 1.22074 0.94753 0.95530 0.98076 1.21454 0.96945 0.95150 1.00163 1.22064 0.91107 0.90276 0.93831 0.88567 1.22434 1.01234 0.96016 0.96775 1.22535 1.01138 0.95897 0.97055 1.21939 0.90040 0.90211 0.92760 0.88117 1.21586 0.96783 0.94814 1.00366 1.48262 1.16073 1.07590 1.65645 1.15525 0.79020 0.84907 0.78100 1.90887 1.65228 1.30890 1.60477 1.45544 1.20995 1.06102 1.66377 1.21599 0.79325 1.01178 0.96144 1.19325 0.96697 0.88889 0.97526 1.21094 1.01373 0.92737 1.40601 0.92155 1.24993 0.98130 0.95499 0.95682 1.69967 1.38127 0.97293 1.47982 0.86459 0.83949 0.78249 0.78928 1.19558 1.20953 1.20947 0.88501 0.88557 0.90198 0.90236 0.90300 0.91073 0.90376 0.91145 0.90369 0.90386 0.77497 0.92796 0.92792 0.96007 0.96008 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 14.01 29.01 0.41 -1.27 16 2 C -0.10 -1.00 4.15 -99.83 -0.41 -1.42 16 3 C -0.10 -0.99 5.60 -27.01 -0.15 -1.14 16 4 C 0.13 1.43 3.91 -65.98 -0.26 1.18 16 5 H 0.10 1.02 6.89 -51.93 -0.36 0.66 16 6 C -0.13 -1.12 6.06 -25.53 -0.15 -1.27 16 7 C -0.13 -1.16 6.09 -25.32 -0.15 -1.31 16 8 C 0.16 1.83 4.05 -65.76 -0.27 1.56 16 9 H 0.10 1.31 7.92 -51.93 -0.41 0.90 16 10 C -0.10 -1.01 5.64 -26.59 -0.15 -1.16 16 11 N -0.64 -9.05 2.72 -159.15 -0.43 -9.48 16 12 C 0.72 13.54 8.57 -86.92 -0.74 12.79 16 13 O -0.60 -13.46 16.64 5.29 0.09 -13.37 16 14 N -0.74 -13.79 5.53 -65.23 -0.36 -14.15 16 15 C 0.14 3.11 5.61 -4.04 -0.02 3.09 16 16 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 17 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 18 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 21 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H 0.10 0.71 7.97 -52.48 -0.42 0.29 16 26 H 0.10 0.70 7.98 -52.49 -0.42 0.28 16 27 H 0.08 0.65 7.96 -51.93 -0.41 0.23 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.08 0.59 7.70 -51.93 -0.40 0.19 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.59 7.71 -51.93 -0.40 0.19 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.65 7.98 -51.93 -0.41 0.24 16 35 H 0.39 6.45 6.88 -40.82 -0.28 6.17 16 36 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 322.59 15.07 4.86 4.86 Total: -1.00 -32.23 322.59 -9.03 -41.26 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.44 Total: 2.00 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.46 Total: -2.10 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.06 Total: -49.16 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.23 -9.03 -41.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595579633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.508 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds