Wall clock time and date at job start Mon Mar 30 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.51534 * 121.03205 * 2 1 4 4 C 1.53894 * 107.75022 * 134.58091 * 3 2 1 5 5 H 1.09006 * 112.39896 * 181.77354 * 4 3 2 6 6 C 1.54061 * 107.83969 * 305.66130 * 4 3 2 7 7 C 1.54234 * 105.01233 * 90.56960 * 6 4 3 8 8 C 1.54462 * 104.97835 * 359.80466 * 7 6 4 9 9 H 1.08996 * 112.03113 * 145.49505 * 8 7 6 10 10 C 1.52367 * 120.97247 * 179.71668 * 2 1 3 11 11 N 1.48194 * 104.54857 * 23.94120 * 8 7 6 12 12 C 1.34773 * 127.84536 * 140.28748 * 11 8 7 13 13 O 1.21591 * 120.00000 * 0.02562 * 12 11 8 14 14 N 1.34777 * 120.00462 * 180.02562 * 12 11 8 15 15 C 1.46500 * 120.00376 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47473 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47432 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46890 * 120.00210 * 21 19 17 24 24 H 1.48501 * 109.47062 * 240.00257 * 21 19 17 25 25 H 1.08004 * 119.99718 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00240 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.80294 * 15.02049 * 3 2 1 28 28 H 1.09001 * 109.80695 * 254.14428 * 3 2 1 29 29 H 1.08999 * 110.47980 * 331.59622 * 6 4 3 30 30 H 1.08999 * 110.24270 * 209.41727 * 6 4 3 31 31 H 1.09003 * 110.33801 * 240.93219 * 7 6 4 32 32 H 1.09003 * 110.43325 * 118.72794 * 7 6 4 33 33 H 1.09003 * 109.75420 * 105.92110 * 10 2 1 34 34 H 1.09001 * 109.98804 * 344.96202 * 10 2 1 35 35 H 0.97004 * 120.00228 * 0.02562 * 14 12 11 36 36 H 1.09002 * 109.47129 * 59.99747 * 15 14 12 37 37 H 1.08998 * 109.46845 * 300.00553 * 15 14 12 38 38 H 1.09002 * 109.47153 * 59.99757 * 16 15 14 39 39 H 1.09001 * 109.46832 * 299.99948 * 16 15 14 40 40 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0912 1.2985 0.0000 4 6 3.2146 1.1701 1.0439 5 1 3.8086 2.0801 1.1289 6 6 2.5689 0.7762 2.3861 7 6 2.5726 -0.7661 2.3938 8 6 3.2173 -1.1705 1.0497 9 1 3.8134 -2.0786 1.1390 10 6 2.0941 -1.3064 0.0065 11 7 4.0410 -0.0002 0.6649 12 6 5.2661 -0.0001 0.1032 13 8 5.8211 -1.0530 -0.1454 14 7 5.8762 1.1671 -0.1830 15 6 7.2077 1.1672 -0.7941 16 6 7.6685 2.6097 -1.0126 17 6 9.0384 2.6097 -1.6407 18 1 9.5309 1.6744 -1.8623 19 6 9.6626 3.8038 -1.9334 20 7 9.0626 4.9427 -1.6640 21 14 11.3603 3.8038 -2.7125 22 1 11.8128 2.4037 -2.9135 23 1 11.3030 4.4981 -4.0240 24 1 12.3145 4.5095 -1.8200 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.4328 2.1255 0.2658 28 1 2.5217 1.4705 -0.9865 29 1 1.5477 1.1531 2.4432 30 1 3.1610 1.1607 3.2166 31 1 1.5531 -1.1471 2.4547 32 1 3.1668 -1.1411 3.2271 33 1 2.5250 -1.4823 -0.9792 34 1 1.4376 -2.1336 0.2763 35 1 5.4338 2.0072 0.0156 36 1 7.1677 0.6491 -1.7523 37 1 7.9101 0.6576 -0.1346 38 1 7.7086 3.1274 -0.0542 39 1 6.9661 3.1195 -1.6720 40 1 9.5019 5.7827 -1.8696 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595579633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:00 Heat of formation + Delta-G solvation = -37.490153 kcal Electronic energy + Delta-G solvation = -20220.596660 eV Core-core repulsion = 17227.297426 eV Total energy + Delta-G solvation = -2993.299234 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.94743 -39.79467 -36.60393 -35.11830 -34.78885 -32.83249 -32.43897 -31.02231 -28.38657 -26.68453 -25.43951 -23.76714 -22.82614 -21.52080 -21.10167 -19.94204 -18.50269 -18.09334 -17.01629 -16.83520 -16.50802 -16.36398 -15.49756 -15.32057 -15.24297 -14.76477 -14.58952 -14.34548 -14.23977 -13.79355 -13.42147 -13.21344 -13.00862 -12.89564 -12.61944 -12.51492 -12.27482 -12.20341 -11.93921 -11.67525 -11.50940 -11.33979 -11.31080 -11.16853 -10.61990 -10.31680 -10.01581 -9.39683 -8.24989 -6.35405 1.39805 1.40889 1.41411 1.53998 1.59867 2.11979 2.40332 3.00741 3.09805 3.54016 3.60045 3.92461 4.01360 4.05949 4.16348 4.29688 4.38025 4.44667 4.48051 4.55990 4.74878 4.78749 4.82692 4.88897 4.97679 5.01745 5.04822 5.11006 5.20398 5.22440 5.28958 5.44551 5.50964 5.56225 5.76822 5.77939 5.98505 6.11206 6.17285 6.77376 6.99487 7.33966 7.54482 8.87284 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.036322 B = 0.003857 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.705044 B = 7257.536085 C = 7494.894125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.127 4.127 3 C -0.095 4.095 4 C 0.122 3.878 5 H 0.095 0.905 6 C -0.118 4.118 7 C -0.118 4.118 8 C 0.143 3.857 9 H 0.080 0.920 10 C -0.091 4.091 11 N -0.635 5.635 12 C 0.717 3.283 13 O -0.642 6.642 14 N -0.732 5.732 15 C 0.161 3.839 16 C 0.026 3.974 17 C -0.547 4.547 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.966 3.034 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.275 1.275 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.102 0.898 35 H 0.403 0.597 36 H 0.041 0.959 37 H 0.043 0.957 38 H 0.009 0.991 39 H 0.008 0.992 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.490 -7.347 8.411 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.127 4.127 3 C -0.133 4.133 4 C 0.018 3.982 5 H 0.113 0.887 6 C -0.156 4.156 7 C -0.156 4.156 8 C 0.039 3.961 9 H 0.098 0.902 10 C -0.129 4.129 11 N -0.372 5.372 12 C 0.420 3.580 13 O -0.524 6.524 14 N -0.387 5.387 15 C 0.037 3.963 16 C -0.011 4.011 17 C -0.585 4.585 18 H 0.076 0.924 19 C -0.190 4.190 20 N -0.565 5.565 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.124 0.876 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.238 0.762 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.937 -7.917 8.165 22.953 hybrid contribution 1.063 0.569 -0.616 1.354 sum -18.874 -7.348 7.549 21.615 Atomic orbital electron populations 1.23750 0.93973 1.03036 1.00748 1.21948 0.95242 0.94524 1.00997 1.21419 0.96844 0.96534 0.98479 1.22396 0.91060 0.88997 0.95698 0.88660 1.22432 1.02397 0.95695 0.95117 1.22505 1.02121 0.96104 0.94879 1.22218 0.89988 0.88702 0.95181 0.90212 1.21515 0.96583 0.96584 0.98256 1.48311 1.14746 1.10188 1.63913 1.15639 0.80246 0.83896 0.78256 1.90841 1.66923 1.32237 1.62447 1.45236 1.19996 1.06993 1.66471 1.21088 0.80858 0.98823 0.95537 1.19111 0.95648 0.90218 0.96160 1.21474 1.02707 0.93005 1.41317 0.92366 1.25864 1.02204 0.95002 0.95980 1.70063 1.39878 0.97943 1.48655 0.85379 0.78925 0.78474 0.78161 1.19053 1.20130 1.20086 0.87079 0.87253 0.87645 0.92631 0.87815 0.90805 0.87898 0.91124 0.93302 0.87928 0.76173 0.94020 0.93895 0.97302 0.97391 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 14.01 67.78 0.95 -1.26 16 2 C -0.13 -2.13 4.15 -15.69 -0.07 -2.20 16 3 C -0.09 -1.72 5.60 30.42 0.17 -1.55 16 4 C 0.12 2.50 3.91 45.33 0.18 2.68 16 5 H 0.10 1.95 6.89 -2.38 -0.02 1.93 16 6 C -0.12 -1.76 6.06 31.37 0.19 -1.57 16 7 C -0.12 -1.85 6.09 31.51 0.19 -1.66 16 8 C 0.14 3.31 4.05 45.47 0.18 3.49 16 9 H 0.08 2.15 7.92 -2.39 -0.02 2.14 16 10 C -0.09 -1.80 5.64 30.69 0.17 -1.63 16 11 N -0.63 -18.22 2.72 -775.69 -2.11 -20.33 16 12 C 0.72 27.93 8.57 179.06 1.53 29.46 16 13 O -0.64 -30.39 16.64 -4.00 -0.07 -30.46 16 14 N -0.73 -28.44 5.53 -478.54 -2.65 -31.08 16 15 C 0.16 7.44 5.61 86.38 0.48 7.92 16 16 C 0.03 1.36 5.09 29.85 0.15 1.52 16 17 C -0.55 -31.24 9.11 25.60 0.23 -31.01 16 18 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 19 C 0.01 0.47 5.46 84.66 0.46 0.93 16 20 N -0.93 -54.67 13.29 21.45 0.28 -54.39 16 21 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 25 H 0.11 1.11 7.97 -2.91 -0.02 1.09 16 26 H 0.11 1.11 7.98 -2.91 -0.02 1.08 16 27 H 0.11 1.37 7.96 -2.38 -0.02 1.35 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.10 1.09 7.70 -2.39 -0.02 1.07 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 1.15 7.71 -2.39 -0.02 1.13 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 34 H 0.10 1.48 7.98 -2.39 -0.02 1.46 16 35 H 0.40 13.65 6.88 -92.71 -0.64 13.01 16 36 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -70.82 322.59 2.70 -68.13 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.38 Total: 16.83 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 4.84 Total: 5.12 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -4.48 Total: -105.80 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.07 Total: -30.46 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -70.82 2.70 -68.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595579633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.635 kcal (2) G-P(sol) polarization free energy of solvation -70.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds