Wall clock time and date at job start Mon Mar 30 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47242 * 2 1 4 4 C 1.50705 * 109.47074 * 120.00256 * 2 1 3 5 5 H 1.07995 * 119.99840 * 114.36018 * 4 2 1 6 6 C 1.37881 * 119.99568 * 294.35615 * 4 2 1 7 7 N 1.31514 * 119.99652 * 156.87606 * 6 4 2 8 8 Si 1.86805 * 120.00209 * 336.87146 * 6 4 2 9 9 H 1.48500 * 109.47020 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.46772 * 60.00077 * 8 6 4 11 11 H 1.48497 * 109.47085 * 300.00578 * 8 6 4 12 12 C 1.50701 * 109.46759 * 239.99867 * 2 1 3 13 13 N 1.31134 * 126.54959 * 119.71931 * 12 2 1 14 14 C 1.34498 * 105.61214 * 179.91538 * 13 12 2 15 15 C 1.50702 * 126.28186 * 180.12502 * 14 13 12 16 16 C 1.53000 * 109.46773 * 240.28392 * 15 14 13 17 17 C 1.53005 * 109.46945 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.46805 * 60.00330 * 17 16 15 19 19 C 1.53005 * 109.46805 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47099 * 299.99575 * 18 17 16 21 21 C 1.53001 * 109.46784 * 120.28510 * 15 14 13 22 22 N 1.29940 * 107.42743 * 0.34270 * 14 13 12 23 23 O 1.21304 * 110.24987 * 359.78635 * 22 14 13 24 24 H 1.09003 * 109.47338 * 293.17451 * 1 2 3 25 25 H 1.08997 * 109.47662 * 53.17723 * 1 2 3 26 26 H 1.09003 * 109.47433 * 173.17554 * 1 2 3 27 27 H 0.96999 * 120.00365 * 354.92438 * 7 6 4 28 28 H 1.08998 * 109.47330 * 0.28547 * 15 14 13 29 29 H 1.08998 * 109.47319 * 300.00161 * 16 15 14 30 30 H 1.09002 * 109.47362 * 60.00497 * 16 15 14 31 31 H 1.08992 * 109.47089 * 299.99678 * 17 16 15 32 32 H 1.09000 * 109.46639 * 179.97438 * 17 16 15 33 33 H 1.08998 * 109.47457 * 60.00007 * 18 17 16 34 34 H 1.09002 * 109.46821 * 179.97438 * 19 18 17 35 35 H 1.08997 * 109.47336 * 299.99411 * 19 18 17 36 36 H 1.08998 * 109.47107 * 59.99793 * 19 18 17 37 37 H 1.08998 * 109.47319 * 300.00516 * 20 18 17 38 38 H 1.08995 * 109.47335 * 180.02562 * 20 18 17 39 39 H 1.08992 * 109.47352 * 299.99480 * 21 15 14 40 40 H 1.08998 * 109.47157 * 59.99931 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5760 -1.6386 1.1339 6 6 1.7977 -0.1755 2.4794 7 7 1.8077 -0.9528 3.5402 8 14 1.4660 1.6535 2.6648 9 1 1.2472 1.9741 4.0982 10 1 0.2559 2.0186 1.8851 11 1 2.6315 2.4218 2.1584 12 6 2.0322 -0.7105 -1.2305 13 7 2.7849 -0.1993 -2.1748 14 6 2.9804 -1.1932 -3.0596 15 6 3.7869 -1.1104 -4.3300 16 6 2.8835 -1.4102 -5.5279 17 6 3.7024 -1.3268 -6.8177 18 6 4.8387 -2.3500 -6.7673 19 6 5.6580 -2.2661 -8.0568 20 6 5.7421 -2.0502 -5.5694 21 6 4.9237 -2.1332 -4.2799 22 7 2.3425 -2.2365 -2.6202 23 8 1.7910 -1.9801 -1.5706 24 1 -0.3634 0.4044 0.9448 25 1 -0.3634 0.6159 -0.8226 26 1 -0.3634 -1.0204 -0.1221 27 1 1.9066 -1.9123 3.4375 28 1 4.2038 -0.1084 -4.4311 29 1 2.4665 -2.4122 -5.4268 30 1 2.0736 -0.6815 -5.5636 31 1 4.1196 -0.3250 -6.9190 32 1 3.0589 -1.5408 -7.6710 33 1 4.4215 -3.3518 -6.6660 34 1 6.4679 -2.9948 -8.0207 35 1 5.0148 -2.4794 -8.9105 36 1 6.0753 -1.2642 -8.1576 37 1 6.1594 -1.0484 -5.6706 38 1 6.5520 -2.7788 -5.5337 39 1 5.5672 -1.9197 -3.4266 40 1 4.5067 -3.1352 -4.1788 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596585362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:40 Heat of formation + Delta-G solvation = 23.166189 kcal Electronic energy + Delta-G solvation = -20085.634559 eV Core-core repulsion = 17094.965581 eV Total energy + Delta-G solvation = -2990.668978 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.81581 -39.04368 -35.43566 -34.98064 -32.94642 -31.73843 -30.92987 -29.98072 -26.93624 -25.07321 -23.48496 -23.14321 -22.81015 -21.43590 -20.12504 -19.21007 -17.74404 -17.13101 -16.54624 -15.52247 -14.82287 -14.54812 -14.43633 -14.21099 -13.68063 -13.63172 -13.03787 -12.61882 -12.40154 -12.34411 -12.28066 -11.94711 -11.85781 -11.60982 -11.32802 -11.25748 -11.01564 -10.82247 -10.69935 -10.63943 -10.41232 -10.32964 -10.14125 -10.11843 -9.92656 -9.36265 -8.99143 -8.38521 -6.67287 -4.29220 1.92665 2.91040 3.31027 3.38531 3.51772 3.74932 4.05525 4.37021 4.48810 4.54031 4.65378 4.78731 5.00932 5.04335 5.12859 5.28423 5.31256 5.36060 5.38122 5.48715 5.55366 5.63436 5.73330 5.87838 5.90325 5.99541 6.05310 6.07755 6.12786 6.18352 6.21888 6.28983 6.36406 6.40364 6.57729 6.67543 6.84579 7.14233 7.67469 8.20083 8.66535 8.90999 9.37120 10.71714 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.042625 B = 0.004013 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.741238 B = 6974.892944 C = 7045.426799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.103 3.897 3 H 0.065 0.935 4 C -0.616 4.616 5 H 0.063 0.937 6 C 0.048 3.952 7 N -0.884 5.884 8 Si 1.032 2.968 9 H -0.280 1.280 10 H -0.272 1.272 11 H -0.278 1.278 12 C 0.247 3.753 13 N -0.515 5.515 14 C 0.164 3.836 15 C 0.011 3.989 16 C -0.110 4.110 17 C -0.110 4.110 18 C -0.095 4.095 19 C -0.147 4.147 20 C -0.111 4.111 21 C -0.112 4.112 22 N -0.404 5.404 23 O 0.069 5.931 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.054 0.946 27 H 0.274 0.726 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.814 0.090 -18.795 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.081 3.919 3 H 0.083 0.917 4 C -0.654 4.654 5 H 0.081 0.919 6 C -0.160 4.160 7 N -0.515 5.515 8 Si 0.859 3.141 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.028 3.972 13 N -0.249 5.249 14 C -0.110 4.110 15 C -0.009 4.009 16 C -0.149 4.149 17 C -0.148 4.148 18 C -0.114 4.114 19 C -0.204 4.204 20 C -0.148 4.148 21 C -0.150 4.150 22 N -0.116 5.116 23 O 0.015 5.985 24 H 0.088 0.912 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.766 0.813 -18.262 18.664 hybrid contribution 0.280 -1.259 -0.856 1.548 sum 4.046 -0.446 -19.118 19.546 Atomic orbital electron populations 1.22219 0.96155 1.01195 1.00996 1.18007 0.93284 0.95338 0.85225 0.91693 1.21698 1.42677 1.11146 0.89838 0.91890 1.25720 0.92825 1.05995 0.91493 1.70839 1.42149 1.06776 1.31712 0.84206 0.77669 0.75502 0.76768 1.20567 1.19809 1.20395 1.29540 0.90205 0.81205 0.96202 1.71951 1.19350 1.29785 1.03814 1.25640 1.00063 0.85939 0.99332 1.19450 0.93414 1.01414 0.86584 1.21568 0.97621 1.02570 0.93116 1.21577 0.96788 0.99454 0.96984 1.21183 0.95771 0.99645 0.94775 1.21827 0.99793 1.01758 0.97008 1.21570 0.97621 1.02014 0.93607 1.21564 0.96237 0.99159 0.98045 1.74481 1.14005 1.24181 0.98980 1.85255 1.54375 1.30410 1.28432 0.91159 0.94956 0.92729 0.91622 0.88606 0.91250 0.91710 0.91679 0.91710 0.91102 0.92773 0.92797 0.92684 0.91681 0.91670 0.91583 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.90 37.15 0.33 -2.73 16 2 C 0.10 2.40 2.37 -92.92 -0.22 2.18 16 3 H 0.07 1.50 6.72 -51.93 -0.35 1.15 16 4 C -0.62 -16.69 8.76 -34.44 -0.30 -16.99 16 5 H 0.06 1.87 7.99 -52.49 -0.42 1.46 16 6 C 0.05 1.31 5.19 -17.82 -0.09 1.21 16 7 N -0.88 -25.75 13.70 55.43 0.76 -24.99 16 8 Si 1.03 23.34 26.44 -169.99 -4.50 18.85 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.27 -5.57 6.15 56.52 0.35 -5.22 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 12 C 0.25 5.64 6.96 -13.05 -0.09 5.55 16 13 N -0.52 -11.21 11.55 -9.87 -0.11 -11.32 16 14 C 0.16 3.16 6.72 -156.37 -1.05 2.10 16 15 C 0.01 0.17 2.66 -91.77 -0.24 -0.08 16 16 C -0.11 -1.36 5.19 -26.73 -0.14 -1.50 16 17 C -0.11 -1.05 5.20 -26.73 -0.14 -1.19 16 18 C -0.10 -0.87 2.72 -90.62 -0.25 -1.11 16 19 C -0.15 -1.10 9.19 37.16 0.34 -0.75 16 20 C -0.11 -1.09 5.20 -26.75 -0.14 -1.23 16 21 C -0.11 -1.45 5.18 -26.75 -0.14 -1.59 16 22 N -0.40 -8.41 12.16 30.90 0.38 -8.04 16 23 O 0.07 1.57 11.31 18.11 0.20 1.78 16 24 H 0.07 1.47 5.48 -51.93 -0.28 1.18 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.27 7.97 8.73 -40.82 -0.36 7.62 16 28 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 320.79 15.07 4.83 4.83 Total: -1.00 -28.86 320.79 -7.17 -36.02 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.60 Total: -1.01 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -2.13 Total: -16.13 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 1.02 Total: -44.35 kcal Atomic # 8 Polarization: 1.57 SS G_CDS: 0.20 Total: 1.78 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.50 Total: 18.85 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.86 -7.17 -36.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596585362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.191 kcal (2) G-P(sol) polarization free energy of solvation -28.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds