Wall clock time and date at job start Mon Mar 30 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47242 * 2 1 4 4 C 1.50705 * 109.47074 * 120.00256 * 2 1 3 5 5 H 1.07995 * 119.99840 * 114.36018 * 4 2 1 6 6 C 1.37881 * 119.99568 * 294.35615 * 4 2 1 7 7 N 1.31514 * 119.99652 * 156.87606 * 6 4 2 8 8 Si 1.86805 * 120.00209 * 336.87146 * 6 4 2 9 9 H 1.48500 * 109.47020 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.46772 * 60.00077 * 8 6 4 11 11 H 1.48497 * 109.47085 * 300.00578 * 8 6 4 12 12 C 1.50701 * 109.46759 * 239.99867 * 2 1 3 13 13 N 1.31134 * 126.54959 * 119.71931 * 12 2 1 14 14 C 1.34498 * 105.61214 * 179.91538 * 13 12 2 15 15 C 1.50702 * 126.28186 * 180.12502 * 14 13 12 16 16 C 1.53000 * 109.46773 * 240.28392 * 15 14 13 17 17 C 1.53005 * 109.46945 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.46805 * 60.00330 * 17 16 15 19 19 C 1.53005 * 109.46805 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47099 * 299.99575 * 18 17 16 21 21 C 1.53001 * 109.46784 * 120.28510 * 15 14 13 22 22 N 1.29940 * 107.42743 * 0.34270 * 14 13 12 23 23 O 1.21304 * 110.24987 * 359.78635 * 22 14 13 24 24 H 1.09003 * 109.47338 * 293.17451 * 1 2 3 25 25 H 1.08997 * 109.47662 * 53.17723 * 1 2 3 26 26 H 1.09003 * 109.47433 * 173.17554 * 1 2 3 27 27 H 0.96999 * 120.00365 * 354.92438 * 7 6 4 28 28 H 1.08998 * 109.47330 * 0.28547 * 15 14 13 29 29 H 1.08998 * 109.47319 * 300.00161 * 16 15 14 30 30 H 1.09002 * 109.47362 * 60.00497 * 16 15 14 31 31 H 1.08992 * 109.47089 * 299.99678 * 17 16 15 32 32 H 1.09000 * 109.46639 * 179.97438 * 17 16 15 33 33 H 1.08998 * 109.47457 * 60.00007 * 18 17 16 34 34 H 1.09002 * 109.46821 * 179.97438 * 19 18 17 35 35 H 1.08997 * 109.47336 * 299.99411 * 19 18 17 36 36 H 1.08998 * 109.47107 * 59.99793 * 19 18 17 37 37 H 1.08998 * 109.47319 * 300.00516 * 20 18 17 38 38 H 1.08995 * 109.47335 * 180.02562 * 20 18 17 39 39 H 1.08992 * 109.47352 * 299.99480 * 21 15 14 40 40 H 1.08998 * 109.47157 * 59.99931 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5760 -1.6386 1.1339 6 6 1.7977 -0.1755 2.4794 7 7 1.8077 -0.9528 3.5402 8 14 1.4660 1.6535 2.6648 9 1 1.2472 1.9741 4.0982 10 1 0.2559 2.0186 1.8851 11 1 2.6315 2.4218 2.1584 12 6 2.0322 -0.7105 -1.2305 13 7 2.7849 -0.1993 -2.1748 14 6 2.9804 -1.1932 -3.0596 15 6 3.7869 -1.1104 -4.3300 16 6 2.8835 -1.4102 -5.5279 17 6 3.7024 -1.3268 -6.8177 18 6 4.8387 -2.3500 -6.7673 19 6 5.6580 -2.2661 -8.0568 20 6 5.7421 -2.0502 -5.5694 21 6 4.9237 -2.1332 -4.2799 22 7 2.3425 -2.2365 -2.6202 23 8 1.7910 -1.9801 -1.5706 24 1 -0.3634 0.4044 0.9448 25 1 -0.3634 0.6159 -0.8226 26 1 -0.3634 -1.0204 -0.1221 27 1 1.9066 -1.9123 3.4375 28 1 4.2038 -0.1084 -4.4311 29 1 2.4665 -2.4122 -5.4268 30 1 2.0736 -0.6815 -5.5636 31 1 4.1196 -0.3250 -6.9190 32 1 3.0589 -1.5408 -7.6710 33 1 4.4215 -3.3518 -6.6660 34 1 6.4679 -2.9948 -8.0207 35 1 5.0148 -2.4794 -8.9105 36 1 6.0753 -1.2642 -8.1576 37 1 6.1594 -1.0484 -5.6706 38 1 6.5520 -2.7788 -5.5337 39 1 5.5672 -1.9197 -3.4266 40 1 4.5067 -3.1352 -4.1788 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596585362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:39 Heat of formation + Delta-G solvation = 5.632838 kcal Electronic energy + Delta-G solvation = -20086.394862 eV Core-core repulsion = 17094.965581 eV Total energy + Delta-G solvation = -2991.429281 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.49840 -39.99886 -37.17875 -36.60793 -34.45520 -33.36288 -31.83258 -31.62553 -27.86877 -26.99190 -25.29706 -24.52841 -23.71141 -22.82714 -21.22941 -20.49610 -19.71878 -18.87511 -18.22381 -16.78227 -16.42265 -15.62259 -15.41225 -15.30355 -15.17523 -14.78782 -14.53438 -14.37634 -13.63863 -13.63052 -13.35495 -13.25931 -13.09568 -12.96598 -12.92136 -12.43266 -12.27614 -12.17951 -12.06711 -11.97189 -11.80344 -11.66868 -11.51104 -11.34046 -11.21980 -11.06081 -10.71968 -10.48404 -8.87079 -6.49660 0.19724 1.26240 1.52520 1.59130 1.76300 2.00267 2.48812 2.62116 2.93777 3.12339 3.64971 3.66164 3.80394 4.01952 4.14331 4.23605 4.32812 4.40946 4.44952 4.46904 4.49922 4.57957 4.68886 4.79943 4.82646 4.91366 4.98070 4.98612 5.00006 5.00668 5.08476 5.14518 5.16591 5.26125 5.37966 5.40817 5.42269 5.56738 5.67990 5.93391 6.39438 7.19165 7.25778 8.51127 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.042625 B = 0.004013 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.741238 B = 6974.892944 C = 7045.426799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.101 3.899 3 H 0.077 0.923 4 C -0.623 4.623 5 H 0.017 0.983 6 C 0.004 3.996 7 N -0.915 5.915 8 Si 1.072 2.928 9 H -0.284 1.284 10 H -0.231 1.231 11 H -0.264 1.264 12 C 0.234 3.766 13 N -0.523 5.523 14 C 0.173 3.827 15 C 0.009 3.991 16 C -0.105 4.105 17 C -0.104 4.104 18 C -0.094 4.094 19 C -0.142 4.142 20 C -0.104 4.104 21 C -0.108 4.108 22 N -0.414 5.414 23 O 0.046 5.954 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.258 0.742 28 H 0.106 0.894 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 2.016 -21.360 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.080 3.920 3 H 0.095 0.905 4 C -0.660 4.660 5 H 0.035 0.965 6 C -0.197 4.197 7 N -0.547 5.547 8 Si 0.890 3.110 9 H -0.209 1.209 10 H -0.154 1.154 11 H -0.189 1.189 12 C 0.015 3.985 13 N -0.257 5.257 14 C -0.100 4.100 15 C -0.011 4.011 16 C -0.143 4.143 17 C -0.141 4.141 18 C -0.113 4.113 19 C -0.200 4.200 20 C -0.141 4.141 21 C -0.147 4.147 22 N -0.130 5.130 23 O -0.003 6.003 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.124 0.876 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.832 2.713 -20.836 21.358 hybrid contribution 0.334 -1.964 -0.106 1.995 sum 4.165 0.749 -20.941 21.365 Atomic orbital electron populations 1.22123 0.93829 1.01693 1.02388 1.17978 0.95048 0.95248 0.83683 0.90500 1.21744 1.42358 1.09777 0.92147 0.96459 1.27203 0.91758 1.09841 0.90934 1.70967 1.44868 1.06058 1.32813 0.83756 0.79838 0.70078 0.77312 1.20941 1.15426 1.18867 1.29512 0.90854 0.81463 0.96634 1.71963 1.19072 1.30560 1.04112 1.26542 0.98888 0.84690 0.99912 1.19799 0.93678 1.02504 0.85124 1.21543 0.97546 1.01648 0.93594 1.21566 0.96739 1.00259 0.95571 1.21177 0.95680 0.99158 0.95276 1.21784 0.99772 1.02351 0.96055 1.21554 0.97492 1.03063 0.92034 1.21545 0.95804 0.97816 0.99531 1.74483 1.14920 1.24810 0.98765 1.85239 1.55208 1.30554 1.29345 0.91019 0.91659 0.93335 0.93349 0.87554 0.92495 0.92027 0.90555 0.90181 0.91766 0.92320 0.92028 0.92030 0.90596 0.90608 0.93037 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 8.90 71.98 0.64 -5.01 16 2 C 0.10 4.69 2.37 -12.29 -0.03 4.66 16 3 H 0.08 3.38 6.72 -2.39 -0.02 3.37 16 4 C -0.62 -34.61 8.76 25.60 0.22 -34.39 16 5 H 0.02 1.08 7.99 -2.91 -0.02 1.06 16 6 C 0.00 0.23 5.19 84.66 0.44 0.67 16 7 N -0.91 -54.89 13.70 21.45 0.29 -54.60 16 8 Si 1.07 45.63 26.44 68.60 1.81 47.44 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.23 -8.31 6.15 99.48 0.61 -7.70 16 11 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 12 C 0.23 10.74 6.96 88.38 0.61 11.36 16 13 N -0.52 -22.48 11.55 -303.21 -3.50 -25.98 16 14 C 0.17 6.64 6.72 138.46 0.93 7.57 16 15 C 0.01 0.25 2.66 -11.54 -0.03 0.22 16 16 C -0.10 -2.41 5.19 30.60 0.16 -2.26 16 17 C -0.10 -1.67 5.20 30.60 0.16 -1.51 16 18 C -0.09 -1.46 2.72 -10.79 -0.03 -1.49 16 19 C -0.14 -1.66 9.19 71.98 0.66 -1.00 16 20 C -0.10 -1.82 5.20 30.58 0.16 -1.66 16 21 C -0.11 -2.73 5.18 30.58 0.16 -2.57 16 22 N -0.41 -17.50 12.16 -60.32 -0.73 -18.24 16 23 O 0.05 2.14 11.31 74.85 0.85 2.98 16 24 H 0.07 2.82 5.48 -2.39 -0.01 2.80 16 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.26 15.81 8.73 -92.71 -0.81 15.00 16 28 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -64.29 320.79 3.65 -60.64 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.87 Total: 13.17 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 4.06 Total: -25.42 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -3.94 Total: -98.81 kcal Atomic # 8 Polarization: 2.14 SS G_CDS: 0.85 Total: 2.98 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.81 Total: 47.44 kcal Total: -64.29 3.65 -60.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596585362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.272 kcal (2) G-P(sol) polarization free energy of solvation -64.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds